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Volumn 30, Issue 7, 2013, Pages 593-599

Pyrosequencing Reveals Bacterial Diversity in the Rhizosphere of Three Phragmites australis Ecotypes

Author keywords

16S rRNA; bacteria; Phragmites australis; pyrosequencing; rhizosphere

Indexed keywords

BACTERIUM; COMMUNITY STRUCTURE; DEGRADATION; DNA; ECOTYPE; RHIZOSPHERE; RNA; SPECIES DIVERSITY;

EID: 84878456544     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490451.2012.740145     Document Type: Article
Times cited : (28)

References (41)
  • 1
    • 84878458221 scopus 로고    scopus 로고
    • The change of wetland in Hexi Corridor in the past thirty years and a tentative discussion on its mechanism
    • Bai, L, Jiang, Q, Liu, W and Cui, H. 2010. The change of wetland in Hexi Corridor in the past thirty years and a tentative discussion on its mechanism. Remote Sens Land Resour, 83: 101 - 106.
    • (2010) Remote Sens Land Resour , vol.83 , pp. 101-106
    • Bai, L.1    Jiang, Q.2    Liu, W.3    Cui, H.4
  • 2
    • 11144316138 scopus 로고    scopus 로고
    • Endophytic and ectophytic potato associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi
    • Berg, G, Krechel, A, Ditz, M, Sikora, R A, Ulrich, A and Hallmann, J. 2005. Endophytic and ectophytic potato associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol Ecol, 51: 215 - 229.
    • (2005) FEMS Microbiol Ecol , vol.51 , pp. 215-229
    • Berg, G.1    Krechel, A.2    Ditz, M.3    Sikora, R.A.4    Ulrich, A.5    Hallmann, J.6
  • 3
    • 34248512652 scopus 로고    scopus 로고
    • Metabolic activity and phylogenetic diversity of reed (Phragmites australis) periphyton bacterial communities in a Hungarian shallow soda lake
    • Borsodi, A K, Rusznyák, A, Molnár, P, Vladár, P, Reskóné, M N, Tóth, E M, Sipos, R, Gedeon, G and Márialigeti, K. 2007. Metabolic activity and phylogenetic diversity of reed (Phragmites australis) periphyton bacterial communities in a Hungarian shallow soda lake. Microbial Ecol, 53: 612 - 620.
    • (2007) Microbial Ecol , vol.53 , pp. 612-620
    • Borsodi, A.K.1    Rusznyák, A.2    Molnár, P.3    Vladár, P.4    Reskóné, M.N.5    Tóth, E.M.6    Sipos, R.7    Gedeon, G.8    Márialigeti, K.9
  • 4
    • 0000524452 scopus 로고
    • The mineral nutrition of wild plants
    • Chapin, FS. 1980. The mineral nutrition of wild plants. Annu Rev Ecol Syst, 11: 233 - 260.
    • (1980) Annu Rev Ecol Syst , vol.11 , pp. 233-260
    • Chapin, F.S.1
  • 5
    • 33748166019 scopus 로고    scopus 로고
    • Isolation and characterization of Phragmites australis (L.) rhizosphere bacteria from contaminated site for bioremediation of colored distillery effluent
    • Chaturvedi, S, Chandra, R and Rai, V. 2006. Isolation and characterization of Phragmites australis (L.) rhizosphere bacteria from contaminated site for bioremediation of colored distillery effluent. Ecol Eng, 27: 202 - 207.
    • (2006) Ecol Eng , vol.27 , pp. 202-207
    • Chaturvedi, S.1    Chandra, R.2    Rai, V.3
  • 6
    • 2642554918 scopus 로고    scopus 로고
    • Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae
    • Cho, J, Vergin, K L, Morris, R M and Giovannoni, S J. 2004. Lentisphaera araneosa gen. nov., sp. nov, a transparent exopolymer producing marine bacterium, and the description of a novel bacterial phylum, Lentisphaerae. Environ Microbiol, 6: 611 - 621.
    • (2004) Environ Microbiol , vol.6 , pp. 611-621
    • Cho, J.1    Vergin, K.L.2    Morris, R.M.3    Giovannoni, S.J.4
  • 7
    • 0038718850 scopus 로고    scopus 로고
    • Endophytic colonization of plant roots by nitrogen-fixing bacteria
    • Cocking, EC. 2003. Endophytic colonization of plant roots by nitrogen-fixing bacteria. Plant Soil, 252: 169 - 175.
    • (2003) Plant Soil , vol.252 , pp. 169-175
    • Cocking, E.C.1
  • 8
    • 0038221080 scopus 로고    scopus 로고
    • Seasonal patterns of viruses, bacteria and dissolved organic carbon in a riverine wetland
    • Farnell-Jackson, E A and Ward, A K. 2003. Seasonal patterns of viruses, bacteria and dissolved organic carbon in a riverine wetland. Freshwater Biol, 48: 841 - 851.
    • (2003) Freshwater Biol , vol.48 , pp. 841-851
    • Farnell-Jackson, E.A.1    Ward, A.K.2
  • 9
    • 23944525404 scopus 로고    scopus 로고
    • Computational improvements reveal great bacterial diversity and high metal toxicity in soil
    • Gans, J, Wolinsky, M and Dunbar, J. 2005. Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science, 309: 1387 - 1390.
    • (2005) Science , vol.309 , pp. 1387-1390
    • Gans, J.1    Wolinsky, M.2    Dunbar, J.3
  • 10
    • 27844604206 scopus 로고    scopus 로고
    • Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
    • Gao, B and Gupta, R S. 2005. Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int J Syst Evol Microbiol, 55: 2401 - 2412.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2401-2412
    • Gao, B.1    Gupta, R.S.2
  • 12
    • 56149109448 scopus 로고    scopus 로고
    • Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing
    • Kim, B, Kim, B K, Lee, J, Kim, M, Lim, Y W and Chun, J. 2008. Rapid phylogenetic dissection of prokaryotic community structure in tidal flat using pyrosequencing. J Microbiol, 46: 357 - 363.
    • (2008) J Microbiol , vol.46 , pp. 357-363
    • Kim, B.1    Kim, B.K.2    Lee, J.3    Kim, M.4    Lim, Y.W.5    Chun, J.6
  • 13
    • 55349142093 scopus 로고    scopus 로고
    • Methane turnover and temperature response of methane-oxidizing bacteria in permafrost-affected soils of northeast Siberia
    • Knoblauch, C, Zimmermann, U, Blumenberg, M, Michaelis, W and Pfeiffer, E. 2008. Methane turnover and temperature response of methane-oxidizing bacteria in permafrost-affected soils of northeast Siberia. Soil Biol Biochem, 40: 3004 - 3013.
    • (2008) Soil Biol Biochem , vol.40 , pp. 3004-3013
    • Knoblauch, C.1    Zimmermann, U.2    Blumenberg, M.3    Michaelis, W.4    Pfeiffer, E.5
  • 14
    • 0024526211 scopus 로고
    • Methane production, sulfate reduction and competition for substrates in the sediments of Lake Washington
    • Kuivila, K M, Murray, J W and Devol, A H. 1989. Methane production, sulfate reduction and competition for substrates in the sediments of Lake Washington. Geochim Cosmochim Acta, 53: 409 - 416.
    • (1989) Geochim Cosmochim Acta , vol.53 , pp. 409-416
    • Kuivila, K.M.1    Murray, J.W.2    Devol, A.H.3
  • 15
    • 79951803389 scopus 로고    scopus 로고
    • A comparative analysis on spatial patterns and processes of three typical wetland ecosystems in 3H area, China
    • Li, A, Deng, W, Kong, B, Song, M, Feng, W, Lu, X, Lei, G and Bai, J. 2010b. A comparative analysis on spatial patterns and processes of three typical wetland ecosystems in 3H area, China. Procedia Environ Sci, 2: 315 - 332.
    • (2010) Procedia Environ Sci , vol.2 , pp. 315-332
    • Li, A.1    Deng, W.2    Kong, B.3    Song, M.4    Feng, W.5    Lu, X.6    Lei, G.7    Bai, J.8
  • 16
    • 77954365666 scopus 로고    scopus 로고
    • Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu Wetland (China)
    • Li, Y H, Zhu, J N, Zhai, Z H and Zhang, Q. 2010a. Endophytic bacterial diversity in roots of Phragmites australis in constructed Beijing Cuihu Wetland (China). FEMS Microbiol Lett, 309: 84 - 93.
    • (2010) FEMS Microbiol Lett , vol.309 , pp. 84-93
    • Li, Y.H.1    Zhu, J.N.2    Zhai, Z.H.3    Zhang, Q.4
  • 17
    • 79951724166 scopus 로고    scopus 로고
    • Characterization of bacterial communities at heavy-metal-contaminated sites
    • Margesin, R, Płaza, G A and Kasenbacher, S. 2010. Characterization of bacterial communities at heavy-metal-contaminated sites. Chemosphere, 82: 1583 - 1588.
    • (2010) Chemosphere , vol.82 , pp. 1583-1588
    • Margesin, R.1    Płaza, G.A.2    Kasenbacher, S.3
  • 20
    • 54949085040 scopus 로고    scopus 로고
    • First cultivation and ecological investigation of a bacterium affiliated with the Candidate Phylum OP5 from hot springs
    • Mori, K, Sunamura, M, Yanagawa, K, Ishibashi, J, Miyoshi, Y, Iino, T, Suzuki, K and Urabe, T. 2008. First cultivation and ecological investigation of a bacterium affiliated with the Candidate Phylum OP5 from hot springs. Appl Environ Microbiol, 74: 6223 - 6229.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6223-6229
    • Mori, K.1    Sunamura, M.2    Yanagawa, K.3    Ishibashi, J.4    Miyoshi, Y.5    Iino, T.6    Suzuki, K.7    Urabe, T.8
  • 21
    • 70450265235 scopus 로고    scopus 로고
    • Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov
    • Mori, K, Yamaguchi, K, Sakiyama, Y, Urabe, T and Suzuki, K. 2009. Caldisericum exile gen. nov., sp. nov., an anaerobic, thermophilic, filamentous bacterium of a novel bacterial phylum, Caldiserica phyl. nov., originally called the candidate phylum OP5, and description of Caldisericaceae fam. nov., Caldisericales ord. nov. and Caldisericia classis nov. Int J Syst Evol Microbiol, 59: 2894 - 2898.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 2894-2898
    • Mori, K.1    Yamaguchi, K.2    Sakiyama, Y.3    Urabe, T.4    Suzuki, K.5
  • 22
    • 49449109115 scopus 로고    scopus 로고
    • Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis
    • Oakley, B B, Fiedler, T L, Marrazzo, J M and Fredricks, D N. 2008. Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis. Appl Environ Microbiol, 74: 4898 - 4909.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4898-4909
    • Oakley, B.B.1    Fiedler, T.L.2    Marrazzo, J.M.3    Fredricks, D.N.4
  • 24
    • 77952088961 scopus 로고    scopus 로고
    • Biochemical cycling in the rhizosphere having an impact on global change
    • Philippot, L, Hallin, S, Börjesson, G and Baggs, E M. 2009. Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil, 321: 61 - 81.
    • (2009) Plant Soil , vol.321 , pp. 61-81
    • Philippot, L.1    Hallin, S.2    Börjesson, G.3    Baggs, E.M.4
  • 25
    • 0033796297 scopus 로고    scopus 로고
    • Evaluation of methane oxidation in therhizosphere of a Carex dominated fen in northcentral Alberta, Canada
    • Popp, T J, Chanton, J P, Whiting, G J and Grant, N. 2000. Evaluation of methane oxidation in therhizosphere of a Carex dominated fen in northcentral Alberta, Canada. Biogeochemistry, 51: 259 - 281.
    • (2000) Biogeochemistry , vol.51 , pp. 259-281
    • Popp, T.J.1    Chanton, J.P.2    Whiting, G.J.3    Grant, N.4
  • 26
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse, E, Quast, C, Knittel, K, Fuchs, B M, Ludwig, W, Peplies, J and Glöckner, F O. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucl Acid Res, 35: 7188 - 7196.
    • (2007) Nucl Acid Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glöckner, F.O.7
  • 27
    • 77956547436 scopus 로고    scopus 로고
    • The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms
    • Raaijmakers, J M, Paulitz, C T, Steinberg, C, Alabouvette, C and Moënne-Loccoz, Y. 2009. The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms. Plant Soil, 321: 341 - 361.
    • (2009) Plant Soil , vol.321 , pp. 341-361
    • Raaijmakers, J.M.1    Paulitz, C.T.2    Steinberg, C.3    Alabouvette, C.4    Moënne-Loccoz, Y.5
  • 28
    • 28744450136 scopus 로고    scopus 로고
    • Plant growth-promoting bacteria facilitate the growth of the common reed Phragmites australis in the presence of copper or polycyclic aromatic hydrocarbons
    • Reed, M LE, Warner, B G and Glick, B R. 2005. Plant growth-promoting bacteria facilitate the growth of the common reed Phragmites australis in the presence of copper or polycyclic aromatic hydrocarbons. Curr Microbiol, 51: 425 - 429.
    • (2005) Curr Microbiol , vol.51 , pp. 425-429
    • Reed, M.L.E.1    Warner, B.G.2    Glick, B.R.3
  • 30
    • 0029883208 scopus 로고    scopus 로고
    • Regulation of methane oxidation in a freshwater wetland by water table changes and anoxia
    • Roslev, P and King, G M. 1996. Regulation of methane oxidation in a freshwater wetland by water table changes and anoxia. FEMS Microbiol Ecol, 19: 105 - 115.
    • (1996) FEMS Microbiol Ecol , vol.19 , pp. 105-115
    • Roslev, P.1    King, G.M.2
  • 31
    • 33846109266 scopus 로고    scopus 로고
    • Identification of acetate-utilizing bacteria and archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA
    • Schwarz, J IK, Lueders, T, Eckert, W and Conrad, R. 2007. Identification of acetate-utilizing bacteria and archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environ Microbiol, 9: 223 - 237.
    • (2007) Environ Microbiol , vol.9 , pp. 223-237
    • Schwarz, J.I.K.1    Lueders, T.2    Eckert, W.3    Conrad, R.4
  • 32
    • 33749395420 scopus 로고    scopus 로고
    • Perception and modification of plant flavonoid signals by rhizosphere microorganisms
    • Shaw, L J, Morris, P and Hooker, J E. 2006. Perception and modification of plant flavonoid signals by rhizosphere microorganisms. Environ Microbiol, 8: 1867 - 1880.
    • (2006) Environ Microbiol , vol.8 , pp. 1867-1880
    • Shaw, L.J.1    Morris, P.2    Hooker, J.E.3
  • 34
    • 37449011679 scopus 로고    scopus 로고
    • Methylohalomonas lacus gen. nov., sp. nov. and Methylonatrum kenyense gen. nov., sp. nov., methylotrophic gammaproteobacteria from hypersaline lakes
    • Sorokin, D Y, Trotsenko, Y A, Doronina, N V, Tourova, T P, Galinski, E A, Kolganova, T V and Muyzer, G. 2007. Methylohalomonas lacus gen. nov., sp. nov. and Methylonatrum kenyense gen. nov., sp. nov., methylotrophic gammaproteobacteria from hypersaline lakes. Int J Syst Evol Microbiol, 57: 2762 - 2769.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2762-2769
    • Sorokin, D.Y.1    Trotsenko, Y.A.2    Doronina, N.V.3    Tourova, T.P.4    Galinski, E.A.5    Kolganova, T.V.6    Muyzer, G.7
  • 35
    • 77954695132 scopus 로고    scopus 로고
    • Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
    • Uroz, S, Buée, M, Murat, C, Frey-Klett, P and Martin, F. 2010. Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environ Microbiol Rep, 2: 281 - 288.
    • (2010) Environ Microbiol Rep , vol.2 , pp. 281-288
    • Uroz, S.1    Buée, M.2    Murat, C.3    Frey-Klett, P.4    Martin, F.5
  • 36
    • 34248217955 scopus 로고    scopus 로고
    • Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil
    • Uroz, S, Calvaruso, C, Turpault, M P, Pierrat, J C, Mustin, C and Frey-Klett, P. 2007. Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the bacterial communities involved in mineral weathering in a forest soil. Appl Environ Microbiol, 73: 3019 - 3027.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3019-3027
    • Uroz, S.1    Calvaruso, C.2    Turpault, M.P.3    Pierrat, J.C.4    Mustin, C.5    Frey-Klett, P.6
  • 37
    • 44949205700 scopus 로고    scopus 로고
    • Diversity of sulfate-reducing bacteria inhabiting the rhizosphere of Phragmites australis in Lake Velencei (Hungary) revealed by a combined cultivation-based and molecular approach
    • Vladár, P, Rusznyák, A, Márialigeti, K and Borsodi, A K. 2008. Diversity of sulfate-reducing bacteria inhabiting the rhizosphere of Phragmites australis in Lake Velencei (Hungary) revealed by a combined cultivation-based and molecular approach. Microbial Ecol, 56: 64 - 75.
    • (2008) Microbial Ecol , vol.56 , pp. 64-75
    • Vladár, P.1    Rusznyák, A.2    Márialigeti, K.3    Borsodi, A.K.4
  • 38
    • 0000891164 scopus 로고
    • Comparative investigation on plasmolemma properties of different reed ecotypes in Hexi Corridor
    • Wang, H and Zhang, C. 1993. Comparative investigation on plasmolemma properties of different reed ecotypes in Hexi Corridor. Acta Bot Sin, 35: 533 - 540.
    • (1993) Acta Bot Sin , vol.35 , pp. 533-540
    • Wang, H.1    Zhang, C.2
  • 39
    • 64449087505 scopus 로고    scopus 로고
    • The dominant bacteria shifted from the order ''Lactobacillales'' to Bacillales and Actinomycetales during a start-up period of large-scale, completely-mixed composting reactor using plastic bottle flakes as bulking agent
    • Watanabe, K, Nagao, N, Toda, T and Kurosawa, N. 2009. The dominant bacteria shifted from the order ''Lactobacillales'' to Bacillales and Actinomycetales during a start-up period of large-scale, completely-mixed composting reactor using plastic bottle flakes as bulking agent. World J Microbiol Biotechnol, 25: 803 - 811.
    • (2009) World J Microbiol Biotechnol , vol.25 , pp. 803-811
    • Watanabe, K.1    Nagao, N.2    Toda, T.3    Kurosawa, N.4
  • 40
    • 0033810135 scopus 로고    scopus 로고
    • A survey of photosynthetic carbon metabolism in 4 ecotypes of Phragmites australis in northwest China: Leaf anatomy, ultrastructure, and activities of ribulose 1,5-bisphosphate carboxylase, phosphoenolpyruvate carboxylase and glycollate oxidase
    • Zheng, W J, Zheng, X P and Zhang, C L. 2000. A survey of photosynthetic carbon metabolism in 4 ecotypes of Phragmites australis in northwest China: Leaf anatomy, ultrastructure, and activities of ribulose 1,5-bisphosphate carboxylase, phosphoenolpyruvate carboxylase and glycollate oxidase. Physiol Plant, 110: 201 - 208.
    • (2000) Physiol Plant , vol.110 , pp. 201-208
    • Zheng, W.J.1    Zheng, X.P.2    Zhang, C.L.3
  • 41
    • 33745165989 scopus 로고    scopus 로고
    • Responses of different ecotypes of reed growing in the Hexi Corridor to natural drought and salinity
    • Zhu, X Y, Wang, S M and Zhang, C L. 2003. Responses of different ecotypes of reed growing in the Hexi Corridor to natural drought and salinity. Plant Physiol J, 39: 371 - 376.
    • (2003) Plant Physiol J , vol.39 , pp. 371-376
    • Zhu, X.Y.1    Wang, S.M.2    Zhang, C.L.3


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