Shorthand notation for lipid structures derived from mass spectrometry

Journal of Lipid Research

Volumn 54, Issue 6, 2013, Pages 1523-1530

  Liebisch, Gerhard ^a   Vizcaíno, Juan Antonio ^b   Köfeler, Harald ^c   Trötzmüller, Martin ^c   Griffiths, William J ^d   Schmitz, Gerd ^a   Spener, Friedrich ^c   Wakelam, Michael J O ^e  

^a UNIVERSITY OF REGENSBURG   (Germany)

^b EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^c MEDICAL UNIVERSITY OF GRAZ   (Austria)

^d SWANSEA UNIVERSITY   (United Kingdom)

^e BABRAHAM INSTITUTE   (United Kingdom)

Author keywords

Abbreviation; Fatty acids; Glycerolipids; Glycerophospholipids; Lipidomics; Nomenclature; Sphingolipids; Sterols

Indexed keywords

DOCOSANOID; FATTY ACID; GLYCEROLIPID; GLYCEROPHOSPHOLIPID; ICOSANOID; SPHINGOLIPID; STEROL; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL BOND; CHEMICAL STRUCTURE; FACTUAL DATABASE; HIGH THROUGHPUT SCREENING; LIPID ANALYSIS; LIPIDOMICS; MASS SPECTROMETER; MASS SPECTROMETRY; MOLECULAR WEIGHT; NOMENCLATURE; OPTICAL RESOLUTION; PRIORITY JOURNAL; STANDARDIZATION; STEREOCHEMISTRY; STRUCTURE ANALYSIS; TANDEM MASS SPECTROMETRY;

ABBREVIATION; FATTY ACIDS; GLYCEROLIPIDS; GLYCEROPHOSPHOLIPIDS; LIPIDOMICS; NOMENCLATURE; SPHINGOLIPIDS; STEROLS;

DATABASES, FACTUAL; LIPIDS; MASS SPECTROMETRY; MOLECULAR STRUCTURE;

EID: 84877106380     PISSN: 00222275     EISSN: 15397262     Source Type: Journal    
DOI: 10.1194/jlr.M033506     Document Type: Article

References (15)

1. Fahy, E., S. Subramaniam, H. A. Brown, C. K. Glass, A. H. Merrill, Jr., R. C. Murphy, C. R. Raetz, D. W. Russell, Y. Seyama, W. Shaw, et al. 2005. A comprehensive classification system for lipids. J. Lipid Res. 46: 839-861.
2. Fahy, E., S. Subramaniam, R. C. Murphy, M. Nishijima, C. R. Raetz, T. Shimizu, F. Spener, G. van Meer, M. J. Wakelam, and E. A. Dennis. 2009. Update of the LIPID MAPS comprehensive classification system for lipids. J. Lipid Res. 50 (Suppl.): S9-S14.
3. Wenk, M. R. 2010. Lipidomics: new tools and applications. Cell. 143: 888-895.
4. Blanksby, S. J., and T. W. Mitchell. 2010. Advances in mass spectrometry for lipidomics. Annu. Rev. Anal. Chem. (Palo Alto Calif.). 3: 433-465.
5. Liebisch, G., B. Lieser, J. Rathenberg, W. Drobnik, and G. Schmitz. 2004. High-throughput quantification of phosphatidylcholine and sphingomyelin by electrospray ionization tandem mass spectrometry coupled with isotope correction algorithm. Biochim. Biophys. Acta. 1686: 108-117. (Pubitemid 39446883)
6. Brugger, B., G. Erben, R. Sandhoff, F. T. Wieland, and W. D. Lehmann. 1997. Quantitative analysis of biological membrane lipids at the low picomole level by nano-electrospray ionization tandem mass spectrometry. Proc. Natl. Acad. Sci. USA. 94: 2339-2344. (Pubitemid 27136876)
7. Zemski Berry, K. A., and R. C. Murphy. 2004. Electrospray ionization tandem mass spectrometry of glycerophosphoethanolamine plasmalogen phospholipids. J. Am. Soc. Mass Spectrom. 15: 1499-1508. (Pubitemid 39311700)
8. Murphy, R. C., and E. Fahy. 2010. Isoprostane nomenclature: more suggestions. Prostaglandins Leukot. Essent. Fatty Acids. 82: 69-70.
9. Han, X., and R. W. Gross. 2005. Shotgun lipidomics: electrospray ionization mass spectrometric analysis and quantitation of cellular lipidomes directly from crude extracts of biological samples. Mass Spectrom. Rev. 24: 367-412. (Pubitemid 40665798)
10. Pulfer, M., and R. C. Murphy. 2003. Electrospray mass spectrometry of phospholipids. Mass Spectrom. Rev. 22: 332-364.
11. Schwudke, D., J. T. Hannich, V. Surendranath, V. Grimard, T. Moehring, L. Burton, T. Kurzchalia, and A. Shevchenko. 2007. Top-down lipidomic screens by multivariate analysis of high-resolution survey mass spectra. Anal. Chem. 79: 4083-4093. (Pubitemid 46903157)
12. Shaner, R. L., J. C. Allegood, H. Park, E. Wang, S. Kelly, C. A. Haynes, M. C. Sullards, and A. H. Merrill, Jr. 2009. Quantitative analysis of sphingolipids for lipidomics using triple quadrupole and quadrupole linear ion trap mass spectrometers. J. Lipid Res. 50: 1692-1707.
13. Sullards, M. C., Y. Liu, Y. Chen, and A. H. Merrill, Jr. 2011. Analysis of mammalian sphingolipids by liquid chromatography tandem mass spectrometry (LC-MS/MS) and tissue imaging mass spectrometry (TIMS). Biochim. Biophys. Acta. 1811: 838-853.
14. Schuhmann, K., R. Almeida, M. Baumert, R. Herzog, S. R. Bornstein, and A. Shevchenko. 2012. Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes. J. Mass Spectrom. 47: 96-104.
15. Foster, J. M., P. Moreno, A. Fabregat, H. Hermjakob, C. Steinbeck, R. Apweiler, M. J. Wakelam, and J. A. Vizcaíno. LipidHome: a database of theoretical lipids optimised for high throughput mass spectrometry lipidomics. PLoS ONE. In press.