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Volumn 52, Issue 18, 2013, Pages 3157-3170

A single-molecule view of the assembly pathway, subunit stoichiometry, and unwinding activity of the bacteriophage T4 primosome (helicase-primase) complex

Author keywords

[No Author keywords available]

Indexed keywords

DNA REPLICATION FORKS; HELICASE ACTIVITIES; HELICASE SUBSTRATES; HEXAMERIC HELICASES; REAL TIME VISUALIZATION; SINGLE MOLECULE EXPERIMENTS; SINGLE-MOLECULE FLUORESCENCES; UNWINDING ACTIVITY;

EID: 84877357252     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi400231s     Document Type: Article
Times cited : (27)

References (28)
  • 1
    • 0003756549 scopus 로고
    • Molecular Biology of Bacteriophage T4
    • Nossal, N. (1994) Molecular Biology of Bacteriophage T4 Am. Soc. Microbiol. 43-53
    • (1994) Am. Soc. Microbiol. , pp. 43-53
    • Nossal, N.1
  • 2
    • 0023657102 scopus 로고
    • Prokaryotic DNA replication mechanisms
    • Alberts, B. (1987) Prokaryotic DNA replication mechanisms Philos. Trans. R. Soc., B 317, 395-420
    • (1987) Philos. Trans. R. Soc., B , vol.317 , pp. 395-420
    • Alberts, B.1
  • 3
    • 0024604814 scopus 로고
    • Characterization of the bacteriophage T4 gene 41 DNA helicase
    • Richardson, R. W. and Nossal, N. (1989) Characterization of the bacteriophage T4 gene 41 DNA helicase J. Biol. Chem. 264, 4725-4731
    • (1989) J. Biol. Chem. , vol.264 , pp. 4725-4731
    • Richardson, R.W.1    Nossal, N.2
  • 4
    • 0029741204 scopus 로고    scopus 로고
    • The ATP-activated hexameric helicase of bacteriophage T4 (gp41) forms a stable primosome with a single subunit of T4-coded primase (gp61)
    • Dong, F. and von Hippel, P. H. (1996) The ATP-activated hexameric helicase of bacteriophage T4 (gp41) forms a stable primosome with a single subunit of T4-coded primase (gp61) J. Biol. Chem. 271, 19625-19631
    • (1996) J. Biol. Chem. , vol.271 , pp. 19625-19631
    • Dong, F.1    Von Hippel, P.H.2
  • 5
    • 0022398670 scopus 로고
    • Bacteriophage T4 DNA replication protein 41. Cloning of the gene and purification of the expressed protein
    • Hinton, D., Silver, L., and Nossal, N. (1985) Bacteriophage T4 DNA replication protein 41. Cloning of the gene and purification of the expressed protein J. Biol. Chem. 260, 12851-12857
    • (1985) J. Biol. Chem. , vol.260 , pp. 12851-12857
    • Hinton, D.1    Silver, L.2    Nossal, N.3
  • 6
    • 0028905501 scopus 로고
    • The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate
    • Dong, F., Gogol, E. P., and von Hippel, P. H. (1995) The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate J. Biol. Chem. 270, 7462-7473
    • (1995) J. Biol. Chem. , vol.270 , pp. 7462-7473
    • Dong, F.1    Gogol, E.P.2    Von Hippel, P.H.3
  • 7
    • 0033578723 scopus 로고    scopus 로고
    • Interactions of bacteriophage T4-coded primase (gp61) with the T4 replication helicase (gp41) and DNA in primosome formation
    • Jing, D. H., Dong, F., Latham, G. J., and von Hippel, P. H. (1999) Interactions of bacteriophage T4-coded primase (gp61) with the T4 replication helicase (gp41) and DNA in primosome formation J. Biol. Chem. 274, 27287-27298
    • (1999) J. Biol. Chem. , vol.274 , pp. 27287-27298
    • Jing, D.H.1    Dong, F.2    Latham, G.J.3    Von Hippel, P.H.4
  • 8
    • 0024448151 scopus 로고
    • Calculation of protein extinction coefficients from amino acid sequence data
    • Gill, S. C. and von Hippel, P. H. (1989) Calculation of protein extinction coefficients from amino acid sequence data Anal. Biochem. 182, 319-326
    • (1989) Anal. Biochem. , vol.182 , pp. 319-326
    • Gill, S.C.1    Von Hippel, P.H.2
  • 9
    • 0028275036 scopus 로고
    • Kinetic theory of ATP-driven translocases on one-dimensional polymer lattices
    • Young, M. C., Kuhl, S. B., and von Hippel, P. H. (1994) Kinetic theory of ATP-driven translocases on one-dimensional polymer lattices J. Mol. Biol. 235, 1436-1446
    • (1994) J. Mol. Biol. , vol.235 , pp. 1436-1446
    • Young, M.C.1    Kuhl, S.B.2    Von Hippel, P.H.3
  • 10
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • Roy, R., Hohng, S., and Ha, T. (2008) A practical guide to single-molecule FRET Nat. Methods 5, 507-516
    • (2008) Nat. Methods , vol.5 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 11
    • 84856935207 scopus 로고    scopus 로고
    • Single-molecule pull-down for studying protein interactions
    • Jain, A., Liu, R., Xiang, Y. K., and Ha, T. (2012) Single-molecule pull-down for studying protein interactions Nat. Protoc. 7, 445-452
    • (2012) Nat. Protoc. , vol.7 , pp. 445-452
    • Jain, A.1    Liu, R.2    Xiang, Y.K.3    Ha, T.4
  • 12
    • 0037057630 scopus 로고    scopus 로고
    • Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
    • Ha, T., Rasnik, I., Cheng, W., Babcock, H. P., Gauss, G. H., Lohman, T. M., and Chu, S. (2002) Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase Nature 419, 638-641
    • (2002) Nature , vol.419 , pp. 638-641
    • Ha, T.1    Rasnik, I.2    Cheng, W.3    Babcock, H.P.4    Gauss, G.H.5    Lohman, T.M.6    Chu, S.7
  • 13
    • 33750295496 scopus 로고    scopus 로고
    • Nonblinking and long-lasting single-molecule fluorescence imaging
    • Rasnik, I., McKinney, S. A., and Ha, T. (2006) Nonblinking and long-lasting single-molecule fluorescence imaging Nat. Methods 3, 891-893
    • (2006) Nat. Methods , vol.3 , pp. 891-893
    • Rasnik, I.1    McKinney, S.A.2    Ha, T.3
  • 14
    • 23944503359 scopus 로고    scopus 로고
    • Total internal reflection fluorescence microscopy in single molecule nanobioscience
    • Wazawa, T. and Ueda, M. (2005) Total internal reflection fluorescence microscopy in single molecule nanobioscience Adv. Biochem. Eng./Biotechnol. 95, 77-106
    • (2005) Adv. Biochem. Eng./Biotechnol. , vol.95 , pp. 77-106
    • Wazawa, T.1    Ueda, M.2
  • 16
    • 0034760118 scopus 로고    scopus 로고
    • Total internal reflection fluorescence microscopy in cell biology
    • Axelrod, D. (2001) Total internal reflection fluorescence microscopy in cell biology Traffic 2, 764-774
    • (2001) Traffic , vol.2 , pp. 764-774
    • Axelrod, D.1
  • 17
    • 0037571112 scopus 로고    scopus 로고
    • Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
    • Halgren, T. A. (1996) Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94 J. Comput. Chem. 17, 490-519
    • (1996) J. Comput. Chem. , vol.17 , pp. 490-519
    • Halgren, T.A.1
  • 18
    • 84865306279 scopus 로고    scopus 로고
    • Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4
    • Jose, D., Weitzel, S. E., Jing, D., and von Hippel, P. H. (2012) Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4 Proc. Natl. Acad. Sci. U.S.A. 109, 13596-13601
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 13596-13601
    • Jose, D.1    Weitzel, S.E.2    Jing, D.3    Von Hippel, P.H.4
  • 19
    • 84865989446 scopus 로고    scopus 로고
    • Breathing fluctuations in position-specific DNA base pairs are involved in regulating helicase movement into the replication fork
    • Jose, D., Weitzel, S. E., and von Hippel, P. H. (2012) Breathing fluctuations in position-specific DNA base pairs are involved in regulating helicase movement into the replication fork Proc. Natl. Acad. Sci. U.S.A. 109, 14428-14433
    • (2012) Proc. Natl. Acad. Sci. U.S.A. , vol.109 , pp. 14428-14433
    • Jose, D.1    Weitzel, S.E.2    Von Hippel, P.H.3
  • 20
    • 34547595373 scopus 로고    scopus 로고
    • Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase
    • Myong, S., Bruno, M. M., Pyle, A. M., and Ha, T. (2007) Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase Science 317, 513-516
    • (2007) Science , vol.317 , pp. 513-516
    • Myong, S.1    Bruno, M.M.2    Pyle, A.M.3    Ha, T.4
  • 21
    • 60549117657 scopus 로고    scopus 로고
    • BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation
    • Yodh, J. G., Stevens, B. C., Kanagaraj, R., Janscak, P., and Ha, T. (2009) BLM helicase measures DNA unwound before switching strands and hRPA promotes unwinding reinitiation EMBO J. 28, 405-416
    • (2009) EMBO J. , vol.28 , pp. 405-416
    • Yodh, J.G.1    Stevens, B.C.2    Kanagaraj, R.3    Janscak, P.4    Ha, T.5
  • 22
    • 27644514163 scopus 로고    scopus 로고
    • Repetitive shuttling of a motor protein on DNA
    • Myong, S., Rasnik, I., Joo, C., Lohman, T. M., and Ha, T. (2005) Repetitive shuttling of a motor protein on DNA Nature 437, 1321-1325
    • (2005) Nature , vol.437 , pp. 1321-1325
    • Myong, S.1    Rasnik, I.2    Joo, C.3    Lohman, T.M.4    Ha, T.5
  • 23
    • 0020364657 scopus 로고
    • Bacteriophage T4 gene 41 protein, required for the synthesis of RNA primers, is also a DNA helicase
    • Venkatesan, M., Silver, L., and Nossal, N. (1982) Bacteriophage T4 gene 41 protein, required for the synthesis of RNA primers, is also a DNA helicase J. Biol. Chem. 257, 12426-12434
    • (1982) J. Biol. Chem. , vol.257 , pp. 12426-12434
    • Venkatesan, M.1    Silver, L.2    Nossal, N.3
  • 24
    • 21844446871 scopus 로고    scopus 로고
    • The oligomeric T4 primase is the functional form during replication
    • Yang, J., Xi, J., Zhuang, Z., and Benkovic, S. J. (2005) The oligomeric T4 primase is the functional form during replication J. Biol. Chem. 280, 25416-25423
    • (2005) J. Biol. Chem. , vol.280 , pp. 25416-25423
    • Yang, J.1    Xi, J.2    Zhuang, Z.3    Benkovic, S.J.4
  • 25
    • 0035909835 scopus 로고    scopus 로고
    • A zinc ribbon protein in DNA replication: Primer synthesis and macromolecular interactions by the bacteriophage T4 primase
    • Valentine, A. M., Faoud, T., Shier, V. K., and Benkovic, S. J. (2001) A zinc ribbon protein in DNA replication: Primer synthesis and macromolecular interactions by the bacteriophage T4 primase Biochemistry 40, 15074-15085
    • (2001) Biochemistry , vol.40 , pp. 15074-15085
    • Valentine, A.M.1    Faoud, T.2    Shier, V.K.3    Benkovic, S.J.4
  • 27
    • 0019430447 scopus 로고
    • Characterization of the DNA-dependent GTPase activity of T4 gene 41 protein, an essential component of the T4 bacteriophage DNA replication apparatus
    • Liu, C. and Alberts, B. (1981) Characterization of the DNA-dependent GTPase activity of T4 gene 41 protein, an essential component of the T4 bacteriophage DNA replication apparatus J. Biol. Chem. 256, 2813-2820
    • (1981) J. Biol. Chem. , vol.256 , pp. 2813-2820
    • Liu, C.1    Alberts, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.