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Volumn 162, Issue 2, 2013, Pages 553-566

Identifying genotype-by-environment interactions in the metabolism of germinating arabidopsis seeds using generalized genetical genomics

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; COMPARATIVE STUDY; GENETICS; GENOMICS; GENOTYPE ENVIRONMENT INTERACTION; GERMINATION; METABOLISM; METHODOLOGY; PHENOTYPE; PHYSIOLOGY; PLANT SEED; QUANTITATIVE TRAIT LOCUS;

EID: 84878448872     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.113.216176     Document Type: Article
Times cited : (49)

References (73)
  • 2
    • 0033551212 scopus 로고    scopus 로고
    • Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana
    • Alonso-Blanco C, Blankestijn-de Vries H, Hanhart CJ, Koornneef M (1999) Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana. Proc Natl Acad Sci USA 96: 4710-4717
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4710-4717
    • Alonso-Blanco, C.1    Blankestijn-de Vries, H.2    Hanhart, C.J.3    Koornneef, M.4
  • 3
    • 77950516849 scopus 로고    scopus 로고
    • Seed desiccation: A bridge between maturation and germination
    • Angelovici R, Galili G, Fernie AR, Fait A (2010) Seed desiccation: a bridge between maturation and germination. Trends Plant Sci 15: 211-218
    • (2010) Trends Plant Sci , vol.15 , pp. 211-218
    • Angelovici, R.1    Galili, G.2    Fernie, A.R.3    Fait, A.4
  • 5
    • 15744387189 scopus 로고    scopus 로고
    • QTL analysis of lignification and cell wall digestibility in the Bay-0 3 Shahdara RIL progeny of Arabidopsis thaliana as a model system for forage plant
    • Barriere Y, Laperche A, Barrot L, Aurel G, Briand M, Jouanin L (2005) QTL analysis of lignification and cell wall digestibility in the Bay-0 3 Shahdara RIL progeny of Arabidopsis thaliana as a model system for forage plant. Plant Sci 168: 1235-1245
    • (2005) Plant Sci , vol.168 , pp. 1235-1245
    • Barriere, Y.1    Laperche, A.2    Barrot, L.3    Aurel, G.4    Briand, M.5    Jouanin, L.6
  • 6
    • 0031420258 scopus 로고    scopus 로고
    • Seed germination and dormancy
    • Bewley JD (1997) Seed germination and dormancy. Plant Cell 9: 1055-1066
    • (1997) Plant Cell , vol.9 , pp. 1055-1066
    • Bewley, J.D.1
  • 7
    • 79953675878 scopus 로고    scopus 로고
    • Branched-chain amino acid metabolism in Arabidopsis thaliana
    • doi/10.1199/tab.0137
    • Binder S (2010) Branched-chain amino acid metabolism in Arabidopsis thaliana. The Arabidopsis Book 8: e0137, doi/10.1199/tab.0137
    • (2010) The Arabidopsis Book , vol.8
    • Binder, S.1
  • 8
    • 1542290398 scopus 로고    scopus 로고
    • GABA in plants: Just a metabolite?
    • Bouché N, Fromm H (2004) GABA in plants: just a metabolite? Trends Plant Sci 9: 110-115
    • (2004) Trends Plant Sci , vol.9 , pp. 110-115
    • Bouché, N.1    Fromm, H.2
  • 11
    • 33747129225 scopus 로고    scopus 로고
    • Natural variation for carbohydrate content in Arabi-dopsis. Interaction with complex traits dissected by quantitative genetics
    • Calenge F, Saliba-Colombani V, Mahieu S, Loudet O, Daniel-Vedele F, Krapp A (2006) Natural variation for carbohydrate content in Arabi-dopsis. Interaction with complex traits dissected by quantitative genetics. Plant Physiol 141: 1630-1643
    • (2006) Plant Physiol , vol.141 , pp. 1630-1643
    • Calenge, F.1    Saliba-Colombani, V.2    Mahieu, S.3    Loudet, O.4    Daniel-Vedele, F.5    Krapp, A.6
  • 13
    • 52749098376 scopus 로고    scopus 로고
    • Transcriptome- and proteome-wide analyses of seed germination
    • Catusse J, Job C, Job D (2008) Transcriptome- and proteome-wide analyses of seed germination. C R Biol 331: 815-822
    • (2008) C R Biol , vol.331 , pp. 815-822
    • Catusse, J.1    Job, C.2    Job, D.3
  • 14
    • 80052338881 scopus 로고    scopus 로고
    • Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana
    • Chan EKF, Rowe HC, Corwin JA, Joseph B, Kliebenstein DJ (2011) Combining genome-wide association mapping and transcriptional networks to identify novel genes controlling glucosinolates in Arabidopsis thaliana. PLoS Biol 9: e1001125
    • (2011) PLoS Biol , vol.9
    • Chan, E.K.F.1    Rowe, H.C.2    Corwin, J.A.3    Joseph, B.4    Kliebenstein, D.J.5
  • 15
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA mi-croarrays
    • Churchill GA (2002) Fundamentals of experimental design for cDNA mi-croarrays. Nat Genet 32: 490-495
    • (2002) Nat Genet , vol.32 , pp. 490-495
    • Churchill, G.A.1
  • 16
    • 82355175692 scopus 로고    scopus 로고
    • Arabidopsis seed germination under abiotic stress as a concert of action of phytohormones
    • Daszkowska-Golec A (2011) Arabidopsis seed germination under abiotic stress as a concert of action of phytohormones. OMICS 15: 763-774
    • (2011) OMICS , vol.15 , pp. 763-774
    • Daszkowska-Golec, A.1
  • 19
    • 35848959715 scopus 로고    scopus 로고
    • Two genes in Arabidopsis thaliana encoding GDP-L-galactose phosphorylase are required for ascorbate biosynthesis and seedling viability
    • Dowdle J, Ishikawa T, Gatzek S, Rolinski S, Smirnoff N (2007) Two genes in Arabidopsis thaliana encoding GDP-L-galactose phosphorylase are required for ascorbate biosynthesis and seedling viability. Plant J 52: 673-689
    • (2007) Plant J , vol.52 , pp. 673-689
    • Dowdle, J.1    Ishikawa, T.2    Gatzek, S.3    Rolinski, S.4    Smirnoff, N.5
  • 21
    • 80455173619 scopus 로고    scopus 로고
    • Targeted enhancement of glutamate-to-y-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner
    • Fait A, Nesi AN, Angelovici R, Lehmann M, Pham PA, Song L, Haslam RP, Napier J A, Galili G, Fernie AR (2011) Targeted enhancement of glutamate-to-y-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiol 157: 1026-1042
    • (2011) Plant Physiol , vol.157 , pp. 1026-1042
    • Fait, A.1    Nesi, A.N.2    Angelovici, R.3    Lehmann, M.4    Pham, P.A.5    Song, L.6    Haslam, R.P.7    Napier, J.A.8    Galili, G.9    Fernie, A.R.10
  • 24
    • 0034102077 scopus 로고    scopus 로고
    • Isolation and characterization of cDNA clones for the e1/3 and E2 subunits of the branched-chain a-ketoacid dehydrogenase complex in Arabidopsis
    • Fujiki Y, Sato T, Ito M, Watanabe A (2000) Isolation and characterization of cDNA clones for the e1/3 and E2 subunits of the branched-chain a-ketoacid dehydrogenase complex in Arabidopsis. J Biol Chem 275: 6007-6013
    • (2000) J Biol Chem , vol.275 , pp. 6007-6013
    • Fujiki, Y.1    Sato, T.2    Ito, M.3    Watanabe, A.4
  • 26
    • 16544394654 scopus 로고    scopus 로고
    • Genetic control of storage oil synthesis in seeds of Arabidopsis
    • Hobbs DH, Flintham JE, Hills MJ (2004) Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiol 136: 3341-3349
    • (2004) Plant Physiol , vol.136 , pp. 3341-3349
    • Hobbs, D.H.1    Flintham, J.E.2    Hills, M.J.3
  • 27
    • 60249086736 scopus 로고    scopus 로고
    • Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process
    • Howell KA, Narsai R, Carroll A, Ivanova A, Lohse M, Usadel B, Millar AH, Whelan J (2009) Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. Plant Physiol 149: 961-980
    • (2009) Plant Physiol , vol.149 , pp. 961-980
    • Howell, K.A.1    Narsai, R.2    Carroll, A.3    Ivanova, A.4    Lohse, M.5    Usadel, B.6    Millar, A.H.7    Whelan, J.8
  • 28
    • 0035400051 scopus 로고    scopus 로고
    • Genetical genomics: The added value from segregation
    • Jansen RC, Nap JP (2001) Genetical genomics: the added value from segregation. Trends Genet 17: 388-391
    • (2001) Trends Genet , vol.17 , pp. 388-391
    • Jansen, R.C.1    Nap, J.P.2
  • 31
    • 80053594834 scopus 로고    scopus 로고
    • Seed storage oil mobilization is important but not essential for germination or seedling establishment in Arabidopsis
    • Kelly AA, Quettier AL, Shaw E, Eastmond PJ (2011) Seed storage oil mobilization is important but not essential for germination or seedling establishment in Arabidopsis. Plant Physiol 157: 866-875
    • (2011) Plant Physiol , vol.157 , pp. 866-875
    • Kelly, A.A.1    Quettier, A.L.2    Shaw, E.3    Eastmond, P.J.4
  • 36
    • 0033638823 scopus 로고    scopus 로고
    • Gamma aminobutyric acid (GABA) and plant responses to stress
    • Kinnersley AM, Turano FJ (2000) Gamma aminobutyric acid (GABA) and plant responses to stress. Crit Rev Plant Sci 19: 479-509
    • (2000) Crit Rev Plant Sci , vol.19 , pp. 479-509
    • Kinnersley, A.M.1    Turano, F.J.2
  • 37
    • 0034816345 scopus 로고    scopus 로고
    • Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic gluco-sinolate production in Arabidopsis thaliana leaves and seeds
    • Kliebenstein DJ, Gershenzon J, Mitchell-Olds T (2001a) Comparative quantitative trait loci mapping of aliphatic, indolic and benzylic gluco-sinolate production in Arabidopsis thaliana leaves and seeds. Genetics 159: 359-370
    • (2001) Genetics , vol.159 , pp. 359-370
    • Kliebenstein, D.J.1    Gershenzon, J.2    Mitchell-Olds, T.3
  • 38
    • 0035059714 scopus 로고    scopus 로고
    • Gene duplication in the diversification of secondary metabolism: Tandem 2-oxoglutarate-dependent dioxygenases control glucosi-nolate biosynthesis in Arabidopsis
    • Kliebenstein DJ, Lambrix VM, Reichelt M, Gershenzon J, Mitchell-Olds T (2001b) Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosi-nolate biosynthesis in Arabidopsis. Plant Cell 13: 681-693
    • (2001) Plant Cell , vol.13 , pp. 681-693
    • Kliebenstein, D.J.1    Lambrix, V.M.2    Reichelt, M.3    Gershenzon, J.4    Mitchell-Olds, T.5
  • 40
    • 84861851644 scopus 로고    scopus 로고
    • Multi-dimensional regulation of metabolic networks shaping plant development and performance
    • Kooke R, Keurentjes JJ (2012) Multi-dimensional regulation of metabolic networks shaping plant development and performance. J Exp Bot 63: 3353-3365
    • (2012) J Exp Bot , vol.63 , pp. 3353-3365
    • Kooke, R.1    Keurentjes, J.J.2
  • 42
    • 52949116045 scopus 로고    scopus 로고
    • Generalizing genetical genomics: Getting added value from environmental perturbation
    • Li Y, Breitling R, Jansen RC (2008) Generalizing genetical genomics: getting added value from environmental perturbation. Trends Genet 24: 518-524
    • (2008) Trends Genet , vol.24 , pp. 518-524
    • Li, Y.1    Breitling, R.2    Jansen, R.C.3
  • 43
    • 67650666475 scopus 로고    scopus 로고
    • DesignGG: An R-package and web tool for the optimal design of genetical genomics experiments
    • Li Y, Swertz MA, Vera G, Fu J, Breitling R, Jansen RC (2009) DesignGG: an R-package and web tool for the optimal design of genetical genomics experiments. BMC Bioinformatics 10: 188
    • (2009) BMC Bioinformatics , vol.10 , pp. 188
    • Li, Y.1    Swertz, M.A.2    Vera, G.3    Fu, J.4    Breitling, R.5    Jansen, R.C.6
  • 44
    • 84855769227 scopus 로고    scopus 로고
    • Unravelling the complex trait of seed quality: Using natural variation through a combination of physiology, genetics and -omics technologies
    • Ligterink W, Joosen RVL, Hilhorst HWM (2012) Unravelling the complex trait of seed quality: using natural variation through a combination of physiology, genetics and -omics technologies. Seed Sci Res 22: S45-S52
    • (2012) Seed Sci Res , vol.22
    • Ligterink, W.1    Joosen, R.V.L.2    Hilhorst, H.W.M.3
  • 46
    • 65249132985 scopus 로고    scopus 로고
    • MetAlign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
    • Lommen A (2009) MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal Chem 81: 3079-3086
    • (2009) Anal Chem , vol.81 , pp. 3079-3086
    • Lommen, A.1
  • 47
    • 0036950802 scopus 로고    scopus 로고
    • Bay-0 3 Shahdara recombinant inbred line population: A powerful tool for the genetic dissection of complex traits in Arabidopsis
    • Loudet O, Chaillou S, Camilleri C, Bouchez D, Daniel-Vedele F (2002) Bay-0 3 Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis. Theor Appl Genet 104: 1173-1184
    • (2002) Theor Appl Genet , vol.104 , pp. 1173-1184
    • Loudet, O.1    Chaillou, S.2    Camilleri, C.3    Bouchez, D.4    Daniel-Vedele, F.5
  • 48
    • 0037295484 scopus 로고    scopus 로고
    • Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana
    • Loudet O, Chaillou S, Krapp A, Daniel-Vedele F (2003a) Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana. Genetics 163: 711-722
    • (2003) Genetics , vol.163 , pp. 711-722
    • Loudet, O.1    Chaillou, S.2    Krapp, A.3    Daniel-Vedele, F.4
  • 50
    • 15244350750 scopus 로고    scopus 로고
    • Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family
    • Loudet O, Gaudon V, Trubuil A, Daniel-Vedele F (2005) Quantitative trait loci controlling root growth and architecture in Arabidopsis thaliana confirmed by heterogeneous inbred family. Theor Appl Genet 110: 742-753
    • (2005) Theor Appl Genet , vol.110 , pp. 742-753
    • Loudet, O.1    Gaudon, V.2    Trubuil, A.3    Daniel-Vedele, F.4
  • 52
    • 52449104313 scopus 로고    scopus 로고
    • Analysis of natural allelic variation controlling Arabidopsis thaliana seed germinability in response to cold and dark: Identification of three major quantitative trait loci
    • Meng P-H, Macquet A, Loudet O, Marion-Poll A, North HM (2008) Analysis of natural allelic variation controlling Arabidopsis thaliana seed germinability in response to cold and dark: identification of three major quantitative trait loci. Mol Plant 1: 145-154
    • (2008) Mol Plant , vol.1 , pp. 145-154
    • Meng, P.-H.1    Macquet, A.2    Loudet, O.3    Marion-Poll, A.4    North, H.M.5
  • 54
    • 33745562481 scopus 로고    scopus 로고
    • Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
    • Mitchell-Olds T, Schmitt J (2006) Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature 441: 947-952
    • (2006) Nature , vol.441 , pp. 947-952
    • Mitchell-Olds, T.1    Schmitt, J.2
  • 55
    • 14844337487 scopus 로고    scopus 로고
    • Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: Epi-genetic and genetic regulation of transcription in seed
    • Nakabayashi K, Okamoto M, Koshiba T, Kamiya Y, Nambara E (2005) Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epi-genetic and genetic regulation of transcription in seed. Plant J 41: 697-709
    • (2005) Plant J , vol.41 , pp. 697-709
    • Nakabayashi, K.1    Okamoto, M.2    Koshiba, T.3    Kamiya, Y.4    Nambara, E.5
  • 56
    • 0038446879 scopus 로고    scopus 로고
    • Pollen tube growth and guidance is regulated by POP2, an Arabidopsis gene that controls GABA levels
    • Palanivelu R, Brass L, Edlund AF, Preuss D (2003) Pollen tube growth and guidance is regulated by POP2, an Arabidopsis gene that controls GABA levels. Cell 114: 47-59
    • (2003) Cell , vol.114 , pp. 47-59
    • Palanivelu, R.1    Brass, L.2    Edlund, A.F.3    Preuss, D.4
  • 58
    • 33645079140 scopus 로고    scopus 로고
    • Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana
    • Reymond M, Svistoonoff S, Loudet O, Nussaume L, Desnos T (2006) Identification of QTL controlling root growth response to phosphate starvation in Arabidopsis thaliana. Plant Cell Environ 29: 115-125
    • (2006) Plant Cell Environ , vol.29 , pp. 115-125
    • Reymond, M.1    Svistoonoff, S.2    Loudet, O.3    Nussaume, L.4    Desnos, T.5
  • 59
    • 0034218717 scopus 로고    scopus 로고
    • Technical advance: Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry
    • Roessner U, Wagner C, Kopka J, Trethewey RN, Willmitzer L (2000) Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant J 23: 131-142
    • (2000) Plant J , vol.23 , pp. 131-142
    • Roessner, U.1    Wagner, C.2    Kopka, J.3    Trethewey, R.N.4    Willmitzer, L.5
  • 60
    • 54149090305 scopus 로고    scopus 로고
    • Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome
    • Rowe HC, Hansen BG, Halkier BA, Kliebenstein DJ (2008) Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome. Plant Cell 20: 1199-1216
    • (2008) Plant Cell , vol.20 , pp. 1199-1216
    • Rowe, H.C.1    Hansen, B.G.2    Halkier, B.A.3    Kliebenstein, D.J.4
  • 63
  • 64
    • 43249129715 scopus 로고    scopus 로고
    • Gene-environment interaction in yeast gene expression
    • Smith EN, Kruglyak L (2008) Gene-environment interaction in yeast gene expression. PLoS Biol 6: e83
    • (2008) PLoS Biol , vol.6
    • Smith, E.N.1    Kruglyak, L.2
  • 66
    • 84864062924 scopus 로고    scopus 로고
    • MSClust: A tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data
    • Tikunov YM, Laptenok S, Hall RD, Bovy A, de Vos RC (2012) MSClust: a tool for unsupervised mass spectra extraction of chromatography-mass spectrometry ion-wise aligned data. Metabolomics 8: 714-718
    • (2012) Metabolomics , vol.8 , pp. 714-718
    • Tikunov, Y.M.1    Laptenok, S.2    Hall, R.D.3    Bovy, A.4    de Vos, R.C.5
  • 67
    • 0030832776 scopus 로고    scopus 로고
    • Heterogeneous inbred family (HIF) analysis: A method for developing near-isogenic lines that differ at quantitative trait loci
    • Tuinstra MR, Ejeta G, Goldsbrough PB (1997) Heterogeneous inbred family (HIF) analysis: a method for developing near-isogenic lines that differ at quantitative trait loci. Theor Appl Genet 95: 1005-1011
    • (1997) Theor Appl Genet , vol.95 , pp. 1005-1011
    • Tuinstra, M.R.1    Ejeta, G.2    Goldsbrough, P.B.3
  • 73
    • 84859959092 scopus 로고    scopus 로고
    • Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation
    • Zhu J, Sova P, Xu Q, Dombek KM, Xu EY, Vu H, Tu Z, Brem RB, Bumgarner RE, Schadt EE (2012) Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation. PLoS Biol 10: e1001301
    • (2012) PLoS Biol , vol.10
    • Zhu, J.1    Sova, P.2    Xu, Q.3    Dombek, K.M.4    Xu, E.Y.5    Vu, H.6    Tu, Z.7    Brem, R.B.8    Bumgarner, R.E.9    Schadt, E.E.10


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