Genomic region operation kit for flexible processing of deep sequencing data

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 10, Issue 1, 2013, Pages 200-206

  Ovaska, Kristian ^a   Lyly, Lauri ^a   Sahu, Biswajyoti ^b   Jänne, Olli A ^b,c   Hautaniemi, Sampsa ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

^c HELSINKI UNIVERSITY CENTRAL HOSPITAL   (Finland)

Author keywords

Bioinformatics; deep sequencing; genomic data analysis; region set algebra; software

Indexed keywords

BIOMEDICAL RESEARCH; COMPUTATIONAL ANALYSIS; DEEP SEQUENCING; EFFICIENT DATA STRUCTURES; FLEXIBLE PROCESSING; HIGH-LEVEL INTERFACES; LARGE DATA VOLUMES; MATHEMATICAL FORMALISM;

ALGEBRA; APPLICATION PROGRAMMING INTERFACES (API); BIOINFORMATICS; COMPUTATIONAL METHODS; COMPUTER PROGRAMMING; COMPUTER SOFTWARE; DATA STRUCTURES; EXPERIMENTS; TRANSCRIPTION FACTORS;

GENES;

LUA;

TRANSCRIPTION FACTOR;

ARTICLE; BIOLOGICAL MODEL; BIOLOGY; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN GENOME; MALE; METABOLISM; METHODOLOGY; PROSTATE TUMOR; PROCEDURES;

COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENOME, HUMAN; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MALE; MODELS, GENETIC; PROSTATIC NEOPLASMS; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 84878333009     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2012.170     Document Type: Article

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