-
1
-
-
0036711572
-
Sacred lotus, the long-living fruits of China Antique
-
Shen-Miller J: Sacred lotus, the long-living fruits of China Antique. Seed Sci Res 2002, 12:131-143.
-
(2002)
Seed Sci Res
, vol.12
, pp. 131-143
-
-
Shen-Miller, J.1
-
2
-
-
0036189802
-
Long-living lotus: germination and soil g-irradiation of centuries-old fruits, and cultivation, growth, and phenotypic abnormalities of offspring
-
Shen-Miller J, Schopf JW, Harbottle G, Cao RJ, Ouyang S, Zhou KS, Southon JR, Liu GH: Long-living lotus: germination and soil g-irradiation of centuries-old fruits, and cultivation, growth, and phenotypic abnormalities of offspring. Am J Bot 2002, 89:236-247.
-
(2002)
Am J Bot
, vol.89
, pp. 236-247
-
-
Shen-Miller, J.1
Schopf, J.W.2
Harbottle, G.3
Cao, R.J.4
Ouyang, S.5
Zhou, K.S.6
Southon, J.R.7
Liu, G.H.8
-
4
-
-
33845276502
-
Nuclear DNA C-values in 12 species in Nymphaeales
-
Diao Y, Chen L, Yang G, Zhou M, Song Y, Hu Z, Lin JY: Nuclear DNA C-values in 12 species in Nymphaeales. Caryologia 2006, 59:25-30.
-
(2006)
Caryologia
, vol.59
, pp. 25-30
-
-
Diao, Y.1
Chen, L.2
Yang, G.3
Zhou, M.4
Song, Y.5
Hu, Z.6
Lin, J.Y.7
-
5
-
-
84869220332
-
Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar
-
Yang M, Han Y, VanBuren R, Ming R, Xu L, Han Y, Liu Y: Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar. BMC Genomics 2012, 13:653.
-
(2012)
BMC Genomics
, vol.13
, pp. 653
-
-
Yang, M.1
Han, Y.2
VanBuren, R.3
Ming, R.4
Xu, L.5
Han, Y.6
Liu, Y.7
-
6
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, et al: The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 2008, 452:991-996.
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.10
Salzberg, S.L.11
Feng, L.12
Jones, M.R.13
Skelton, R.L.14
Murray, J.E.15
Chen, C.16
Qian, W.17
Shen, J.18
Du, P.19
Eustice, M.20
Tong, E.21
Tang, H.22
Lyons, E.23
Paull, R.E.24
Michael, T.P.25
Wall, K.26
Rice, D.W.27
Albert, H.28
Wang, M.L.29
Zhu, Y.J.30
more..
-
7
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, et al: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
Vezzi, A.11
Legeai, F.12
Hugueney, P.13
Dasilva, C.14
Horner, D.15
Mica, E.16
Jublot, D.17
Poulain, J.18
Bruyere, C.19
Billault, A.20
Segurens, B.21
Gouyvenoux, M.22
Ugarte, E.23
Cattonaro, F.24
Anthouard, V.25
Vico, V.26
Del Fabbro, C.27
Alaux, M.28
Di Gaspero, G.29
Dumas, V.30
more..
-
8
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, et al: The Sorghum bicolor genome and the diversification of grasses. Nature 2009, 457:551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
Schmutz, J.11
Spannagl, M.12
Tang, H.13
Wang, X.14
Wicker, T.15
Bharti, A.K.16
Chapman, J.17
Feltus, F.A.18
Gowik, U.19
Grigoriev, I.V.20
Lyons, E.21
Maher, C.A.22
Martis, M.23
Narechania, A.24
Otillar, R.P.25
Penning, B.W.26
Salamov, A.A.27
Wang, Y.28
Zhang, L.29
Carpita, N.C.30
more..
-
9
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, et al: The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
more..
-
10
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, et al: Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
Xu, D.11
Hellsten, U.12
May, G.D.13
Yu, Y.14
Sakurai, T.15
Umezawa, T.16
Bhattacharyya, M.K.17
Sandhu, D.18
Valliyodan, B.19
Lindquist, E.20
Peto, M.21
Grant, D.22
Shu, S.23
Goodstein, D.24
Barry, K.25
Futrell-Griggs, M.26
Abernathy, B.27
Du, J.28
Tian, Z.29
Zhu, L.30
more..
-
11
-
-
4944239027
-
Pack-MULE transposable elements mediate gene evolution in plants
-
Jiang N, Bao Z, Zhang X, Eddy S-R, Wessler S-R: Pack-MULE transposable elements mediate gene evolution in plants. Nature 2007, 431:569-573.
-
(2007)
Nature
, vol.431
, pp. 569-573
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Eddy, S.-R.4
Wessler, S.-R.5
-
12
-
-
34249848751
-
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra G, Bradnam K, Korf I: CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 2007, 23:1061-1067.
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
13
-
-
79955142868
-
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
-
Lechner M, Findeiss S, Steiner L, Marz M, Stadler PF, Prohaska SJ: Proteinortho: Detection of (Co-)orthologs in large-scale analysis. BMC Bioinformatics 2011, 12:124.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 124
-
-
Lechner, M.1
Findeiss, S.2
Steiner, L.3
Marz, M.4
Stadler, P.F.5
Prohaska, S.J.6
-
14
-
-
77952476959
-
Insights from the comparison of plant genome sequences
-
Paterson AH, Freeling M, Tang H, Wang X: Insights from the comparison of plant genome sequences. Annu Rev Plant Biol 2010, 61:349-372.
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 349-372
-
-
Paterson, A.H.1
Freeling, M.2
Tang, H.3
Wang, X.4
-
15
-
-
60249085527
-
Polyploidy and angiosperm diversification
-
Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, dePamphilis CW, Wall PK, Soltis PS: Polyploidy and angiosperm diversification. Am J Bot 2009, 96:336-348.
-
(2009)
Am J Bot
, vol.96
, pp. 336-348
-
-
Soltis, D.E.1
Albert, V.A.2
Leebens-Mack, J.3
Bell, C.D.4
Paterson, A.H.5
Zheng, C.6
Sankoff, D.7
dePamphilis, C.W.8
Wall, P.K.9
Soltis, P.S.10
-
16
-
-
42549120705
-
Synteny and collinearity in plant genomes
-
Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH: Synteny and collinearity in plant genomes. Science 2008, 320:486-488.
-
(2008)
Science
, vol.320
, pp. 486-488
-
-
Tang, H.1
Bowers, J.E.2
Wang, X.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
17
-
-
57149102681
-
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
-
Tang H, Wang X, Bowers JE, Ming R, Alam M, Paterson AH: Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res 2008, 18:1944-1954.
-
(2008)
Genome Res
, vol.18
, pp. 1944-1954
-
-
Tang, H.1
Wang, X.2
Bowers, J.E.3
Ming, R.4
Alam, M.5
Paterson, A.H.6
-
18
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
19
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project: The map-based sequence of the rice genome. Nature 2005, 436:793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
20
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa
-
Tuskan GA, DiFazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, et al: The genome of black cottonwood, Populus trichocarpa (Torr. and Gray). Science 2006, 313:1596-1604.
-
(2006)
(Torr and Gray). Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
DiFazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
Schein, J.11
Sterck, L.12
Aerts, A.13
Bhalerao, R.R.14
Bhalerao, R.P.15
Blaudez, D.16
Boerjan, W.17
Brun, A.18
Brunner, A.19
Busov, V.20
Campbell, M.21
Carlson, J.22
Chalot, M.23
Chapman, J.24
Chen, G.L.25
Cooper, D.26
Coutinho, P.M.27
Couturier, J.28
Covert, S.29
Cronk, Q.30
more..
-
21
-
-
77949494249
-
Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
-
Moore M, Soltis PS, Bell CD, Burleigh JG, Soltis DE: Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots. Proc Natl Acad Sci USA 2010, 107:4623-4628.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 4623-4628
-
-
Moore, M.1
Soltis, P.S.2
Bell, C.D.3
Burleigh, J.G.4
Soltis, D.E.5
-
22
-
-
33751381461
-
TimeTree: a public knowledge-base of divergence times among organisms
-
Hedges SB, Dudley J, Kumar S: TimeTree: a public knowledge-base of divergence times among organisms. Bioinformatics 2006, 22:2971-2972.
-
(2006)
Bioinformatics
, vol.22
, pp. 2971-2972
-
-
Hedges, S.B.1
Dudley, J.2
Kumar, S.3
-
23
-
-
0037314098
-
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson MJ: r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2003, 19:301-302.
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
24
-
-
0000175619
-
Rates of synonymous substitution in plant nuclear genes
-
Wolfe KH, Sharp PM, Li WH: Rates of synonymous substitution in plant nuclear genes. J Mol Evol 1989, 29:208-211.
-
(1989)
J Mol Evol
, vol.29
, pp. 208-211
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.H.3
-
25
-
-
65249143921
-
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
-
Fawcett JA, Maere S, van de Peer Y: Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci USA 2009, 106:5737-5742.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 5737-5742
-
-
Fawcett, J.A.1
Maere, S.2
van de Peer, Y.3
-
26
-
-
84862777561
-
A genome triplication associated with early diversification of the core eudicots
-
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, dePamphilis CW: A genome triplication associated with early diversification of the core eudicots. Genome Biol 2012, 13:R3.
-
(2012)
Genome Biol
, vol.13
, pp. R3
-
-
Jiao, Y.1
Leebens-Mack, J.2
Ayyampalayam, S.3
Bowers, J.E.4
McKain, M.R.5
McNeal, J.6
Rolf, M.7
Ruzicka, D.R.8
Wafula, E.9
Wickett, N.J.10
Wu, X.11
Zhang, Y.12
Wang, J.13
Zhang, Y.14
Carpenter, E.J.15
Deyholos, M.K.16
Kutchan, T.M.17
Chanderbali, A.S.18
Soltis, P.S.19
Stevenson, D.W.20
McCombie, R.21
Pires, J.C.22
Wong, G.K.23
Soltis, D.E.24
dePamphilis, C.W.25
more..
-
27
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and post transcriptionally to promote drought resistance
-
Li W-X, Oono Y, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK: The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and post transcriptionally to promote drought resistance. Plant Cell 2008, 20:2238-2251.
-
(2008)
Plant Cell
, vol.20
, pp. 2238-2251
-
-
Li, W.-X.1
Oono, Y.2
Zhu, J.3
He, X.J.4
Wu, J.M.5
Iida, K.6
Lu, X.Y.7
Cui, X.8
Jin, H.9
Zhu, J.K.10
-
28
-
-
77952222149
-
Origin and diversification of basic-helix-loop-helix proteins in plants
-
Pires N, Dolan L: Origin and diversification of basic-helix-loop-helix proteins in plants. Mol Biol Evol 2010, 27:862-874.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 862-874
-
-
Pires, N.1
Dolan, L.2
-
29
-
-
84869018936
-
Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification
-
Vekemans D, Proost S, Vanneste K, Coenen H, Viaene T, Ruelens P, Maere S, van de Peer Y, Geuten K: Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification. Mol Biol Evol 2012, 29:3793-3806.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 3793-3806
-
-
Vekemans, D.1
Proost, S.2
Vanneste, K.3
Coenen, H.4
Viaene, T.5
Ruelens, P.6
Maere, S.7
van de Peer, Y.8
Geuten, K.9
-
30
-
-
57749096814
-
The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids
-
Lyons E, Pedersen B, Kane J, Freeling M: The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids. Tropical Plant Biol 2008, 1: 181-190.
-
(2008)
Tropical Plant Biol
, vol.1
, pp. 181-190
-
-
Lyons, E.1
Pedersen, B.2
Kane, J.3
Freeling, M.4
-
31
-
-
84859564587
-
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
-
Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC: Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics 2012, 90:1563-1574.
-
(2012)
Genetics
, vol.90
, pp. 1563-1574
-
-
Tang, H.1
Woodhouse, M.R.2
Cheng, F.3
Schnable, J.C.4
Pedersen, B.S.5
Conant, G.6
Wang, X.7
Freeling, M.8
Pires, J.C.9
-
32
-
-
0034529964
-
The origin of interspecific genomic incompatibility via gene duplication
-
Lynch M, Force AG: The origin of interspecific genomic incompatibility via gene duplication. Am Nat 2000, 156:590-605.
-
(2000)
Am Nat
, vol.156
, pp. 590-605
-
-
Lynch, M.1
Force, A.G.2
-
33
-
-
80053386792
-
The genome of the mesopolyploid crop species Brassica rapa
-
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, et al: The genome of the mesopolyploid crop species Brassica rapa. Nat Genet 2011, 43:1035-1039.
-
(2011)
Nat Genet
, vol.43
, pp. 1035-1039
-
-
Wang, X.1
Wang, H.2
Wang, J.3
Sun, R.4
Wu, J.5
Liu, S.6
Bai, Y.7
Mun, J.H.8
Bancroft, I.9
Cheng, F.10
Huang, S.11
Li, X.12
Hua, W.13
Freeling, M.14
Pires, J.C.15
Paterson, A.H.16
Chalhoub, B.17
Wang, B.18
Hayward, A.19
Sharpe, A.G.20
Park, B.S.21
Weisshaar, B.22
Liu, B.23
Li, B.24
Tong, C.25
Song, C.26
Duran, C.27
Peng, C.28
Geng, C.29
Koh, C.30
more..
|