메뉴 건너뛰기




Volumn 80, Issue 2, 2013, Pages 241-261

Abstraction and the organization of mechanisms

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84878036927     PISSN: 00318248     EISSN: None     Source Type: Journal    
DOI: 10.1086/670300     Document Type: Article
Times cited : (181)

References (49)
  • 1
    • 77957366856 scopus 로고    scopus 로고
    • A General Mechanism for Network-Dosage Compensation in Gene Circuits
    • Acar, Murat, Bernardo F. Pando, Frances H. Arnold, Michael B. Elowitz, and Alexander van Oudenaarden. 2010. "A General Mechanism for Network-Dosage Compensation in Gene Circuits." Science 329:1656-60.
    • (2010) Science , vol.329 , pp. 1656-1660
    • Acar, M.1    Pando, B.F.2    Arnold, F.H.3    Elowitz, M.B.4    van Oudenaarden, A.5
  • 3
    • 34249079154 scopus 로고    scopus 로고
    • Network Motifs: Theory and Experimental Approaches
    • Alon, Uri. 2007b. "Network Motifs: Theory and Experimental Approaches." Nature Reviews Genetics 8:450-61.
    • (2007) Nature Reviews Genetics , vol.8 , pp. 450-461
    • Alon, U.1
  • 4
    • 4344715809 scopus 로고    scopus 로고
    • Comment on 'Network Motifs: Simple Building Blocks of Complex Networks' and 'Superfamilies of Evolved and Designed Networks.'
    • Artzy-Randrup, Yael, Sarel J. Fleishman, Nir Ben-Tal, and Lewi Stone. 2004. "Comment on 'Network Motifs: Simple Building Blocks of Complex Networks' and 'Superfamilies of Evolved and Designed Networks.'" Science 305:1107.
    • (2004) Science , vol.305 , pp. 1107
    • Artzy-Randrup, Y.1    Fleishman, S.J.2    Ben-Tal, N.3    Stone, L.4
  • 5
    • 0038483826 scopus 로고    scopus 로고
    • Emergence of Scaling in Random Networks
    • Barabási, Albert-László, and Réka Albert. 1999. "Emergence of Scaling in Random Networks." Science 286:509-12.
    • (1999) Science , vol.286 , pp. 509-512
    • Barabási, A.-L.1    Albert, R.2
  • 6
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in Simple Biochemical Networks
    • Barkai, N., and S. Leibler. 1997. "Robustness in Simple Biochemical Networks." Nature 387: 913-17.
    • (1997) Nature , vol.387 , pp. 913-917
    • Barkai, N.1    Leibler, S.2
  • 9
    • 77957135953 scopus 로고    scopus 로고
    • Dynamic Mechanistic Explanation: Computational Modeling of Circadian Rhythms as an Exemplar for Cognitive Science
    • Bechtel, William, and Adele Abrahamsen. 2010. "Dynamic Mechanistic Explanation: Computational Modeling of Circadian Rhythms as an Exemplar for Cognitive Science." Studies in History and Philosophy of Science A 41:321-33.
    • (2010) Studies In History and Philosophy of Science A , vol.41 , pp. 321-333
    • Bechtel, W.1    Abrahamsen, A.2
  • 10
    • 79960338202 scopus 로고    scopus 로고
    • Complex Biological Mechanisms: Cyclic, Oscillatory, and Autonomous
    • ed. Clifford A. Hooker, New York: Elsevier
    • Bechtel, William, and Adele Abrahamsen. 2011. "Complex Biological Mechanisms: Cyclic, Oscillatory, and Autonomous." In Philosophy of Complex Systems: Handbook of the Philosophy of Science, ed. Clifford A. Hooker, 257-85. New York: Elsevier.
    • (2011) Philosophy of Complex Systems: Handbook of the Philosophy of Science , pp. 257-285
    • Bechtel, W.1    Abrahamsen, A.2
  • 13
    • 62749135546 scopus 로고    scopus 로고
    • Physical Law and Mechanistic Explanation in the Hodgkin and Huxley Model of the Action Potential
    • Craver, Carl F. 2008. "Physical Law and Mechanistic Explanation in the Hodgkin and Huxley Model of the Action Potential." Philosophy of Science 75:1022-33.
    • (2008) Philosophy of Science , vol.75 , pp. 1022-1033
    • Craver, C.F.1
  • 14
    • 0000798871 scopus 로고
    • Functional Analysis
    • Cummins, Robert. 1975. "Functional Analysis." Journal of Philosophy 72:741-65.
    • (1975) Journal of Philosophy , vol.72 , pp. 741-765
    • Cummins, R.1
  • 19
    • 33947090652 scopus 로고
    • Oscillations in Chemical Systems
    • Pt. 2, "Thorough Analysis of Temporal Oscillation in the Bromate-Cerium-Malonic Acid System"
    • Field, Richard J., Endre Körös, and Richard M. Noyes. 1972. "Oscillations in Chemical Systems." Pt. 2, "Thorough Analysis of Temporal Oscillation in the Bromate-Cerium-Malonic Acid System." Journal of the American Chemical Society 94:8649-64.
    • (1972) Journal of the American Chemical Society , vol.94 , pp. 8649-8664
    • Field, R.J.1    Körös, E.2    Noyes, R.M.3
  • 20
    • 79953052399 scopus 로고    scopus 로고
    • The Covering Law Model Applied to Dynamical Cognitive Science: A Comment on Joel Walmsley
    • Gervais, Raoul, and Erik Weber. 2011. "The Covering Law Model Applied to Dynamical Cognitive Science: A Comment on Joel Walmsley." Minds and Machines 21:33-39.
    • (2011) Minds and Machines , vol.21 , pp. 33-39
    • Gervais, R.1    Weber, E.2
  • 21
    • 79953091142 scopus 로고    scopus 로고
    • Abstractions, Idealizations, and Evolutionary Biology
    • ed. Anouk Barberousse, Michel Morange, and Thomas Pradeu, Boston: Springer
    • Godfrey-Smith, Peter. 2009. "Abstractions, Idealizations, and Evolutionary Biology." In Mapping the Future of Biology: Evolving Concepts and Theories, ed. Anouk Barberousse, Michel Morange, and Thomas Pradeu, 47-55. Boston: Springer.
    • (2009) Mapping the Future of Biology: Evolving Concepts and Theories , pp. 47-55
    • Godfrey-Smith, P.1
  • 23
    • 33847225317 scopus 로고    scopus 로고
    • Idealization and Abstraction: A Framework
    • ed. Martin Thomson-Jones and Nancy Cartwright, Amsterdam: Rodopi
    • Jones, Martin R. 2005. "Idealization and Abstraction: A Framework." In Idealization 12: Correcting the Model, ed. Martin Thomson-Jones and Nancy Cartwright, 173-217. Amsterdam: Rodopi.
    • (2005) Idealization 12: Correcting the Model , pp. 173-217
    • Jones, M.R.1
  • 24
    • 33746428728 scopus 로고    scopus 로고
    • A Coherent Feed-Forward Loop with a Sum Input Function Prolongs Flagella Expression in Escherichia Coli
    • Kalir, Shiraz, Shmoolik Mangan, and Uri Alon. 2005. "A Coherent Feed-Forward Loop with a Sum Input Function Prolongs Flagella Expression in Escherichia Coli." Molecular Systems Biology 1:2005.0006.
    • (2005) Molecular Systems Biology , vol.1
    • Kalir, S.1    Mangan, S.2    Uri, A.3
  • 25
    • 0000477047 scopus 로고
    • Explanatory Unification
    • Kitcher, Philip. 1981. "Explanatory Unification." Philosophy of Science 48:507-31.
    • (1981) Philosophy of Science , vol.48 , pp. 507-531
    • Kitcher, P.1
  • 26
    • 40749096575 scopus 로고
    • Coupled Oscillators and the Design of Central Pattern Generators
    • Kopell, Nancy, and G. Bard Ermentrout. 1988. "Coupled Oscillators and the Design of Central Pattern Generators." Mathematical Biosciences 90:87-109.
    • (1988) Mathematical Biosciences , vol.90 , pp. 87-109
    • Kopell, N.1    Bard Ermentrout, G.2
  • 31
    • 32044462728 scopus 로고    scopus 로고
    • The Incoherent Feed-Forward Loop Accelerates the Response-Time of the gal System of Escherichia Coli
    • Mangan, Shmoolik, Shalev Itzkovitz, Alon Zaslaver, and Uri Alon. 2006. "The Incoherent Feed-Forward Loop Accelerates the Response-Time of the gal System of Escherichia Coli." Journal of Molecular Biology 356:1073-81.
    • (2006) Journal of Molecular Biology , vol.356 , pp. 1073-1081
    • Mangan, S.1    Itzkovitz, S.2    Zaslaver, A.3    Alon, U.4
  • 32
    • 0242364231 scopus 로고    scopus 로고
    • The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks
    • Mangan, Shmoolik, Alon Zaslaver, and Uri Alon. 2003. "The Coherent Feedforward Loop Serves as a Sign-Sensitive Delay Element in Transcription Networks." Journal of Molecular Biology 334:197-204.
    • (2003) Journal of Molecular Biology , vol.334 , pp. 197-204
    • Mangan, S.1    Zaslaver, A.2    Alon, U.3
  • 34
    • 0038718854 scopus 로고    scopus 로고
    • The Structure and Function of Complex Networks
    • Newman, Mark E. J. 2003. "The Structure and Function of Complex Networks." SIAM Review 45:167-256.
    • (2003) SIAM Review , vol.45 , pp. 167-256
    • Newman, M.E.J.1
  • 37
    • 79957252115 scopus 로고    scopus 로고
    • Abstract Objects
    • ed. Edward N. Zalta. Palo Alto, CA: Stanford University
    • Rosen, Gideon. 2001. "Abstract Objects." In The Stanford Encyclopedia of Philosophy, ed. Edward N. Zalta. Palo Alto, CA: Stanford University.
    • (2001) The Stanford Encyclopedia of Philosophy
    • Rosen, G.1
  • 38
    • 33745998748 scopus 로고    scopus 로고
    • Are Network Motifs the Spandrels of Cellular Complexity?
    • Solé, Ricard V., and Sergi Valverde. 2006. "Are Network Motifs the Spandrels of Cellular Complexity?" Trends in Ecology and Evolution 21:419-22.
    • (2006) Trends In Ecology and Evolution , vol.21 , pp. 419-422
    • Solé, R.V.1    Valverde, S.2
  • 39
    • 84878051492 scopus 로고    scopus 로고
    • Causation, Prediction
    • 2nd ed. Cambridge, MA: MIT Press
    • Spirtes, Peter, Clark N. Glymour, and Richard Scheines. 2000. Causation, Prediction, and Search. 2nd ed. Cambridge, MA: MIT Press.
    • (2000) And Search
    • Spirtes, P.1    Glymour, C.N.2    Scheines, R.3
  • 42
    • 84875349122 scopus 로고    scopus 로고
    • Reorganization of Brain Networks in Aging and Age-Related Diseases
    • Sun, Junfeng, Shanbao Tong, and Guo-Yang Yang. 2012. "Reorganization of Brain Networks in Aging and Age-Related Diseases." Aging and Disease 3:181-93.
    • (2012) Aging and Disease , vol.3 , pp. 181-193
    • Sun, J.1    Tong, S.2    Yang, G.-Y.3
  • 43
    • 35748958993 scopus 로고    scopus 로고
    • Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network
    • Ward, Jonathan J., and Janet M. Thornton. 2007. "Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network." PLoS Computational Biology 3:e198.
    • (2007) PLoS Computational Biology , vol.3
    • Ward, J.J.1    Thornton, J.M.2
  • 44
    • 0032482432 scopus 로고    scopus 로고
    • Collective Dynamics of Small Worlds
    • Watts, Duncan, and Steven Strogatz. 1998. "Collective Dynamics of Small Worlds." Nature 393: 440-42.
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.1    Strogatz, S.2
  • 46
    • 0003022805 scopus 로고
    • Forms of Aggregativity
    • ed. Alan Donagan, Anthony N. Perovich, and Mmichael V.Wedin, Dordrecht: Reidel
    • Wimsatt, William C. 1986. "Forms of Aggregativity." In Human Nature and Natural Knowledge, ed. Alan Donagan, Anthony N. Perovich, and Mmichael V.Wedin, 259-93. Dordrecht: Reidel.
    • (1986) Human Nature and Natural Knowledge , pp. 259-293
    • Wimsatt, W.C.1
  • 47
    • 0014108715 scopus 로고
    • Biological Rhythms and the Behavior of Populations of Coupled Oscillators
    • Winfree, Arthur T. 1967. "Biological Rhythms and the Behavior of Populations of Coupled Oscillators." Journal of Theoretical Biology 16:15-42.
    • (1967) Journal of Theoretical Biology , vol.16 , pp. 15-42
    • Winfree, A.T.1
  • 49
    • 1842580761 scopus 로고    scopus 로고
    • Functional and Topological Characterization of Protein Interaction Networks
    • Yook, Soon-Hyung, Zoltán N. Oltvai, and Albert-László Barabási. 2004. "Functional and Topological Characterization of Protein Interaction Networks." Proteomics 4:928-42.
    • (2004) Proteomics , vol.4 , pp. 928-942
    • Yook, S.-H.1    Oltvai, Z.N.2    Barabási, A.-L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.