Non-Equilibrium Polar Localization of Proteins in Bacterial Cells

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Saberi, Saeed ^a   Emberly, Eldon ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; BACTERIAL PROTEIN; PROTEIN BINDING;

ARTICLE; BACTERIAL CELL; CELL DIVISION; CELL ENERGY; CELL GROWTH; CELL VOLUME; CELLULAR PARAMETERS; CONCENTRATION (PARAMETERS); DNA DENSITY; MODEL; PROTEIN AGGREGATION; PROTEIN LOCALIZATION; BACTERIA; BIOLOGICAL MODEL; ENERGY METABOLISM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PROTEIN TRANSPORT;

BACTERIA; BACTERIAL PROTEINS; ENERGY METABOLISM; MODELS, BIOLOGICAL; PROTEIN BINDING; PROTEIN TRANSPORT;

EID: 84877944371     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0064075     Document Type: Article

References (29)

1. Ramamurthi KS, Losick R, (2009) Negative membrane curvature as a cue for subcellular localization of a bacterial protein. Proceedings of the National Academy of Sciences of the United States of America 106: 13541-13545 10.1073/pnas.0906851106; 10.1073/pnas.0906851106.
2. Lenarcic R, Halbedel S, Visser L, Shaw M, Wu LJ, et al. (2009) Localisation of DivIVA by targeting to negatively curved membranes. The EMBO Journal 28: 2272-2282 10.1038/emboj.2009.129; 10.1038/emboj.2009.129.
3. Alley MR, Maddock JR, Shapiro L, (1992) Polar localization of a bacterial chemoreceptor. Genes & Development 6: 825-836.
4. Wang H, Wingreen NS, Mukhopadhyay R, (2008) Self-organized periodicity of protein clusters in growing bacteria. Physical Review Letters 101: 218101.
5. Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, et al. (2009) Self-organization of the escherichia coli chemotaxis network imaged with super-resolution light microscopy. PLoS Biology 7: e1000137 10.1371/journal.pbio.1000137; 10.1371/journal.pbio.1000137.
6. Thiem S, Sourjik V, (2008) Stochastic assembly of chemoreceptor clusters in escherichia coli. Molecular Microbiology 68: 1228-1236 10.1111/j.1365-2958.2008.06227.x; 10.1111/j.1365-2958.2008.06227.x.
7. Howard M, (2004) A mechanism for polar protein localization in bacteria. Journal of Molecular Biology 335: 655-663.
8. Huang KC, Mukhopadhyay R, Wingreen NS, (2006) A curvature-mediated mechanism for localization of lipids to bacterial poles. PLoS Computational Biology 2: e151 10.1371/journal.pcbi.0020151.
9. Ebersbach G, Briegel A, Jensen GJ, Jacobs-Wagner C, (2008) A self-associating protein critical for chromosome attachment, division, and polar organization in caulobacter. Cell 134: 956-968 10.1016/j.cell.2008.07.016; 10.1016/j.cell.2008.07.016.
10. Bowman GR, Comolli LR, Zhu J, Eckart M, Koenig M, et al. (2008) A polymeric protein anchors the chromosomal origin/ParB complex at a bacterial cell pole. Cell 134: 945-955 10.1016/j.cell.2008.07.015; 10.1016/j.cell.2008.07.015.
11. Bowman GR, Comolli LR, Gaietta GM, Fero M, Hong SH, et al. (2010) Caulobacter PopZ forms a polar subdomain dictating sequential changes in pole composition and function. Molecular Microbiology 76: 173-189 10.1111/j.1365-2958.2010.07088.x; 10.1111/j.1365-2958.2010.07088.x.
12. Winkler J, Seybert A, Konig L, Pruggnaller S, Haselmann U, et al. (2010) Quantitative and spatio-temporal features of protein aggregation in escherichia coli and consequences on protein quality control and cellular ageing. The EMBO Journal 29: 910-923 10.1038/emboj.2009.412; 10.1038/emboj.2009.412.
13. Maisonneuve E, Fraysse L, Moinier D, Dukan S, (2008) Existence of abnormal protein aggregates in healthy escherichia coli cells. Journal of Bacteriology 190: 887-893 10.1128/JB.01603-07.
14. Thomas JG, Baneyx F, (1996) Protein misfolding and inclusion body formation in recombinant escherichia coli cells overexpressing heat-shock proteins. The Journal of Biological Chemistry 271: 11141-11147.
15. Saberi S, Emberly E, (2010) Chromosome driven spatial patterning of proteins in bacteria. PLoS Computational Biology 6: e1000986 10.1371/journal.pcbi.1000986.
16. Jun S, Mulder B, (2006) Entropy-driven spatial organization of highly confined polymers: Lessons for the bacterial chromosome. Proceedings of the National Academy of Sciences of the United States of America 103: 12388-12393 10.1073/pnas.0605305103.
17. Pelletier J, Halvorsen K, Ha BY, Paparcone R, Sandler SJ, et al. (2012) Physical manipulation of the escherichia coli chromosome reveals its soft nature. Proceedings of the National Academy of Sciences of the United States of America 109: E2649-56 10.1073/pnas.1208689109; 10.1073/pnas.1208689109.
18. Kuhlman TE, Cox EC, (2012) Gene location and DNA density determine transcription factor distributions in escherichia coli. Molecular Systems Biology 8: 610 10.1038/msb.2012.42.
19. Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, et al. (2005) Complete set of ORF clones of escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research. DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes 12: 291-299 10.1093/dnares/dsi012.
20. Landgraf D, Okumus B, Chien P, Baker TA, Paulsson J, (2012) Segregation of molecules at cell division reveals native protein localization. Nature Methods 9: 480-482 10.1038/nmeth.1955; 10.1038/nmeth.1955.
21. Ping L, Mavridou DA, Emberly E, Westermann M, Ferguson SJ, (2012) Vital dye reaction and granule localization in periplasm of escherichia coli. PloS One 7: e38427 10.1371/journal.pone.0038427; 10.1371/journal.pone.0038427.
22. Woldringh C, Odjick T (1999) Structure of DNA within the bacterial cell: Physics and physiology. In: Charlebois R, editor. Organization of the Prokaryotic Genome.: American Society of Microbiology. 171.
23. Junier I, Herisson J, Kepes F, (2012) Genomic organization of evolutionarily correlated genes in bacteria: Limits and strategies. Journal of Molecular Biology 419: 369-386 10.1016/j.jmb.2012.03.009.
24. Buenemann M, Lenz P, (2010) A geometrical model for DNA organization in bacteria. PloS One 5: e13806 10.1371/journal.pone.0013806; 10.1371/journal.pone.0013806.
25. Montero Llopis P, Jackson AF, Sliusarenko O, Surovtsev I, Heinritz J, et al. (2010) Spatial organization of the flow of genetic information in bacteria. Nature 466: 77-81 10.1038/nature09152; 10.1038/nature09152.
26. Howard M, Rutenberg AD, de Vet S, (2001) Dynamic compartmentalization of bacteria: Accurate division in E. coli. Physical Review Letters 87: 278102.
27. Loose M, Fischer-Friedrich E, Ries J, Kruse K, Schwille P, (2008) Spatial regulators for bacterial cell division self-organize into surface waves in vitro. Science (New York, N.Y.) 320: 789-792 10.1126/science.1154413; 10.1126/science.1154413.
28. Huang KC, Meir Y, Wingreen NS, (2003) Dynamic structures in escherichia coli: Spontaneous formation of MinE rings and MinD polar zones. Proceedings of the National Academy of Sciences of the United States of America 100: 12724-12728 10.1073/pnas.2135445100.
29. Wang P, Robert L, Pelletier J, Dang WL, Taddei F, et al. (2010) Robust growth of escherichia coli. Current Biology: CB 20: 1099-1103 10.1016/j.cub.2010.04.045; 10.1016/j.cub.2010.04.045.