-
1
-
-
0037376199
-
Histone and chromatin cross-talk
-
DOI 10.1016/S0955-0674(03)00013-9
-
Histone and chromatin cross-talk. Fischle W, Wang Y, Allis CD, Curr Opin Cell Biol 2003 15 172 183 10.1016/S0955-0674(03)00013-9 12648673 (Pubitemid 36332192)
-
(2003)
Current Opinion in Cell Biology
, vol.15
, Issue.2
, pp. 172-183
-
-
Fischle, W.1
Wang, Y.2
Allis, C.D.3
-
2
-
-
33847076849
-
Chromatin Modifications and Their Function
-
DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
-
Chromatin modifications and their function. Kouzarides T, Cell 2007 128 693 705 10.1016/j.cell.2007.02.005 17320507 (Pubitemid 46273577)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 693-705
-
-
Kouzarides, T.1
-
3
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
High-resolution profiling of histone methylations in the human genome. Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K, Cell 2007 129 823 837 10.1016/j.cell.2007.05.009 17512414 (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
4
-
-
84856120332
-
Understanding the language of Lys36 methylation at histone H3
-
10.1038/nrm3274 22266761
-
Understanding the language of Lys36 methylation at histone H3. Wagner EJ, Carpenter PB, Nat Rev Mol Cell Biol 2012 13 115 126 10.1038/nrm3274 22266761
-
(2012)
Nat Rev Mol Cell Biol
, vol.13
, pp. 115-126
-
-
Wagner, E.J.1
Carpenter, P.B.2
-
5
-
-
77956643239
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers
-
10.1016/j.cell.2010.08.020 20850016
-
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. Vermeulen M, Eberl HC, Matarese F, Marks H, Denissov S, Butter F, Lee KK, Olsen JV, Hyman AA, Stunnenberg HG, Mann M, Cell 2010 142 967 980 10.1016/j.cell.2010.08.020 20850016
-
(2010)
Cell
, vol.142
, pp. 967-980
-
-
Vermeulen, M.1
Eberl, H.C.2
Matarese, F.3
Marks, H.4
Denissov, S.5
Butter, F.6
Lee, K.K.7
Olsen, J.V.8
Hyman, A.A.9
Stunnenberg, H.G.10
Mann, M.11
-
6
-
-
0037310947
-
The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains
-
DOI 10.1016/S0968-0004(03)00004-5
-
The Tudor domain 'Royal Family': tudor, plant agenet, chromo, PWWP and MBT domains. Maurer-Stroh S, Dickens NJ, Hughes-Davies L, Kouzarides T, Eisenhaber F, Ponting CP, Trends Biochem Sci 2003 28 69 74 10.1016/S0968- 0004(03)00004-5 12575993 (Pubitemid 36165134)
-
(2003)
Trends in Biochemical Sciences
, vol.28
, Issue.2
, pp. 69-74
-
-
Maurer-Stroh, S.1
Dickens, N.J.2
Hughes-Davies, L.3
Kouzarides, T.4
Eisenhaber, F.5
Ponting, C.P.6
-
7
-
-
34547427285
-
Recognition of trimethyllysine by a chromodomain is not driven by the hydrophobic effect
-
DOI 10.1073/pnas.0610850104
-
Recognition of trimethyl-lysine by a chromodomain is not driven by the hydrophobic effect. Hughes RM, Wiggins KR, Khorasanizadeh S, Waters ML, Proc Natl Acad Sci USA 2007 104 11184 11188 10.1073/pnas.0610850104 17581885 (Pubitemid 47175115)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.27
, pp. 11184-11188
-
-
Hughes, R.M.1
Wiggins, K.R.2
Khorasanizadeh, S.3
Waters, M.L.4
-
8
-
-
77951977878
-
Molecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1
-
10.1038/nsmb.1797 20400950
-
Molecular basis of histone H3K36me3 recognition by the PWWP domain of Brpf1. Vezzoli A, Bonadies N, Allen MD, Freund SMV, Santiveri CM, Kvinlaug BT, Huntly BJP, Göttgens B, Bycroft M, Nat Struct Mol Biol 2010 17 617 619 10.1038/nsmb.1797 20400950
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 617-619
-
-
Vezzoli, A.1
Bonadies, N.2
Allen, M.D.3
Freund, S.M.V.4
Santiveri, C.M.5
Kvinlaug, B.T.6
Huntly, B.J.P.7
Göttgens, B.8
Bycroft, M.9
-
9
-
-
79959494918
-
Structural and histone-binding ability characterizations of human PWWP domains
-
10.1371/journal.pone.0018919 21720545
-
Structural and histone-binding ability characterizations of human PWWP domains. Wu H, Zeng H, Lam R, Tempel W, Amaya MF, Xu C, Dombrovski L, Qiu W, Wang Y, Min J, PLoS One 2011 6 18919 10.1371/journal.pone.0018919 21720545
-
(2011)
PLoS One
, vol.6
, pp. 518919
-
-
Wu, H.1
Zeng, H.2
Lam, R.3
Tempel, W.4
Amaya, M.F.5
Xu, C.6
Dombrovski, L.7
Qiu, W.8
Wang, Y.9
Min, J.10
-
10
-
-
33745809637
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
-
DOI 10.1038/nature04802, PII NATURE04802
-
Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Li H, Ilin S, Wang W, Duncan EM, Wysocka J, Allis CD, Patel DJ, Nature 2006 442 91 95 16728978 (Pubitemid 44064215)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 91-95
-
-
Li, H.1
Ilin, S.2
Wang, W.3
Duncan, E.M.4
Wysocka, J.5
Allis, C.D.6
Patel, D.J.7
-
11
-
-
33745818717
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2
-
DOI 10.1038/nature04814, PII NATURE04814
-
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Peña PV, Davrazou F, Shi X, Walter KL, Verkhusha VV, Gozani OP, Zhao R, Kutateladze TG, Nature 2006 442 100 103 16728977 (Pubitemid 44064217)
-
(2006)
Nature
, vol.442
, Issue.7098
, pp. 100-103
-
-
Pena, P.V.1
Davrazou, F.2
Shi, X.3
Walter, K.L.4
Verkhusha, V.V.5
Gozani, O.6
Zhao, R.7
Kutateladze, T.G.8
-
12
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
DOI 10.1038/38444
-
Crystal structure of the nucleosome core particle at 2.8 A resolution. Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ, Nature 1997 389 251 260 10.1038/38444 9305837 (Pubitemid 27406632)
-
(1997)
Nature
, vol.389
, Issue.6648
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
13
-
-
31344446959
-
High resolution structure of the HDGF PWWP domain: A potential DNA binding domain
-
DOI 10.1110/ps.051751706
-
High resolution structure of the HDGF PWWP domain: a potential DNA-binding domain. Lukasik SM, Cierpicki T, Borloz M, Grembecka J, Everett A, Bushweller JH, Protein Sci 2006 15 314 323 10.1110/ps.051751706 16384999 (Pubitemid 43145003)
-
(2006)
Protein Science
, vol.15
, Issue.2
, pp. 314-323
-
-
Lukasik, S.M.1
Cierpicki, T.2
Borloz, M.3
Grembecka, J.4
Everett, A.5
Bushweller, J.H.6
-
14
-
-
44949248392
-
Human mismatch repair protein MSH6 contains a PWWP domain that targets double stranded DNA
-
DOI 10.1021/bi7024639
-
Human mismatch repair protein MSH6 contains a PWWP domain that targets double-stranded DNA. Laguri C, Duband-Goulet I, Friedrich N, Axt M, Belin P, Callebaut I, Gilquin B, Zinn-Justin S, Couprie J, Biochemistry 2008 47 6199 6207 10.1021/bi7024639 18484749 (Pubitemid 351812832)
-
(2008)
Biochemistry
, vol.47
, Issue.23
, pp. 6199-6207
-
-
Laguri, C.1
Duband-Goulet, I.2
Friedrich, N.3
Axt, M.4
Belin, P.5
Callebaut, I.6
Gilquin, B.7
Zinn-Justin, S.8
Couprie, J.9
-
15
-
-
33745617039
-
Identification and Characterization of the Chromatin-binding Domains of the HIV-1 Integrase Interactor LEDGF/p75
-
DOI 10.1016/j.jmb.2006.04.073, PII S0022283606005675
-
Identification and characterization of the chromatin-binding domains of the HIV-1 integrase interactor LEDGF/p75. Llano M, Vanegas M, Hutchins N, Thompson D, Delgado S, Poeschla EM, J Mol Biol 2006 360 760 773 10.1016/j.jmb.2006.04.073 16793062 (Pubitemid 43993915)
-
(2006)
Journal of Molecular Biology
, vol.360
, Issue.4
, pp. 760-773
-
-
Llano, M.1
Vanegas, M.2
Hutchins, N.3
Thompson, D.4
Delgado, S.5
Poeschla, E.M.6
-
16
-
-
33645528413
-
A tripartite DNA-binding element, comprised of the nuclear localization signal and two AT-hook motifs, mediates the association of LEDGF/p75 with chromatin in vivo
-
10.1093/nar/gkl052 16549878
-
A tripartite DNA-binding element, comprised of the nuclear localization signal and two AT-hook motifs, mediates the association of LEDGF/p75 with chromatin in vivo. Turlure F, Maertens G, Rahman S, Cherepanov P, Engelman A, Nucleic Acids Res 2006 34 1653 1665 10.1093/nar/gkl052 16549878
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1653-1665
-
-
Turlure, F.1
Maertens, G.2
Rahman, S.3
Cherepanov, P.4
Engelman, A.5
-
17
-
-
84863654457
-
Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
-
10.1371/journal.pgen.1002717 22615581
-
Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing. Pradeepa MM, Sutherland HG, Ule J, Grimes GR, Bickmore WA, PLoS Genet 2012 8 1002717 10.1371/journal.pgen.1002717 22615581
-
(2012)
PLoS Genet
, vol.8
, pp. 51002717
-
-
Pradeepa, M.M.1
Sutherland, H.G.2
Ule, J.3
Grimes, G.R.4
Bickmore, W.A.5
-
18
-
-
0032538795
-
Isolation of cDNAs encoding novel transcription coactivators p52 and p75 reveals an alternate regulatory mechanism of transcriptional activation
-
Isolation of cDNAs encoding novel transcription coactivators p52 and p75 reveals an alternate regulatory mechanism of transcriptional activation. Ge H, Si Y, Roeder RG, EMBO J 1998 17 6723 6729 10.1093/emboj/17.22.6723 9822615 (Pubitemid 28521805)
-
(1998)
EMBO Journal
, vol.17
, Issue.22
, pp. 6723-6729
-
-
Ge, H.1
Si, Y.2
Roeder, R.G.3
-
19
-
-
77649259825
-
Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration
-
10.1073/pnas.0914142107 20133638
-
Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration. Ferris AL, Wu X, Hughes CM, Stewart C, Smith SJ, Milne TA, Wang GG, Shun M-C, Allis CD, Engelman A, Hughes SH, Proc Natl Acad Sci USA 2010 107 3135 3140 10.1073/pnas.0914142107 20133638
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 3135-3140
-
-
Ferris, A.L.1
Wu, X.2
Hughes, C.M.3
Stewart, C.4
Smith, S.J.5
Milne, T.A.6
Wang, G.G.7
Shun, M.-C.8
Allis, C.D.9
Engelman, A.10
Hughes, S.H.11
-
20
-
-
82355171876
-
Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting
-
10.1074/jbc.M111.255711 21987578
-
Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting. Gijsbers R, Vets S, De Rijck J, Ocwieja KE, Ronen K, Malani N, Bushman FD, Debyser Z, J Biol Chem 2011 286 41812 41825 10.1074/jbc.M111.255711 21987578
-
(2011)
J Biol Chem
, vol.286
, pp. 41812-41825
-
-
Gijsbers, R.1
Vets, S.2
De Rijck, J.3
Ocwieja, K.E.4
Ronen, K.5
Malani, N.6
Bushman, F.D.7
Debyser, Z.8
-
21
-
-
45849115106
-
Menin Critically Links MLL Proteins with LEDGF on Cancer-Associated Target Genes
-
DOI 10.1016/j.ccr.2008.05.003, PII S153561080800158X
-
Menin critically links MLL proteins with LEDGF on cancer-associated target genes. Yokoyama A, Cleary ML, Cancer Cell 2008 14 36 46 10.1016/j.ccr.2008.05.003 18598942 (Pubitemid 351885493)
-
(2008)
Cancer Cell
, vol.14
, Issue.1
, pp. 36-46
-
-
Yokoyama, A.1
Cleary, M.L.2
-
22
-
-
84864649532
-
LEDGF (p75) promotes DNA-end resection and homologous recombination
-
10.1038/nsmb.2314 22773103
-
LEDGF (p75) promotes DNA-end resection and homologous recombination. Daugaard M, Baude A, Fugger K, Povlsen LK, Beck H, Sørensen CS, Petersen NHT, Sorensen PHB, Lukas C, Bartek J, Lukas J, Rohde M, Jäättelä M, Nat Struct Mol Biol 2012 19 803 810 10.1038/nsmb.2314 22773103
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 803-810
-
-
Daugaard, M.1
Baude, A.2
Fugger, K.3
Povlsen, L.K.4
Beck, H.5
Sørensen, C.S.6
Petersen, N.H.T.7
Sorensen, P.H.B.8
Lukas, C.9
Bartek, J.10
Lukas, J.11
Rohde, M.12
Jäättelä, M.13
-
23
-
-
84876027348
-
Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes
-
10.1093/nar/gkt074 23396443
-
Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes. Eidahl JO, Crowe BL, North JA, McKee CJ, Shkriabai N, Feng L, Plumb M, Graham RL, Gorelick RJ, Hess S, Poirier MG, Foster MP, Kvaratskhelia M, Nucleic Acids Res 2013 41 3924 3936 10.1093/nar/gkt074 23396443
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 3924-3936
-
-
Eidahl, J.O.1
Crowe, B.L.2
North, J.A.3
McKee, C.J.4
Shkriabai, N.5
Feng, L.6
Plumb, M.7
Graham, R.L.8
Gorelick, R.J.9
Hess, S.10
Poirier, M.G.11
Foster, M.P.12
Kvaratskhelia, M.13
-
24
-
-
34848911602
-
Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4
-
DOI 10.1016/j.cell.2007.08.016, PII S0092867407010793
-
Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4. Vermeulen M, Mulder KW, Denissov S, Pijnappel WWMP, van Schaik FMA, Varier RA, Baltissen MPA, Stunnenberg HG, Mann M, Timmers HTM, Cell 2007 131 58 69 10.1016/j.cell.2007.08.016 17884155 (Pubitemid 47498531)
-
(2007)
Cell
, vol.131
, Issue.1
, pp. 58-69
-
-
Vermeulen, M.1
Mulder, K.W.2
Denissov, S.3
Pijnappel, W.W.M.P.4
Van Schaik, F.M.A.5
Varier, R.A.6
Baltissen, M.P.A.7
Stunnenberg, H.G.8
Mann, M.9
Timmers, H.Th.M.10
-
25
-
-
29044449057
-
DNA binding domains and nuclear localization signal of LEDGF: Contribution of two helix-turn-helix (HTH)-like domains and a stretch of 58 amino acids of the N-terminal to the trans-activation potential of LEDGF
-
DOI 10.1016/j.jmb.2005.10.054, PII S002228360501301X
-
DNA-binding domains and nuclear localization signal of LEDGF: contribution of two helix-turn-helix (HTH)-like domains and a stretch of 58 amino acids of the N-terminal to the trans-activation potential of LEDGF. Singh DP, Kubo E, Takamura Y, Shinohara T, Kumar A, Chylack LT, Fatma N, J Mol Biol 2006 355 379 394 10.1016/j.jmb.2005.10.054 16318853 (Pubitemid 41786967)
-
(2006)
Journal of Molecular Biology
, vol.355
, Issue.3
, pp. 379-394
-
-
Singh, D.P.1
Kubo, E.2
Takamura, Y.3
Shinohara, T.4
Kumar, A.5
Chylack Jr., L.T.6
Fatma, N.7
-
26
-
-
33847386172
-
The Site-Specific Installation of Methyl-Lysine Analogs into Recombinant Histones
-
DOI 10.1016/j.cell.2006.12.041, PII S0092867407001158
-
The site-specific installation of methyl-lysine analogs into recombinant histones. Simon MD, Chu F, Racki LR, de la Cruz CC, Burlingame AL, Panning B, Narlikar GJ, Shokat KM, Cell 2007 128 1003 1012 10.1016/j.cell.2006.12.041 17350582 (Pubitemid 46341408)
-
(2007)
Cell
, vol.128
, Issue.5
, pp. 1003-1012
-
-
Simon, M.D.1
Chu, F.2
Racki, L.R.3
De La Cruz, C.C.4
Burlingame, A.L.5
Panning, B.6
Narlikar, G.J.7
Shokat, K.M.8
-
27
-
-
79952347049
-
The transcriptional co-activator LEDGF/p75 displays a dynamic scan-and-lock mechanism for chromatin tethering
-
10.1093/nar/gkq933 20974633
-
The transcriptional co-activator LEDGF/p75 displays a dynamic scan-and-lock mechanism for chromatin tethering. Hendrix J, Gijsbers R, De Rijck J, Voet A, Hotta J-I, McNeely M, Hofkens J, Debyser Z, Engelborghs Y, Nucleic Acids Res 2011 39 1310 1325 10.1093/nar/gkq933 20974633
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1310-1325
-
-
Hendrix, J.1
Gijsbers, R.2
De Rijck, J.3
Voet, A.4
Hotta, J.-I.5
McNeely, M.6
Hofkens, J.7
Debyser, Z.8
Engelborghs, Y.9
-
28
-
-
79961085477
-
Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR
-
10.1073/pnas.1105848108 21730181
-
Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR. Kato H, van Ingen H, Zhou B-R, Feng H, Bustin M, Kay LE, Bai Y, Proc Natl Acad Sci USA 2011 108 12283 12288 10.1073/pnas.1105848108 21730181
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 12283-12288
-
-
Kato, H.1
Van Ingen, H.2
Zhou, B.-R.3
Feng, H.4
Bustin, M.5
Kay, L.E.6
Bai, Y.7
-
29
-
-
0041930989
-
13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes
-
DOI 10.1021/ja030153x
-
Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes. Tugarinov V, Hwang PM, Ollerenshaw JE, Kay LE, J Am Chem Soc 2003 125 10420 10428 10.1021/ja030153x 12926967 (Pubitemid 37022252)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.34
, pp. 10420-10428
-
-
Tugarinov, V.1
Hwang, P.M.2
Ollerenshaw, J.E.3
Kay, L.E.4
-
31
-
-
1442300995
-
Polymer Models of Protein Stability, Folding, and Interactions
-
DOI 10.1021/bi036269n
-
Polymer models of protein stability, folding, and interactions. Zhou H-X, Biochemistry 2004 43 2141 2154 10.1021/bi036269n 14979710 (Pubitemid 38279959)
-
(2004)
Biochemistry
, vol.43
, Issue.8
, pp. 2141-2154
-
-
Zhou, H.-X.1
-
32
-
-
4344592378
-
Fragment-based lead discovery
-
Fragment-based lead discovery. Rees DC, Congreve M, Murray CW, Carr R, Nat Rev Mol Cell Biol 2004 3 660 672 (Pubitemid 39173507)
-
(2004)
Nature Reviews Drug Discovery
, vol.3
, Issue.8
, pp. 660-672
-
-
Ress, D.C.1
Congreve, M.2
Murray, C.W.3
Carr, R.4
-
33
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
DOI 10.1021/ja026939x
-
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. Dominguez C, Boelens R, Bonvin AMJJ, J Am Chem Soc 2003 125 1731 1737 10.1021/ja026939x 12580598 (Pubitemid 36232568)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.7
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.J.J.3
-
34
-
-
79953839232
-
A multidomain flexible docking approach to deal with large conformational changes in the modeling of biomolecular complexes
-
10.1016/j.str.2011.01.014 21481778
-
A multidomain flexible docking approach to deal with large conformational changes in the modeling of biomolecular complexes. Karaca E, Bonvin AMJJ, Structure 2011 19 555 565 10.1016/j.str.2011.01.014 21481778
-
(2011)
Structure
, vol.19
, pp. 555-565
-
-
Karaca, E.1
Bonvin, A.2
-
35
-
-
79960207639
-
Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain
-
10.1093/nar/gkr088 21345933
-
Nuclear protein LEDGF/p75 recognizes supercoiled DNA by a novel DNA-binding domain. Tsutsui KM, Sano K, Hosoya O, Miyamoto T, Tsutsui K, Nucleic Acids Res 2011 39 5067 5081 10.1093/nar/gkr088 21345933
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 5067-5081
-
-
Tsutsui, K.M.1
Sano, K.2
Hosoya, O.3
Miyamoto, T.4
Tsutsui, K.5
-
36
-
-
56449119832
-
Identification and characterization of PWWP domain residues critical for LEDGF/p75 chromatin binding and human immunodeficiency virus type 1 infectivity
-
10.1128/JVI.01561-08 18799576
-
Identification and characterization of PWWP domain residues critical for LEDGF/p75 chromatin binding and human immunodeficiency virus type 1 infectivity. Shun M-C, Botbol Y, Li X, Di Nunzio F, Daigle JE, Yan N, Lieberman J, Lavigne M, Engelman A, J Virol 2008 82 11555 11567 10.1128/JVI.01561-08 18799576
-
(2008)
J Virol
, vol.82
, pp. 11555-11567
-
-
Shun, M.-C.1
Botbol, Y.2
Li, X.3
Di Nunzio, F.4
Daigle, J.E.5
Yan, N.6
Lieberman, J.7
Lavigne, M.8
Engelman, A.9
-
37
-
-
77955423898
-
Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain
-
10.1038/nsmb.1856 20657587
-
Corecognition of DNA and a methylated histone tail by the MSL3 chromodomain. Kim D, Blus BJ, Chandra V, Huang P, Rastinejad F, Khorasanizadeh S, Nat Struct Mol Biol 2010 17 1027 1029 10.1038/nsmb.1856 20657587
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1027-1029
-
-
Kim, D.1
Blus, B.J.2
Chandra, V.3
Huang, P.4
Rastinejad, F.5
Khorasanizadeh, S.6
-
38
-
-
84863230348
-
Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA
-
Solution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA. Qiu Y, Zhang W, Zhao C, Wang Y, Wang W, Zhang J, Zhang Z, Li G, Shi Y, Tu X, Wu J, Biochem J 2011 442 527 538
-
(2011)
Biochem J
, vol.442
, pp. 527-538
-
-
Qiu, Y.1
Zhang, W.2
Zhao, C.3
Wang, Y.4
Wang, W.5
Zhang, J.6
Zhang, Z.7
Li, G.8
Shi, Y.9
Tu, X.10
Wu, J.11
-
39
-
-
48149105342
-
Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3
-
10.1016/j.str.2008.04.015 18682226
-
Structural insight into the recognition of the H3K4me3 mark by the TFIID subunit TAF3. van Ingen H, van Schaik FMA, Wienk H, Ballering J, Rehmann H, Dechesne AC, Kruijzer JAW, Liskamp RMJ, Timmers HTM, Boelens R, Structure 2008 16 1245 1256 10.1016/j.str.2008.04.015 18682226
-
(2008)
Structure
, vol.16
, pp. 1245-1256
-
-
Van Ingen, H.1
Van Schaik, F.M.A.2
Wienk, H.3
Ballering, J.4
Rehmann, H.5
Dechesne, A.C.6
Kruijzer, J.A.W.7
Liskamp, R.M.J.8
Timmers, H.T.M.9
Boelens, R.10
-
40
-
-
1542334851
-
Reconstitution of Nucleosome Core Particles from Recombinant Histones and DNA
-
DOI 10.1016/S0076-6879(03)75002-2
-
Reconstitution of nucleosome core particles from recombinant histones and DNA. Dyer PN, Edayathumangalam RS, White CL, Bao Y, Chakravarthy S, Muthurajan UM, Luger K, Meth Enzymol 2004 375 23 44 14870657 (Pubitemid 38124858)
-
(2004)
Methods in Enzymology
, vol.375
, pp. 23-44
-
-
Dyer, P.N.1
Edayathumangalam, R.S.2
White, C.L.3
Bao, Y.4
Chakravarthy, S.5
Muthurajan, U.M.6
Luger, K.7
-
41
-
-
45349103038
-
Mps1 kinase activity restrains anaphase during an unperturbed mitosis and targets Mad2 to kinetochores
-
DOI 10.1083/jcb.200712028
-
Mps1 kinase activity restrains anaphase during an unperturbed mitosis and targets Mad2 to kinetochores. Tighe A, Staples O, Taylor S, J Cell Biol 2008 181 893 901 10.1083/jcb.200712028 18541701 (Pubitemid 351846823)
-
(2008)
Journal of Cell Biology
, vol.181
, Issue.6
, pp. 893-901
-
-
Tighe, A.1
Staples, O.2
Taylor, S.3
-
42
-
-
51549087123
-
Probing nucleosome function: A highly versatile library of synthetic histone H3 and H4 mutants
-
10.1016/j.cell.2008.07.019 18805098
-
Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD, Cell 2008 134 1066 1078 10.1016/j.cell.2008.07.019 18805098
-
(2008)
Cell
, vol.134
, pp. 1066-1078
-
-
Dai, J.1
Hyland, E.M.2
Yuan, D.S.3
Huang, H.4
Bader, J.S.5
Boeke, J.D.6
-
43
-
-
77955343194
-
Chromatin interaction of TATA-binding protein is dynamically regulated in human cells
-
10.1242/jcs.064097 20627952
-
Chromatin interaction of TATA-binding protein is dynamically regulated in human cells. de Graaf P, Mousson F, Geverts B, Scheer E, Tora L, Houtsmuller AB, Timmers HTM, J Cell Sci 2010 123 2663 2671 10.1242/jcs.064097 20627952
-
(2010)
J Cell Sci
, vol.123
, pp. 2663-2671
-
-
De Graaf, P.1
Mousson, F.2
Geverts, B.3
Scheer, E.4
Tora, L.5
Houtsmuller, A.B.6
Timmers, H.T.M.7
-
44
-
-
78649793093
-
Efficient double fragmentation ChIP-seq provides nucleotide resolution protein-DNA binding profiles
-
10.1371/journal.pone.0015092 21152096
-
Efficient double fragmentation ChIP-seq provides nucleotide resolution protein-DNA binding profiles. Mokry M, Hatzis P, de Bruijn E, Koster J, Versteeg R, Schuijers J, van de Wetering M, Guryev V, Clevers H, Cuppen E, PLoS One 2010 5 15092 10.1371/journal.pone.0015092 21152096
-
(2010)
PLoS One
, vol.5
, pp. 515092
-
-
Mokry, M.1
Hatzis, P.2
De Bruijn, E.3
Koster, J.4
Versteeg, R.5
Schuijers, J.6
Van De Wetering, M.7
Guryev, V.8
Clevers, H.9
Cuppen, E.10
-
45
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
10.1093/bioinformatics/btp324 19451168
-
Fast and accurate short read alignment with Burrows-Wheeler transform. Li H, Durbin R, Bioinformatics 2009 25 1754 1760 10.1093/bioinformatics/btp324 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
46
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
8520220
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes. Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A, J Biomol NMR 1995 6 277 293 8520220
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
47
-
-
4644234334
-
Mars - Robust automatic backbone assignment of proteins
-
DOI 10.1023/B:JNMR.0000042954.99056.ad
-
Mars-robust automatic backbone assignment of proteins. Jung YS, Zweckstetter M, J Biomol NMR 2004 30 11 23 15452431 (Pubitemid 39295128)
-
(2004)
Journal of Biomolecular NMR
, vol.30
, Issue.1
, pp. 11-23
-
-
Jung, Y.-S.1
Zweckstetter, M.2
-
48
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
10.1007/s10858-009-9333-z 19548092
-
TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. Shen Y, Delaglio F, Cornilescu G, Bax A, J Biomol NMR 2009 44 213 223 10.1007/s10858-009-9333-z 19548092
-
(2009)
J Biomol NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
49
-
-
33749524593
-
Automated protein structure determination from NMR spectra
-
DOI 10.1021/ja061136l
-
Automated protein structure determination from NMR spectra. López-Méndez B, Güntert P, J Am Chem Soc 2006 128 13112 13122 10.1021/ja061136l 17017791 (Pubitemid 44527681)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.40
, pp. 13112-13122
-
-
Lopez-Mendez, B.1
Guntert, P.2
-
50
-
-
0036308102
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA
-
DOI 10.1016/S0022-2836(02)00241-3
-
Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA. Herrmann T, Güntert P, Wüthrich K, J Mol Biol 2002 319 209 227 10.1016/S0022-2836(02)00241-3 12051947 (Pubitemid 34729497)
-
(2002)
Journal of Molecular Biology
, vol.319
, Issue.1
, pp. 209-227
-
-
Herrmann, T.1
Guntert, P.2
Wuthrich, K.3
-
51
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Crystallography & NMR system: a new software suite for macromolecular structure determination. Brünger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL, Acta Crystallogr D: Biol Crystallogr 1998 54 905 921
-
(1998)
Acta Crystallogr D: Biol Crystallogr
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
52
-
-
21044449889
-
RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank
-
DOI 10.1002/prot.20408
-
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CAEM, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AMJJ, Proteins 2005 59 662 672 10.1002/prot.20408 15822098 (Pubitemid 40695843)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.59
, Issue.4
, pp. 662-672
-
-
Nederveen, A.J.1
Doreleijers, J.F.2
Vranken, W.3
Miller, Z.4
Spronk, C.A.E.M.5
Nabuurs, S.B.6
Guntert, P.7
Livny, M.8
Markley, J.L.9
Nilges, M.10
Ulrich, E.L.11
Kaptein, R.12
Bonvin, A.M.J.J.13
-
53
-
-
84868207831
-
CING: An integrated residue-based structure validation program suite
-
10.1007/s10858-012-9669-7 22986687
-
CING: an integrated residue-based structure validation program suite. Doreleijers JF, da Silva Sousa AW, Krieger E, Nabuurs SB, Spronk CAEM, Stevens TJ, Vranken WF, Vriend G, Vuister GW, J Biomol NMR 2012 54 267 283 10.1007/s10858-012-9669-7 22986687
-
(2012)
J Biomol NMR
, vol.54
, pp. 267-283
-
-
Doreleijers, J.F.1
Da Silva Sousa, A.W.2
Krieger, E.3
Nabuurs, S.B.4
Spronk, C.5
Stevens, T.J.6
Vranken, W.F.7
Vriend, G.8
Vuister, G.W.9
-
54
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
Electrostatics of nanosystems: application to microtubules and the ribosome. Baker NA, Sept D, Joseph S, Holst MJ, McCammon JA, Proc Natl Acad Sci USA 2001 98 10037 10041 10.1073/pnas.181342398 11517324 (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
55
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
10.1038/nprot.2007.406 18007608
-
Version 1.2 of the crystallography and NMR system. Brunger AT, Nat Protoc 2007 2 2728 2733 10.1038/nprot.2007.406 18007608
-
(2007)
Nat Protoc
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
|