Multicanonical simulation of biomolecules and microcanonical statistical analysis of conformational transitions

Physica Scripta

Volumn 87, Issue 5, 2013, Pages

  Bachmann, Michael ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONAL TRANSITIONS; COOPERATIVE PROCESS; COOPERATIVE TRANSITIONS; GENERALIZED-ENSEMBLE SIMULATION; MULTICANONICAL SAMPLING; MULTICANONICAL SIMULATIONS; STRUCTURAL TRANSITIONS; UNIQUE IDENTIFICATIONS;

BEHAVIORAL RESEARCH; DIGITAL STORAGE; STATISTICAL METHODS;

COMPUTER SIMULATION;

EID: 84877320154     PISSN: 00318949     EISSN: 14024896     Source Type: Journal    
DOI: 10.1088/0031-8949/87/05/058504     Document Type: Article

References (37)

1. Schluttig J, Bachmann M and Janke W 2008 J. Comput. Chem. 29 2603
2. Marinari E and Parisi G 1992 Europhys. Lett. 19 451
3. Lyubartsev A P, Martsinovski A A, Shevkunov S V and Vorontsov-Velyaminov P N 1992 J. Chem. Phys. 96 1776
4. Swendsen R H and Wang J S 1986 Phys. Rev. Lett. 57 2607
5. Hukushima K and Nemoto K 1996 J. Phys. Soc. Japan 65 1604
6. Hukushima K, Takayama H and Nemoto K 1996 Int. J. Mod. Phys. C 7 337
7. Geyer C J 1991 Computing Science and Statistics Proc. 23rd Symp. on the Interface ed E M Keramidas (Fairfax Station: Interface Foundation) p 156
8. Berg B A and Neuhaus T 1991 Phys. Lett. B 267 249
9. Berg B A and Neuhaus T 1992 Phys. Rev. Lett. 68 9
10. Janke W 1998 Physica A 254 164
11. Berg B A 2000 Fields Inst. Commun. 26 1
12. Berg B A 2004 Markov Chain Monte Carlo Simulations (Singapore: World Scientific)
13. Bachmann M and Janke W 2003 Phys. Rev. Lett. 91 208105
14. Wang F and Landau D P 2001 Phys. Rev. Lett. 86 2050 (Pubitemid 32254758)
15. Wang F and Landau D P 2001 Phys. Rev. E 64 056101
16. Gross J, Janke W and Bachmann M 2011 Comput. Phys. Commun. 182 1638
17. Ferrenberg A M and Swendsen R H 1989 Phys. Rev. Lett. 63 1195
18. Kumar S, Bouzida D, Swendsen R H, Kollman P A and Rosenberg J M 1992 J. Comput. Chem. 13 1011
19. Junghans C, Bachmann M and Janke W 2006 Phys. Rev. Lett. 97 218103 (Pubitemid 44791116)
20. Junghans C, Bachmann M and Janke W 2009 Europhys. Lett. 87 40002
21. Junghans C, Janke W and Bachmann M 2011 Comput. Phys. Commun. 182 1937
22. Möddel M, Janke W and Bachmann M 2010 Phys. Chem. Chem. Phys. 12 11548
23. Bereau T, Bachmann M and Deserno M 2010 J. Am. Chem. Soc. 132 13129
24. Bereau T, Deserno M and Bachmann M 2011 Biophys. J. 100 2764
25. Schnabel S, Seaton D T, Landau D P and Bachmann M 2011 Phys. Rev. E 84 011127
26. Behringer H and Pleimling M 2006 Phys. Rev. E 74 011108 (Pubitemid 44091282)
27. Bird R B, Curtiss C F, Armstrong R C and Hassager O 1987 Dynamics of Polymeric Liquids 2nd edn (New York: Wiley)
28. Kremer K and Grest G S 1989 J. Chem. Phys. 92 5057
29. Milchev A, Bhattacharaya A and Binder K 2001 Macromolecules 34 1881 (Pubitemid 34216565)
30. Shakhnovich E 2006 Chem. Rev. 106 1559 (Pubitemid 43792772)
31. Rampf F, Paul W and Binder K 2005 Europhys. Lett. 70 628 (Pubitemid 40758646)
32. Paul W, Strauch T, Rampf F and Binder K 2007 Phys. Rev. E 75 060801 (Pubitemid 47140360)
33. Taylor M P, Paul W and Binder K 2009 J. Chem. Phys. 131 114907
34. Taylor M P, Paul W and Binder K 2009 Phys. Rev. E 79 050801
35. Gross J, Neuhaus T, Vogel T and Bachmann M 2013 J. Chem. Phys. 138 074905
36. Schnabel S, Vogel T, Bachmann M and Janke W 2009 Chem. Phys. Lett. 476 201
37. Schnabel S, Bachmann M and Janke W 2009 J. Chem. Phys. 131 124904