ELOPER: Elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly

Bioinformatics

Volumn 29, Issue 11, 2013, Pages 1455-1457

  Silver, David H ^a   Ben Elazar, Shay ^a   Bogoslavsky, Alexei ^b   Yanai, Itai ^a  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

^b Daynix Computing Ltd   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CONTIG MAPPING; DNA SEQUENCE; GENE LIBRARY; GENOMICS; METHODOLOGY;

CONTIG MAPPING; GENE LIBRARY; GENOMICS; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84878338848     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt169     Document Type: Article

References (5)

1. Batzoglou, S. et al. (2002) ARACHNE: a whole-genome shotgun assembler. Genome Res., 12, 177-189.
2. Lander, E.S. and Waterman, M.S. (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics, 2, 231-239.
3. Li, R. et al. (2010) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res., 20, 265-272.
4. Miller, J.R. et al. (2010) Assembly algorithms for next-generation sequencing data. Genomics, 95, 315-327.
5. Sabehi, G. et al. (2012) A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans. Proc. Natl Acad. Sci. USA, 109, 2037-2042.