LibSBMLSim: A reference implementation of fully functional SBML simulator

Bioinformatics

Volumn 29, Issue 11, 2013, Pages 1474-1476

  Takizawa, Hiromu ^a   Nakamura, Kazushige ^a   Tabira, Akito ^a   Chikahara, Yoichi ^a   Matsui, Tatsuhiro ^a   Hiroi, Noriko ^a   Funahashi, Akira ^a  

^a KEIO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; COMPUTER SIMULATION; METHODOLOGY; SYSTEMS BIOLOGY;

COMPUTER SIMULATION; PROGRAMMING LANGUAGES; SOFTWARE; SYSTEMS BIOLOGY;

EID: 84878290340     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt157     Document Type: Article

References (5)

1. Bornstein, B.J. et al. (2008) LibSBML: an API library for SBML. Bioinformatics, 24, 880-881.
2. Hucka, M. et al. (2004) Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project. Syst. Biol., 1, 41-53.
3. Hucka, M. et al. (2008) Systems Biology Markup Language (SBML) Level 2: structures and facilities for model definitions. Nat. Precedings, [Epub ahead of print, doi: 10.1038/npre.2008.2715.1, November 5, 2007].
4. Hucka, M. et al. (2011) A Profile of Today's SBML-Compatible Software. In: e-Science Workshops, 2011 IEEE Seventh International Conference on e-Science. IEEE, Stockholm, Sweden, pp. 143-150.
5. Hairer, E. et al. (1993) Solving Ordinary Differential Equations. I: Nonstiff Problems. 2nd edn. Springer-Verlag, Berlin.