Subtle differences in virus composition affect disinfection kinetics and mechanisms

Applied and Environmental Microbiology

Volumn 79, Issue 11, 2013, Pages 3455-3467

  Sigstam, Thérèse ^a   Gannon, Greg ^b   Cascella, Michele ^b   Pecson, Brian M ^a   Wigginton, Krista Rule ^a,c   Kohn, Tamar ^a  

^a EPFL   (Switzerland)

^b UNIVERSITY OF BERN   (Switzerland)

^c UNIVERSITY OF MICHIGAN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISINFECTION KINETICS; INACTIVATION KINETICS; INACTIVATION MECHANISMS; MATRIX-ASSISTED LASER DESORPTION IONIZATION; METHIONINE RESIDUES; MOLECULAR DYNAMICS SIMULATIONS; PROTEIN COMPOSITION; SOLVENT-ACCESSIBLE SURFACE AREA;

AMINO ACIDS; BACTERIOPHAGES; DAMAGE DETECTION; DISINFECTANTS; DISINFECTION; GENES; KINETICS; MASS SPECTROMETRY; MOLECULAR DYNAMICS; PROTEINS;

MICROORGANISMS;

CHLORINE; CHLORINE DERIVATIVE; CHLORINE DIOXIDE; OXIDE; SINGLET OXYGEN;

DISINFECTION; ENZYME ACTIVITY; GENOME; MOLECULAR ANALYSIS; PROTEIN; SIMULATION; VIRUS;

ARTICLE; COLIPHAGE; COMPARATIVE STUDY; DISINFECTION; DRUG EFFECT; GENETICS; GROWTH, DEVELOPMENT AND AGING; KINETICS; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR DYNAMICS; RADIATION EXPOSURE; ULTRAVIOLET RADIATION; VIRUS GENOME; VIRUS INACTIVATION;

CHLORINE; CHLORINE COMPOUNDS; DISINFECTION; GENOME, VIRAL; KINETICS; LEVIVIRUS; MOLECULAR DYNAMICS SIMULATION; OXIDES; SINGLET OXYGEN; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; ULTRAVIOLET RAYS; VIRUS INACTIVATION;

EID: 84877150366     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00663-13     Document Type: Article

References (42)

1. Rodriguez-Lazaro D, Cook N, Ruggeri FM, Sellwood J, Nasser A, Nascimento MS, D'Agostino M, Santos R, Saiz JC, Rzezutka A, Bosch A, Girones R, Carducci A, Muscillo M, Kovac K, Diez-Valcarce M, Vantarakis A, von Bonsdorff CH, Husman AMD, Hernandez M, van der Poel WHM. 2012. Virus hazards from food, water and other contaminated environments. FEMS Microbiol. Rev. 36:786-814.
2. Lim MY, Kim JM, Ko G. 2010. Disinfection kinetics of murine norovirus using chlorine and chlorine dioxide. Water Res. 44:3243-3251.
3. Engelbrecht RS, Weber MJ, Salter BL, Schmidt CA. 1980. Comparative inactivation of viruses by chlorine. Appl. Environ. Microbiol. 40:249 -256.
4. Simonet J, Gantzer C. 2006. Inactivation of poliovirus 1 and F-specific RNA phages and degradation of their genomes by UV irradiation at 254 nanometers. Appl. Environ. Microbiol. 72:7671-7677.
5. Thurston-Enriquez JA, Haas CN, Jacangelo J, Gerba CP. 2005. Inactivation of enteric adenovirus and feline calicivirus by chlorine dioxide. Appl. Environ. Microbiol. 71:3100 -3105.
6. Kohn T, Nelson KL. 2007. Sunlight-mediated inactivation of MS2 coliphage via exogenous singlet oxygen produced by sensitizers in natural waters. Environ. Sci. Technol. 41:192-197.
7. Park GW, Linden KG, Sobsey MD. 2011. Inactivation of murine norovirus, feline calicivirus and echovirus 12 as surrogates for human norovirus (NoV) and coliphage (F+) MS2 by ultraviolet light (254nm) and the effect of cell association on UV inactivation. Lett. Appl. Microbiol. 52: 162-167.
8. Kahler AM, Cromeans TL, Roberts JM, Hill VR. 2011. Source water quality effects on monochloramine inactivation of adenovirus, coxsackievirus, echovirus, and murine norovirus. Water Res. 45:1745-1751.
9. Li JW, Xin ZT, Wang XW, Zheng JL, Chao FH. 2002. Mechanisms of inactivation of hepatitis A virus by chlorine. Appl. Environ. Microbiol. 68:4951- 4955.
10. Alvarez ME, O'Brien RT. 1982. Mechanisms of inactivation of poliovirus by chlorine dioxide and iodine. Appl. Environ. Microbiol. 44:1064 -1071.
11. Napolitano MJ, Stewart DJ, Margerum DW. 2006. Chlorine dioxide oxidation of guanosine 5=-monophosphate. Chem. Res. Toxicol. 19:1451- 1458.
12. Eischeid AC, Meyer JN, Linden KG. 2009. UV disinfection of adenoviruses: molecular indications of DNA damage efficiency. Appl. Environ. Microbiol. 75:23-28.
13. Kurosaki Y, Abe H, Morioka H, Hirayama J, Ikebuchi K, Kamo N, Nikaido O, Azuma H, Ikeda H. 2003. Pyrimidine dimer formation and oxidative damage in M13 bacteriophage inactivation by ultraviolet C irradiation. Photochem. Photobiol. 78:349 -354.
14. Wigginton KR, Menin L, Montoya JP, Kohn T. 2010. Oxidation of virus proteins during UV254 and singlet oxygen mediated inactivation. Environ. Sci. Technol. 44:5437-5443.
15. Eischeid AC, Linden KG. 2011. Molecular indications of protein damage in adenoviruses afterUVdisinfection. Appl. Environ. Microbiol. 77:1145- 1147.
16. Hotze EM, Badireddy AR, Chellam S, Wiesner MR. 2009. Mechanisms of bacteriophage inactivation via singlet oxygen generation in UV illuminated fullerol suspensions. Environ. Sci. Technol. 43:6639-6645.
17. Pecson BM, Martin LV, Kohn T. 2009. Quantitative PCR for determining the infectivity of bacteriophage MS2 upon inactivation by heat, UV-B radiation, and singlet oxygen: advantages and limitations of an enzymatic treatment to reduce false-positive results. Appl. Environ. Microbiol. 75: 5544-5554.
18. Schneider JE, Phillips JR, Pye Q, Maidt ML, Price S, Floyd RA. 1993. Methylene-blue and Rose-Bengal photoinactivation of RNA bacteriophages- comparative studies of 8-oxoguanine formation in isolated RNA. Arch. Biochem. Biophys. 301:91-97.
19. Baxter CS, Hofmann R, Templeton MR, Brown M, Andrews RC. 2007. Inactivation of adenovirus types 2, 5, and 41 in drinking water byUVlight, free chlorine, and monochloramine. J. Environ. Eng. 133:95-103.
20. Tars K, Bundule M, Fridborg K, Liljas L. 1997. The crystal structure of bacteriophage GA and a comparison of bacteriophages belonging to the major groups of Escherichia coli leviviruses. J. Mol. Biol. 271:759 -773.
21. Eaton AD, Clesceri LS, Rice EW, Greenberg AH (ed). 2005. Standard methods for the examination of water and wastewater, 21st ed. American Public Health Association, Washington, DC.
22. Mattle MJ, Kohn T. 2012. Inactivation and tailing during UV254 disinfection of viruses: contributions of viral aggregation, light shielding within viral aggregates, and recombination. Environ. Sci. Technol. 46:10022- 10030.
23. Rahn RO. 1997. Potassium iodide as a chemical actinometer for 254nm radiation: use of iodate as an electron scavenger. Photochem. Photobiol. 66:450-455.
24. Gates D. 1998. The chlorine dioxide handbook. American Water Works Association, Denver, CO.
25. Hoigne J, Bader H. 1994. Kinetics of reactions of chlorine dioxide (OClO) in water. 1. Rate constants for inorganic and organic-compounds. Water Res. 28:45-55.
26. Pecson BM, Ackermann M, Kohn T. 2011. Framework for using quantitative PCR as a nonculture based method to estimate virus infectivity. Environ. Sci. Technol. 45:2257-2263.
27. Du H, Fuh RCA, Li JZ, Corkan LA, Lindsey JS. 1998. PhotochemCAD: a computer-aided design and research tool in photochemistry. Photochem. Photobiol. 68:141-142.
28. Wigginton KR, Pecson BM, Sigstam T, Bosshard F, Kohn T. 2012. Virus inactivation mechanisms: impact of disinfectants on virus function and structural integrity. Environ. Sci. Technol. 46:12069 -12078.
29. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
30. Shevchenko A, Wilm M, Vorm O, Mann M. 1996. Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal. Chem. 68:850-858.
31. Hornstra LM, Smeets P, Medema GJ. 2011. Inactivation of bacteriophage MS2 upon exposure to very low concentrations of chlorine dioxide. Water Res. 45:1847-1855.
32. Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kale L, Schulten K. 2005. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26:1781-1802.
33. Wang JM, Wolf RM, Caldwell JW, Kollman PA, Case DA. 2004. Development and testing of a general amber force field. J. Comput. Chem. 25:1157-1174.
34. Humphrey W, Dalke A, Schulten K. 1996. VMD: visual molecular dynamics. J. Mol. Graph. Model. 14:33-38.
35. Noss CI, Hauchman FS, Olivieri VP. 1986. Chlorine dioxide reactivity with proteins. Water Res. 20:351-356.
36. Miller RL, Plagemann PG. 1974. Effect of ultraviolet light on mengovirus. Formation of uracil dimers, instability and degradation of capsid, and covalent linkage of protein to viral RNA. J. Virol. 13:729 -739.
37. Wigginton KR, Menin L, Sigstam T, Gannon G, Cascella M, Ben Hamidane H, Tsybin YO, Waridel P, Kohn T. 2012. UV radiation induces genome-mediated, site-specific cleavage in viral proteins. Chembiochem 13:837- 845.
38. Schneider JE, Tabatabaie T, Maidt L, Smith RH, Nguyen X, Pye Q, Floyd RA. 1998. Potential mechanisms of photodynamic inactivation of virus by methylene blue. I. RNA-protein crosslinks and other oxidative lesions in Q beta bacteriophage. Photochem. Photobiol. 67:350 -357.
39. Jensen RL, Arnbjerg J, Ogilby PR. 2012. Reaction of singlet oxygen with tryptophan in proteins: a pronounced effect of the local environment on the reaction rate. J. Am. Chem. Soc. 134:9820 -9826.
40. Dennis WH, Olivieri VP, Kruse CW. 1979. Mechanism of disinfection. Incorporation of Cl-36 into f2 virus. Water Res. 13:363-369.
41. Stewart DJ, Napolitano MJ, Bakhmutova-Albert EV, Margerum DW. 2008. Kinetics and mechanisms of chlorine dioxide oxidation of tryptophan. Inorg. Chem. 47:1639 -1647.
42. Davies MJ. 2005. The oxidative environment and protein damage. Biochim. Biophys. Acta 1703:93-109.