Comparative profiling of microRNAs in male and female adults of Ascaris suum

Parasitology Research

Volumn 112, Issue 3, 2013, Pages 1189-1195

  Xu, Min Jun ^a   Fu, Jing Hua ^a,b   Nisbet, Alasdair J ^c   Huang, Si Yang ^a   Zhou, Dong Hui ^a   Lin, Rui Qing ^b   Song, Hui Qun ^a   Zhu, Xing Quan ^a,d  

^a Lanzhou Veterinary Research Institute   (China)

^b SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^c MOREDUN RESEARCH INSTITUTE   (United Kingdom)

^d HEILONGJIANG BAYI AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN; ELONGATION FACTOR; GROWTH FACTOR; HEAT SHOCK PROTEIN; MICRORNA; RIBOSOME RNA; SMALL NUCLEAR RNA; SMALL NUCLEOLAR RNA; SPERM CELL MOTILITY PROTEIN; SPERM PROTEIN; TRANSFER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

ARTICLE; ASCARIS SUUM; BIOINFORMATICS; CELL ADHESION; CONTROLLED STUDY; FEMALE; GENE EXPRESSION PROFILING; GENE MAPPING; GENE TARGETING; GENETIC DATABASE; GENETIC REGULATION; MALE; MIRBASE DATABASE; NONHUMAN; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; PARASITE DEVELOPMENT; PREDICTION; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEX DIFFERENCE; SPERMATOZOON MOTILITY; STEM LOOP REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANIMALS; ASCARIS SUUM; COMPUTATIONAL BIOLOGY; FEMALE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MALE; MICRORNAS; SEQUENCE ANALYSIS, DNA; SEX;

ANIMALIA; ASCARIS; ASCARIS SUUM; NEMATODA; SUIDAE;

EID: 84878413320     PISSN: 09320113     EISSN: 14321955     Source Type: Journal    
DOI: 10.1007/s00436-012-3250-x     Document Type: Article

References (34)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Antebi A (2012) Regulation of longevity by the reproductive system. Exp Gerontol. doi: 10.1016/j.exger.2012.09.009
3. Ai L, Xu MJ, Chen MX, Zhang YN, Chen SH, Guo J, Cai YC, Zhou XN, Zhu XQ, Chen JX (2011) Characterization of microRNAs in Taenia saginata of zoonotic significance by solexa deep sequencing and bioinformatics analysis. Parasitol Res 110:2373-2378
4. Bartel DP (2004) microRNAs genomics, biogenesis, mechanism, and function. Cell 116:281-297
5. Cantacessi C, Zou FC, Hall RS, Zhong W, Jex AR, Campbell BE, Ranganathan S, Sternberg PW, Zhu XQ, Gasser RB (2009) Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Mol Cell Probes 23:205-217
6. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, Lao KQ, Livak KJ, Guegler KJ (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33:e179
7. Chiba Y, Hijikata T (2010) MicroRNAs and their therapeutic potential for human diseases: preface. J Pharmacol Sci 114:262-263
8. Crompton DW (2001) Ascaris and ascariasis. Adv Parasitol 48:285-375
9. de Silva NR, Brooker S, Hotez PJ, Montresor A, Engels D, Savioli L (2003) Soil-transmitted helminth infections: updating the global picture. Trends Parasitol 19:547-551
10. Dold C, Holland CV (2011) Ascaris and ascariasis. Microbes Infect 13:632-637
11. GoÅodzik K, Engström A, Höglund J (2012) Optimization of in-house ELISA based on recombinant major sperm protein (rMSP) of Dictyocaulus viviparus for the detection of lungworm infection in cattle. Res Vet Sci 93:813-818
12. Du T, Zamore PD (2007) Beginning to understand microRNA function. Cell Res 17:661-663
13. Fonseca CT, Braz Figueiredo Carvalho G, Carvalho Alves C, de Melo TT (2012) Schistosoma tegument proteins in vaccine and diagnosis development: an update. J Parasitol Res 2012:541268
14. Huang CQ, Gasser RB, Cantacessi C, Nisbet AJ, Zhong W, Sternberg PW, Loukas A, Mulvenna J, Lin RQ, Chen N, Zhu XQ (2008) Genomic-bioinformatic analysis of transcripts enriched in the third-stage larva of the parasitic nematode Ascaris suum. PLoS Negl Trop Dis 2:e246
15. Höglund J, Engström A, Morrison DA, Mineur A, Mattsson JG (2008) Limited sequence variation in the major sperm protein 1 (MSP) gene within populations and species of the genus Dictyocaulus (Nematoda). Parasitol Res 103:11-20
16. Jex AR, Liu S, Li B, Young ND, Hall RS, Li Y, Yang L, Zeng N, Xu X, Xiong Z, Chen F, Wu X, Zhang G, Fang X, Kang Y, Anderson GA, Harris TW, Campbell BE, Vlaminck J, Wang T, Cantacessi C, Schwarz EM, Ranganathan S, Geldhof P, Nejsum P, Sternberg PW, Yang H, Wang J, Wang J, Gasser RB (2011) Ascaris suum draft genome. Nature 479:529-533
17. Joachim A, Dulmer N, Daugschies A, Roepstorff A (2001) Occurrence of helminths in pig fattening units with different management systems in Northern Germany. Vet Parasitol 96:135-146
18. Kruger J, Rehmsmeier M (2006) RNAhybrid: microRNA target prediction easy, fast and flexible. Nucleic Acids Res 34:W451-W454
19. Laabs EM, Schnieder T, Strube C (2012) In vitro studies on the sexual maturation of the bovine lungworm Dictyocaulus viviparus during the development of preadult larvae to adult worms. Parasitol Res 110:1249-1259
20. Leles D, Gardner SL, Reinhard K, Iniguez A, Araujo A (2012) Are Ascaris lumbricoides and Ascaris suum a single species? Parasit Vectors 5:42
21. Lewis R, Behnke JM, Stafford P, Holland CV (2009) Dose-dependent impact of larval Ascaris suum on host body weight in the mouse model. J Helminthol 83:1-5
22. Li BW, Rush AC, Crosby SD, Warren WC, Williams SA, Mitreva M, Weil GJ (2005) Profiling of gender-regulated gene transcripts in the filarial nematode Brugia malayi by cDNA oligonucleotide array analysis. Mol Biochem Parasitol 143:49-57
23. Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966-1967
24. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method. Methods 25:402-408
25. Myers EM (2012) Gαo and Gαq regulate the expression of daf-7, a TGFβ-like gene, in Caenorhabditis elegans. PLoS One 7:e40368
26. Nisbet AJ, Gasser RB (2004) Profiling of gender-specific gene expression for Trichostrongylus vitrinus (Nematoda: Strongylida) by microarray analysis of expressed sequence tag libraries constructed by suppressive-subtractive hybridisation. Int J Parasitol 34:633-643
27. Park J, Dickerson TJ, Janda KD (2008) Major sperm protein as a diagnostic antigen for onchocerciasis. Bioorg Med Chem 16:7206-7209
28. Roberts TM, Stewart M (2012) Role of major sperm protein (MSP) in the protrusion and retraction of Ascaris sperm. Int Rev Cell Mol Biol 297:265-293
29. Schunn AM, Forbes A, Schnieder T, Strube C (2012) Validation of a Dictyocaulus viviparus MSP-ELISA and cut-off adjustment in a one-year longitudinal field study in dairy cattle herds. Vet Parasitol 189:291-298
30. Strube C, Buschbaum S, Schnieder T (2009) Molecular characterization and real-time PCR transcriptional analysis of Dictyocaulus viviparus major sperm proteins. Parasitol Res 104:543-551
31. Thorsen SB, Obad S, Jensen NF, Stenvang J, Kauppinen S (2012) The therapeutic potential of microRNAs in cancer. Cancer J 18:275-284
32. Uysal HK, Boral O, Metiner K, Ilgaz A (2009) Investigation of intestinal parasites in pig feces that are also human pathogens. Turkiye Parazitol Derg 33:218-221
33. Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE (2011) Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles. Genome Res 21:1462-1477
34. Xu MJ, Liu Q, Nisbet AJ, Cai XQ, Yan C, Lin RQ, Yuan ZG, Song HQ, He XH, Zhu XQ (2010) Identification and characterization of microRNAs in Clonorchis sinensis of human health significance. BMC Genomics 11:521