메뉴 건너뛰기




Volumn 20, Issue 3, 2013, Pages 1089-1098

Structural changes in the molecular sheets along (hk0) planes derived from cellulose Iβ by molecular dynamics simulations

Author keywords

Initial structure; Molecular dynamics (MD) simulation; Molecular sheet; Native cellulose; Structural formation mechanism

Indexed keywords

INITIAL STRUCTURES; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR SHEETS; NATIVE CELLULOSE; STRUCTURAL FORMATION;

EID: 84877588663     PISSN: 09690239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10570-013-9915-5     Document Type: Article
Times cited : (11)

References (30)
  • 1
    • 84857782391 scopus 로고    scopus 로고
    • Validating empirical force fields for molecular-level simulation
    • Bazooyar F, Momany FA, Bolton K (2012) Validating empirical force fields for molecular-level simulation. Comp Theor Chem 984: 119-127.
    • (2012) Comp Theor Chem , vol.984 , pp. 119-127
    • Bazooyar, F.1    Momany, F.A.2    Bolton, K.3
  • 2
    • 0019294080 scopus 로고
    • Cellulose biogenesis: polymerization and crystallization are coupled processes in Acetobacter xylinum
    • Benziman M, Haigler CH, Brown RM Jr, White AR, Cooper KM (1980) Cellulose biogenesis: polymerization and crystallization are coupled processes in Acetobacter xylinum. Proc Natl Acad Sci USA 77: 6678-6682.
    • (1980) Proc Natl Acad Sci USA , vol.77 , pp. 6678-6682
    • Benziman, M.1    Haigler, C.H.2    Brown Jr., R.M.3    White, A.R.4    Cooper, K.M.5
  • 4
    • 33749639505 scopus 로고    scopus 로고
    • Stepwise hydration of cellobiose by DFT method: 1. conformational and structural changes brought about by the addition of one to four water molecules
    • Bosma WB, Appell M, Willett JL, Momany FA (2006) Stepwise hydration of cellobiose by DFT method: 1. conformational and structural changes brought about by the addition of one to four water molecules. J. Mol. Struct.: THEOCHEM 776: 1-19.
    • (2006) J. Mol. Struct.: THEOCHEM , vol.776 , pp. 1-19
    • Bosma, W.B.1    Appell, M.2    Willett, J.L.3    Momany, F.A.4
  • 6
    • 0041945474 scopus 로고
    • Experimental induction of altered nonmicrofibrillar cellulose
    • Brown RM Jr, Haigler C, Cooper K (1982) Experimental induction of altered nonmicrofibrillar cellulose. Science 218: 1141-1142.
    • (1982) Science , vol.218 , pp. 1141-1142
    • Brown Jr., R.M.1    Haigler, C.2    Cooper, K.3
  • 7
    • 0000314877 scopus 로고
    • Cellulose I microfibril assembly: computational molecular mechanics energy analysis favours bonding by van der Waals forces as the initial step in crystallization
    • Cousins SK, Brown RM Jr (1995) Cellulose I microfibril assembly: computational molecular mechanics energy analysis favours bonding by van der Waals forces as the initial step in crystallization. Polymer 36: 3885-3888.
    • (1995) Polymer , vol.36 , pp. 3885-3888
    • Cousins, S.K.1    Brown Jr., R.M.2
  • 10
    • 84863860720 scopus 로고    scopus 로고
    • Combining computational chemistry and crystallography for a better understanding of the structure of cellulose
    • French AD (2012) Combining computational chemistry and crystallography for a better understanding of the structure of cellulose. Adv Carbohydr Chem Biochem 67: 19-93.
    • (2012) Adv Carbohydr Chem Biochem , vol.67 , pp. 19-93
    • French, A.D.1
  • 11
    • 84856955513 scopus 로고    scopus 로고
    • Conformational analysis of cellobiose by electronic structure theories
    • French AD, Johnson GP, Cramer CJ, Csonka DI (2012) Conformational analysis of cellobiose by electronic structure theories. Carbohydr Res 350: 68-76.
    • (2012) Carbohydr Res , vol.350 , pp. 68-76
    • French, A.D.1    Johnson, G.P.2    Cramer, C.J.3    Csonka, D.I.4
  • 12
    • 0016275528 scopus 로고
    • The structure of native cellulose
    • Gardner KH, Blackwell J (1974) The structure of native cellulose. Biopolymers 13: 1975-2001.
    • (1974) Biopolymers , vol.13 , pp. 1975-2001
    • Gardner, K.H.1    Blackwell, J.2
  • 13
    • 0041443983 scopus 로고
    • Electron diffraction analysis of the altered cellulose synthesized by Acetobacter xylinum in the presence of fluorescent brightening agents and direct dyes
    • Haigler CH, Chanzy H (1988) Electron diffraction analysis of the altered cellulose synthesized by Acetobacter xylinum in the presence of fluorescent brightening agents and direct dyes. J Ultrastruct Mol Struct Res 98: 299-311.
    • (1988) J Ultrastruct Mol Struct Res , vol.98 , pp. 299-311
    • Haigler, C.H.1    Chanzy, H.2
  • 14
    • 85016544316 scopus 로고
    • Plane lattice structure in amorphous region of cellulose fibers
    • Hayashi J, Masuda S, Watanabe S (1974) Plane lattice structure in amorphous region of cellulose fibers. Nippon Kagaku Kaishi 5: 948-954.
    • (1974) Nippon Kagaku Kaishi , vol.5 , pp. 948-954
    • Hayashi, J.1    Masuda, S.2    Watanabe, S.3
  • 15
    • 5544325949 scopus 로고
    • Degree of lateral order in various rayons as deduced from x-ray measurements
    • Hermans PH (1949) Degree of lateral order in various rayons as deduced from x-ray measurements. J Polym Sci 4: 145-151.
    • (1949) J Polym Sci , vol.4 , pp. 145-151
    • Hermans, P.H.1
  • 17
    • 60749117897 scopus 로고    scopus 로고
    • Disordered structure of native cellulose and its production origin
    • Horii F, Hirai F, Suzuki F (2005) Disordered structure of native cellulose and its production origin. Cellulose Commun 12: 179-183.
    • (2005) Cellulose Commun , vol.12 , pp. 179-183
    • Horii, F.1    Hirai, F.2    Suzuki, F.3
  • 19
    • 0042947093 scopus 로고
    • The structure and time evolution of a cellulose sheet in the nascent fibril produced by Acetobacter xylinum
    • Kai A, Koseki T (1985) The structure and time evolution of a cellulose sheet in the nascent fibril produced by Acetobacter xylinum. Makromol Chem 186: 2609-2614.
    • (1985) Makromol Chem , vol.186 , pp. 2609-2614
    • Kai, A.1    Koseki, T.2
  • 20
    • 0036771632 scopus 로고    scopus 로고
    • Carbohydrate solution simulations: producing a force field with experimentally consistent primary alcohol rotational frequencies and populations
    • Kuttel M, Brady JW, Naidoo KJ (2002) Carbohydrate solution simulations: producing a force field with experimentally consistent primary alcohol rotational frequencies and populations. J Comput Chem 23: 1236-1243.
    • (2002) J Comput Chem , vol.23 , pp. 1236-1243
    • Kuttel, M.1    Brady, J.W.2    Naidoo, K.J.3
  • 22
    • 65749111512 scopus 로고    scopus 로고
    • Structural reorganization of molecular sheets derived from cellulose II by molecular dynamics simulations
    • Miyamoto H, Umemura M, Aoyagi T, Yamane C, Ueda K, Takahashi K (2009) Structural reorganization of molecular sheets derived from cellulose II by molecular dynamics simulations. Carbohydr Res 344: 1085-1094.
    • (2009) Carbohydr Res , vol.344 , pp. 1085-1094
    • Miyamoto, H.1    Umemura, M.2    Aoyagi, T.3    Yamane, C.4    Ueda, K.5    Takahashi, K.6
  • 23
    • 79551621216 scopus 로고    scopus 로고
    • Structural rearrangement of chitin molecular sheets in water -Mechanism of structural formation of regenerated chitin proposed by molecular dynamics simulation
    • Miyamoto H, Yamane C, Hirase K, Ueda K (2010) Structural rearrangement of chitin molecular sheets in water -Mechanism of structural formation of regenerated chitin proposed by molecular dynamics simulation. J Soc Fiber Sci Technol 66: 299-303.
    • (2010) J Soc Fiber Sci Technol , vol.66 , pp. 299-303
    • Miyamoto, H.1    Yamane, C.2    Hirase, K.3    Ueda, K.4
  • 24
    • 79953325675 scopus 로고    scopus 로고
    • Supermolecular structure of cellulose/amylose blends prepared from aqueous NaOH solutions and effects of amylose on structural formation of cellulose from its solution
    • Miyamoto H, Ago M, Yamane C, Seguchi M, Ueda K, Okajima K (2011) Supermolecular structure of cellulose/amylose blends prepared from aqueous NaOH solutions and effects of amylose on structural formation of cellulose from its solution. Carbohydr Res 346: 807-814.
    • (2011) Carbohydr Res , vol.346 , pp. 807-814
    • Miyamoto, H.1    Ago, M.2    Yamane, C.3    Seguchi, M.4    Ueda, K.5    Okajima, K.6
  • 25
    • 0342892105 scopus 로고
    • 1H-NMR sudies of (6R)- and (6S)-Deuterated D-Hexoses: assignment of the preferred rotamers about C5-C6 Bond of d-Glucose and D-Galactose Derivatives in Solutions
    • 1H-NMR sudies of (6R)- and (6S)-Deuterated D-Hexoses: assignment of the preferred rotamers about C5-C6 bond of d-Glucose and D-Galactose derivatives in solutions. Tetrahedron Lett 25: 1575-1578.
    • (1984) Tetrahedron Lett , vol.25 , pp. 1575-1578
    • Nishida, Y.1    Ohrui, H.2    Meguro, H.3
  • 26
    • 0037036704 scopus 로고    scopus 로고
    • β from synchrotron x-ray and neutron fiber diffraction
    • β from synchrotron x-ray and neutron fiber diffraction. J Am Chem Soc 124: 9074-9082.
    • (2002) J Am Chem Soc , vol.124 , pp. 9074-9082
    • Nishiyama, Y.1    Langan, P.2    Chanzy, H.3
  • 27
    • 33846204420 scopus 로고
    • Packing analysis of carbohydrates and polysaccharides. III. Valonia cellulose and cellulose II
    • Sarko A, Muggli R (1974) Packing analysis of carbohydrates and polysaccharides. III. Valonia cellulose and cellulose II. Macromolecules 7: 486-494.
    • (1974) Macromolecules , vol.7 , pp. 486-494
    • Sarko, A.1    Muggli, R.2
  • 28
    • 0027959269 scopus 로고
    • Characterization of genes in the cellulose-synthesizing operon (acs operon) of Acetobacter xylinum: implications for cellulose crystallization
    • Saxena IM, Kudlicka K, Okuda K, Brown RM Jr (1994) Characterization of genes in the cellulose-synthesizing operon (acs operon) of Acetobacter xylinum: implications for cellulose crystallization. J Bacteriol 176: 5735-5752.
    • (1994) J Bacteriol , vol.176 , pp. 5735-5752
    • Saxena, I.M.1    Kudlicka, K.2    Okuda, K.3    Brown Jr., R.M.4
  • 29
    • 79960085673 scopus 로고    scopus 로고
    • Rapidly calculated DFT relaxed iso-potential φ/ψ maps: β-cellobiose
    • Schnupf U, Momany FA (2011) Rapidly calculated DFT relaxed iso-potential φ/ψ maps: β-cellobiose. Cellulose 18: 887-959.
    • (2011) Cellulose , vol.18 , pp. 887-959
    • Schnupf, U.1    Momany, F.A.2
  • 30
    • 0001189010 scopus 로고    scopus 로고
    • COMPASS: an Ab Initio forcefield optimized for condensed-phase application-overview with details on alkane and benzene compounds
    • Sun H (1998) COMPASS: an Ab Initio forcefield optimized for condensed-phase application-overview with details on alkane and benzene compounds. J Phys Chem B 102: 7338-7364.
    • (1998) J Phys Chem B , vol.102 , pp. 7338-7364
    • Sun, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.