Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale

New Phytologist

Volumn 198, Issue 4, 2013, Pages 1239-1249

  Põlme, Sergei ^a,b   Bahram, Mohammad ^a   Yamanaka, Takashi ^c   Nara, Kazuhide ^d   Dai, Yu Cheng ^e   Grebenc, Tine ^f   Kraigher, Hojka ^f   Toivonen, Mika ^g   Wang, Pi Han ^h   Matsuda, Yosuke ⁱ   Naadel, Triin ^a   Kennedy, Peter G ^j   Kõljalg, Urmas ^a,b   Tedersoo, Leho ^a,b  

^a UNIVERSITY OF TARTU   (Estonia)

^b University of Tartu Natural History Museum   (Estonia)

^c FORESTRY AND FOREST PRODUCTS RESEARCH INSTITUTE   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e INSTITUTE OF APPLIED ECOLOGY   (China)

^f SLOVENIAN FORESTRY INSTITUTE   (Slovenia)

^g UNIVERSITY OF HELSINKI   (Finland)

^h TUNGHAI UNIVERSITY   (Taiwan)

ⁱ MIE UNIVERSITY   (Japan)

^j LEWIS AND CLARK COLLEGE   (United States)

more..

Author keywords

Alder (Alnus); Ectomycorrhizal (ECM) fungi; Host specificity; Latitudinal gradient of diversity; Soil calcium concentration; Species richness

Indexed keywords

CALCIUM; RAIN;

BIOGEOGRAPHICAL REGION; BIOGEOGRAPHY; CALCIUM; COMMUNITY COMPOSITION; DNA; ECTOMYCORRHIZA; FUNGUS; HOST SPECIFICITY; LAST GLACIAL MAXIMUM; LATITUDINAL GRADIENT; MIGRATION; PHYLOGENETICS; POPULATION DISTRIBUTION; SAMPLING; SPATIAL ANALYSIS; SPECIES RICHNESS; TAXONOMY;

ALDER; ARTICLE; BIODIVERSITY; CHEMISTRY; CLIMATE; GEOGRAPHY; METABOLISM; MICROBIOLOGY; MYCORRHIZA; PHYLOGENY; PHYLOGEOGRAPHY; PHYSIOLOGY; SOIL; STATISTICAL MODEL;

ALNUS; BIODIVERSITY; CALCIUM; CLIMATE; GEOGRAPHY; LIKELIHOOD FUNCTIONS; MYCORRHIZAE; PHYLOGENY; PHYLOGEOGRAPHY; RAIN; SOIL;

EUROPE; NORTH AMERICA;

ALNUS; FUNGI;

EID: 84877349177     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12170     Document Type: Article

References (70)

1. Abarenkov K, Nilsson RH, Larsson K-H, Alexander IJ, Eberhardt U, Erland S, Høiland K, Kjøller R, Larsson E, Pennanen T et al. 2010. The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist 186: 281-285.
2. Akhani H, Djamali M, Ghorbanalizadeh A, Ramezani E. 2010. Plant biodiversity of Hyrcanian relict forests, N Iran: an overview of the flora, vegetation, palaeoecology and conservation. Pakistan Journal of Botany 42: 231-258.
3. Aponte C, García L, Maraņķn T, Gardes M. 2010. Indirect host effect on ectomycorrhizal fungi: leaf fall and litter quality explain changes in fungal communities on the roots of co-occurring Mediterranean oaks. Soil Biology and Biochemistry 42: 788-796.
4. Bahram M, Põlme S, Kõljalg U, Zarre S, Tedersoo L. 2012. Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran. New Phytologist 193: 465-473.
5. Becerra A, Zak MR, Horton TR, Micolini J. 2005. Ectomycorrhizal and arbuscular mycorrhizal colonization of Alnus acuminata from Calilegua National Park (Argentina). Mycorrhiza 15: 525-531.
6. Beier CM, Woods AM, Hotopp KP, Gibbs JP, Mitchell MJ, Dovčiak M, Leopold DJ, Lawrence GB, Page BD. 2012. Changes in faunal and vegetation communities along a soil calcium gradient in northern hardwood forests. Canadian Journal of Forest Research 42: 1141-1152.
7. Benson DR, Dawson JO. 2007. Recent advances in the biogeography and genecology of symbiotic Frankia and its host plants. Physiologia Plantarum 130: 318-330.
8. Borcard D, Legendre P. 2002. All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecological Modelling 153: 51-68.
9. Bryant JA, Lamanna C, Morlon H, Kerkhoff AJ, Enquist BJ, Green JL. 2008. Microbes on mountainsides: contrasting elevational patterns of bacterial and plant diversity. Proceedings of the National Academy of Sciences, USA 105: 11505-11511.
10. Chatarpaul L, Chakravarty P, Subramaniam P. 1989. Studies in tetrapartite symbioses. Plant and Soil 118: 145-150.
11. Chen Z, Li J. 2004. Phylogenetics and biogeography of Alnus (Betulaceae) inferred from sequences of nuclear ribosomal DNA ITS region. International Journal of Plant Sciences 165: 325-335.
12. Colwell R. 2006. EstimateS: statistical estimation of species richness and shared species from samples, version 8.2.0. [WWW document] URL http://Purl.Oclc.org/estimates [accessed on 20 July 2009].
13. Den Bakker HC, Zuccarello G, Kuyper T, Noordeloos M. 2004. Evolution and host specificity in the ectomycorrhizal genus Leccinum. New Phytologist 163: 201-215.
14. Dickie IA, Bolstridge N, Cooper JA, Peltzer DA. 2010. Co-invasion by Pinus and its mycorrhizal fungi. New Phytologist 187: 475-484.
15. Donoghue MJ, Smith SA. 2004. Patterns in the assembly of temperate forests around the Northern Hemisphere. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 359: 1633-1644.
16. Dray S, Legendre P, Blanchet G. 2007. Packfor: forward selection with permutation. R package version 0.0-7. [WWW document] URL http://r-forge.r-project.org/R/?group_id=195 [accessed 20 July 2012].
17. Fierer N. 2008. Microbial biogeography: patterns in microbial diversity across space and time. In: Zengler K, ed. Accessing uncultivated microorganisms: from the environment to organisms and genomes and back. Washington, DC, USA: ASM Press, 95-115.
18. Fierer N, McCain CM, Meir P, Zimmermann M, Rapp JM, Silman MR, Knight R. 2011. Microbes do not follow the elevational diversity patterns of plants and animals. Ecology 92: 797-804.
19. Furlow JJ. 1979. The systematics of the American species of Alnus (Betulaceae). Rhodora 81: 1-248.
20. Geml J, Timling I, Robinson CH, Lennon N, Nusbaum HC, Brochmann C, Noordeloos ME, Taylor DL. 2011. An arctic community of symbiotic fungi assembled by long-distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA. Journal of Biogeography 39: 74-88.
21. Goslee SC, Urban DL. 2007. The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software 22: 1-19.
22. Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27: 221-224.
23. Hewitt GM. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society 68: 87-112.
24. Hijmans RJ, Cameron SE, Parra JL, Jones PG, Jarvis A. 2005. Very high resolution interpolated climate surfaces for global land areas. International Journal of Climatology 25: 1965-1978.
25. Hillebrand H. 2004. On the generality of the latitudinal diversity gradient. American Naturalist 163: 192-211.
26. Ishida TA, Nara K, Hogetsu T. 2007. Host effects on ectomycorrhizal fungal communities: insight from eight host species in mixed conifer-broadleaf forests. New Phytologist 174: 430-440.
27. Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics 9: 286-298.
28. Kennedy PG, Garibay-Orijel R, Higgins LM, Angeles-Arguiz R. 2011. Ectomycorrhizal fungi in Mexican Alnus forests support the host co-migration hypothesis and continental-scale patterns in phylogeography. Mycorrhiza 21: 1-10.
29. Kennedy PG, Hill LT. 2010. A molecular and phylogenetic analysis of the structure and specificity of Alnus rubra ectomycorrhizal assemblages. Fungal Ecology 3: 195-204.
30. King RA, Ferris C. 1998. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology 7: 1151-1161.
31. Lilleskov EA, Bruns TD, Horton TR, Taylor D, Grogan P. 2004. Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities. FEMS Microbiology Ecology 49: 319-332.
32. Maddison WP, Maddison DR. 2008. Mesquite: a modular system for evolutionary analysis. Evolution 62: 1103-1118.
33. Matheny PB, Aime MC, Bougher NL, Buyck B, Desjardin DE, Horak E, Kropp BR, Lodge DJ, Soytong K, Trappe JM. 2009. Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. Journal of Biogeography 36: 577-592.
34. McCune B, Mefford MJ. 2006. PC-Ord for Windows v. 5.15. Multivariate analysis of ecological data. Gleneden Beach, OR, USA: MjM Software.
35. McLaughlin S, Wimmer R. 1999. Calcium physiology and terrestrial ecosystem processes. New Phytologist 142: 373-417.
36. Molina R, Massicotte H, Trappe JM. 1992. Specificity phenomena in mycorrhizal symbioses: community-ecological consequences and practical implications. In: Allen M, ed. Mycorrhizal functioning: an integrative plant-fungal process. New York, USA: Chapman and Hall, 357-423.
37. Moreau PA, Peintner U, Gardes M. 2006. Phylogeny of the ectomycorrhizal mushroom genus Alnicola (Basidiomycota, Cortinariaceae) based on rDNA sequences with special emphasis on host specificity and morphological characters. Molecular Phylogenetics and Evolution 38: 794-807.
38. Morris MH, Perez-Perez MA, Smith ME, Bledsoe CS. 2009. Influence of host species on ectomycorrhizal communities associated with two co-occurring oaks (Quercus spp.) in a tropical cloud forest. FEMS Microbiology Ecology 69: 274-287.
39. Moyersoen B, Beever RE, Martin F. 2003. Genetic diversity of Pisolithus in New Zealand indicates multiple long-distance dispersal from Australia. New Phytologist 160: 569-579.
40. Murat C, Díez J, Luis P, Delaruelle C, Dupré C, Chevalier G, Bonfante P, Martin F. 2004. Polymorphism at the ribosomal DNA ITS and its relation to postglacial re-colonization routes of the Perigord truffle Tuber melanosporum. New Phytologist 164: 401-411.
41. Navarro E, Bousquet J, Moiroud A, Munive A, Piou D, Norm P. 2003. Molecular phylogeny of Alnus (Betulaceae), inferred from nuclear ribosomal DNA ITS sequences. Plant and Soil 254: 207-217.
42. Oksanen J, Kindt R, Legendre P, O'Hara B, Stevens MHH, Oksanen MJ. 2012. vegan: Community Ecology Package. [WWW document] URL http://vegan.r-forge.r-project.org/ [accessed on 20 October 2012].
43. Paradis E, Claude J, Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20: 289-290.
44. Pärtel M. 2002. Local plant diversity patterns and evolutionary history at the regional scale. Ecology 83: 2361-2366.
45. Pinheiro J, Bates D, DebRoy S, Sarkar D, the R Development Core Team. 2008. NLME: linear and nonlinear mixed effects models. [WWW document] URL http://cran.r-project.org/web/packages/nlme/index.html [accessed 12 December 2008].
46. Pritsch K, Becerra A, Polme S, Tedersoo L, Schloter M, Agerer R. 2010. Description and identification of Alnus acuminata ectomycorrhizae from Argentinean alder stands. Mycologia 102: 1263-1273.
47. Pritsch K, Boyle H, Munch J, Buscot F. 1997. Characterization and identification of black alder ectomycorrhizas by PCR/RFLP analyses of the rDNA internal transcribed spacer (ITS). New Phytologist 137: 357-369.
48. Queloz V, Sieber TN, Holdenrieder O, McDonald BA, Grünig CR. 2011. No biogeographical pattern for a root-associated fungal species complex. Global Ecology and Biogeography 20: 160-169.
49. Reich PB, Oleksyn J, Modrzynski J, Mrozinski P, Hobbie SE, Eissenstat DM, Chorover J, Chadwick OA, Hale CM, Tjoelker MG. 2005. Linking litter calcium, earthworms and soil properties: a common garden test with 14 tree species. Ecology Letters 8: 811-818.
50. Ren BA, Xiang X, Chen Z. 2010. Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Molecular Ecology Resources 10: 594-605.
51. Ricklefs RE. 2004. A comprehensive framework for global patterns in biodiversity. Ecology Letters 7: 1-15.
52. Rineau F, Garbaye J. 2009. Effects of liming on ectomycorrhizal community structure in relation to soil horizons and tree hosts. Fungal Ecology 2: 103-109.
53. Rochet J, Moreau PA, Manzi S, Gardes M. 2011. Comparative phylogenies and host specialization in the alder ectomycorrhizal fungi Alnicola, Alpova and Lactarius (Basidiomycota) in Europe. BMC Evolutionary Biology 11: 40-50.
54. Sanderson MJ. 2002. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution 19: 101-109.
55. Sanmartin I, Enghoff H, Ronquist F. 2001. Patterns of animal dispersal, vicariance and diversification in the Holarctic. Biological Journal of the Linnean Society 73: 345-390.
56. Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA 109: 6241-6246.
57. Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Systematic Biology 57: 758-771.
58. Suvi T, Tedersoo L, Abarenkov K, Beaver K, Gerlach J, Koljalg U. 2010. Mycorrhizal symbionts of Pisonia grandis and P. sechellarum in Seychelles: identification of mycorrhizal fungi and description of new Tomentella species. Mycologia 102: 522-533.
59. Suzuki R, Shimodaira H. 2006. Pvclust: an R package for assessing the uncertainty in hierarchical clustering. Bioinformatics 22: 1540-1542.
60. Swaty RL, Deckert RJ, Whitham TG, Gehring CA. 2004. Ectomycorrhizal abundance and community composition shifts with drought: predictions from tree rings. Ecology 85: 1072-1084.
61. Tedersoo L, Bahram M, Jairus T, Bechiem E, Chinoya S, Mpumba R, Leal M, Randriaanjohany E, Razafimandimbison S, Sadam A. 2011. Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar. Molecular Ecology 20: 3071-3080.
62. Tedersoo L, Diedhiou A, Henkel TW, Kjoller R, Morris MH, Nara K, Nouhra E, Peay KG, Põlme S, Ryberg M et al. 2012. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Molecular Ecology 21: 4160-4170.
63. Tedersoo L, Jairus T, Horton BM, Abarenkov K, Suvi T, Saar I, Kõljalg U. 2008. Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers. New Phytologist 180: 479-490.
64. Tedersoo L, May TW, Smith ME. 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages. Mycorrhiza 20: 217-263.
65. Tedersoo L, Nara K. 2010. General latitudinal gradient of biodiversity is reversed in ectomycorrhizal fungi. New Phytologist 185: 351-354.
66. Tedersoo L, Suvi T, Jairus T, Ostonen I, Põlme S. 2009. Revisiting ectomycorrhizal fungi of the genus Alnus: differential host specificity, diversity and determinants of the fungal community. New Phytologist 182: 727-735.
67. Tiffney BH, Manchester SR. 2001. The use of geological and paleontological evidence in evaluating plant phylogeographic hypotheses in the Northern Hemisphere Tertiary. International Journal of Plant Science 162: S3-S17.
68. Vavrek MJ. 2011. fossil: palaeoecological and palaeogeographical analysis tools. Palaeontologia Electronica 14: 1T.
69. Wu QX, Mueller GM, Lutzoni FM, Huang YQ, Guo SY. 2000. Phylogenetic and biogeographic relationships of eastern Asian and eastern North American disjunct Suillus species (Fungi) as inferred from nuclear ribosomal RNA ITS sequences. Molecular Phylogenetics and Evolution 17: 37-47.
70. Yamanaka T, Li CY, Bormann BT, Okabe H. 2003. Tripartite associations in an alder: effects of Frankia and Alpova diplophloeus on the growth, nitrogen fixation and mineral acquisition of Alnus tenuifolia. Plant and Soil 254: 179-186.