Reforestation Sites Show Similar and Nested AMF Communities to an Adjacent Pristine Forest in a Tropical Mountain Area of South Ecuador

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Haug, Ingeborg ^a   Setaro, Sabrina ^b   Suárez, Juan Pablo ^c  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b WAKE FOREST UNIVERSITY   (United States)

^c UNIVERSIDAD TÉCNICA PARTICULAR DE LOJA   (Ecuador)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 18S;

ARTICLE; BIODIVERSITY; CEDRELA; CONTROLLED STUDY; ECUADOR; FOREST; FUNGAL COLONIZATION; GENE SEQUENCE; MYCORRHIZA; NONHUMAN; PHYLOGENY; PLANT GROWTH; REFORESTATION; SURVIVAL; TAXONOMY;

CONSERVATION OF NATURAL RESOURCES; ECUADOR; FORESTRY; MOLECULAR TYPING; MYCOLOGICAL TYPING TECHNIQUES; MYCORRHIZAE; PLANT ROOTS; RNA, FUNGAL; RNA, RIBOSOMAL, 18S; SOIL MICROBIOLOGY; TREES;

ARBUSCULAR; ARCHAEOSPORALES; DIVERSISPORALES; FUNGI; GLOMERALES; OTUS;

EID: 84877090925     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0063524     Document Type: Article

References (69)

1. Myers N, Mittermeier RA, Mittermeier CG, da Fonseca GAB, Kent J, (2000) Biodiversity hotspots for conservation priorities. Nature 403: 853-858.
2. Brummitt N, Lughadha EN, (2003) Biodiversity: Where's hot and where's not. Conservation Biology 17: 1442-1448.
3. Brehm G, Pitkin LM, Hilt N, Fiedler K, (2005) Montane Andean rain forests are global diversity hotspot of geometrid moths. J. Biogeogr 32: 1621-1627.
4. Husband R, Herre EA, Turner SL, Gallery R, Young JPW, (2002) Molecular diversity of arbuscular mycorrhizal fungi and patterns of host association over time and space in a tropical forest. Molecular Ecology 11: 2669-2678.
5. Husband R, Herre EA, Young JPW, (2002) Temporal variation in the arbuscular mycorrhizal communities colonizing seedlings in a tropical forest. FEMS Microbiology Ecology 42: 131-136.
6. Öpik M, Moora M, Liira J, Zobel M, (2006) Composition of root-colonizing arbuscular mycorrhizal fungal communities in different ecosystems around the globe. Journal of Ecology 94: 778-790.
7. Thompson JN (2005) The Geographic Mosaic of Coevolution. Chicago:University of Chicago Press.
8. Mello MA, Marquitti FM, Guimaraes PR Jr, Kalko EK, Jordano P, et al. (2011) The missing part of seed dispersal networks: structure and robustness of bat-fruit interactions. PLoS ONE 6: e17395.
9. Fortuna MA, Stouffer DB, Olesen JM, Jordano P, Mouillot D, et al. (2010) Nestedness versus modularity in ecological networks: two sides of the same coin? Journal Animal Ecology 79: 811-817.
10. Medan D, Perazzo RP, Devoto M, Burgos E, Zimmermann MG, et al. (2007) Analysis and assembling of network structure in mutualistic systems. Journal of Theoretical Biology 246: 510-521.
11. Joppa LN, Montoya JM, Solé R, Sanderson J, Pimm SL, (2010) On nestedness in ecological networks. Evolution Ecology Research 12: 35-46.
12. Bastolla U, Fortuna MA, Pascual-Garcia, Ferrera A, Luque B, et al. (2009) The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 458: 1018-1020.
13. Bascompte J, (2010) Structure and dynamics of ecological networks. Science 329: 765-766.
14. Jacquemyn H, Merckx V, Brys R, Tyteca D, Cammue BP, et al. (2011) Analysis of network architecture reveals phylogenetic constraints on mycorrhizal specificity in the genus Orchis (Orchidaceae). New Phytologist 192: 518-528.
15. Martos F, Munoz F, Pailler T, Kottke I, Gonneau C, et al. (2012) Epiphytism as a major ecological and evolutionary constraint on mycorrhizal networks of tropical orchids. Molecular Ecology 21: 5098-5109.
16. Montesinos-Navarro A, Segarra-Moragues JG, Valiente-Banuet A, Verdú M, (2012) The network structure of plant-arbuscular mycorrhizal fungi. New Phytologist 194: 536-547.
17. Chagnon PL, Bradley RL, Klironomos JN, (2012) Using ecological network theory to evaluate the causes and consequences of arbuscular mycorrhizal community structure. New Phytologist 194: 307-312.
18. Kottke I, Setaro S, Haug I, Herrera P, Cruz D, et al. (2013) Mycorrhiza networks promote biodiversity and stabilize the tropical mountain rain forest ecosystem-perspectives for understanding complex communities. In: Bendix J, Beck E, Bräuning A, Makeschin F, Mosandl R, Scheu S, Wilcke W, Ecosystem Services, Biodiversity and Environmental Change in a Tropical Mountain Ecosystem of South Ecuador. Ecological Studies Vol. 221. Berlin: Springer. In press.
19. Haug I, Wubet T, Weiß M, Aguirre N, Weber M, et al. (2010) Species-rich but distinct arbuscular mycorrhizal communities in reforestation plots on degraded pastures and in neighboring pristine tropical mountain rain forest. Journal of Tropical Ecology 51: 125-148.
20. Memmott J, Waser NM, Price MV, (2004) Tolerance of pollinator networks to species extinctions. Proceedings of the Royal Society of London B 271: 2605-2611.
21. Fortuna MA, Bascompte J, (2006) Habitat loss and the structure of plant-animal mutualistic networks. Ecology Letters 9: 281-286.
22. Homeier J, Breckle S-W, Günter S, Rollenbeck RT, Leuschner C, (2010) Tree diversity, forest structure and productivity along altitudinal and topographical gradients in a species-rich Ecuadorian montane rain forest. Biotropica 42: 140-148.
23. Kuptz D, Grams T, Günter S, (2010) Light acclimation of four native tree species in felling gaps within a tropical mountain rain forest. Trees 24: 117-127.
24. Palomeque X (2012) Natural succession and tree plantation as alternatives for restoring abandoned lands in the Andes of Southern Ecuador: Aspects of facilitation and competition. PhD, TU München.
25. Günter S, Gonzalez P, Álvarez G, Aguirre N, Palomeque X, et al. (2009) Determinants for successful regeneration of abandoned pastures in the Andes: Soil condition and vegetation cover. Forest Ecology and Management 258: 81-91.
26. Günter S, González P, Alvarez G, Aguirre N, Palomeque X, et al. (2009) Determinants for successful reforestation of abandoned pastures in the Andes: Soil conditions and vegetation cover. Forest Ecology and Management 258: 81-91.
27. Weber M, Günter S, Aguirre N, Stimm B, Mosandl R (2008) Reforestation of abandoned pastures: Silvicultural means to accelerate forest recovery and biodiversity. In: Gradstein SR, Homeier J, Gansert D, The tropical mountain forest.Patterns and Processes in a Biodiversity Hotspot.Biodiversity and Ecology Series 2.Göttingen: Universitätsverlag Göttingen.431-441.
28. Aguirre NM (2007) Silvicultural distributions to the reforestation with native species in the tropical mountain rain forest region of South Ecuador. PhD, Munich.
29. Grace C, Stribley DP (1991) A safer procedure for routine stainining of vesicular-arbuscular mycorrhizal fungi. Mycol Res: 1160-1162.
30. White TJ, Bruns TD, Lee SB, Taylor JW (1990) Analysis of phylogenetic relationships by amplification and direct sequencing of ribosomal RNA genes. Innis MA, Gelfand DH, Sninsky JN, White TJ, PCR protocols: A guide to methods and application. New York:Academic Press. pp. 315-322.
31. Lee J, Lee S, Young JPW, (2008) Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi. FEMS Microbiol Ecol 65: 339-349.
32. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-Blast: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
33. Huber T, Faulkner G, Hugenholtz P, (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
34. Kottke I, Haug I, Setaro S, Suárez JP, Weiß M, et al. (2008) Guilds of mycorrhizal fungi and their relation to trees, ericads, orchids and liverworts in a neotropical mountain rain forest. Basic and Applied Ecology 9: 13-23.
35. Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
36. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and other Methods), version 4b10.Sunderland, MA: Sinauer Associates.
37. Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 83-791.
38. Göker M, García-Blázquez G, Voglmayr H, Tellería MT, Martín MP, (2009) Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora. PLoS One 29: e6319.
39. Colwell RK, Chao A, Gotelli NJ, Lin SY, Mao CX, et al. (2012) Models and estimators linking individual-based and sample-based rarefaction, extrapolation, and comparison of assemblages. Journal of Plant Ecology 5: 3-21.
40. Chao A, Chazdon RL, Colwell RK, Shen T-J, (2005) A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecology Letters 8: 148-159.
41. Chao A, Chazdon RL, Colwell RK, Shen T-J, (2006) Abundance-based similarity indices and their estimation when there are unseen species in samples. Biometrics 62: 361-371.
42. Jost L, Chao A, Chazdon RL (2011) Compositional similarity and beta diversity. In: Maguarran A, McGill B, Biological Diversity: Frontiers in Measurement and Assessment.Oxford:Oxford University Press. pp. 66-84.
43. Guimarães PR, Guimarães P, (2006) Improving the analyses of nestedness for large sets of matrices. Environmental Modelling and Software 21: 1512-1513.
44. Dormann CF, Gruber B, Fruend J (2008) Introducing the bipartite Package: Analysing Ecological Networks. R News. doi: 10.1159/000265935.
45. Guimera R, Nunes Amaral LA, (2005) Functional cartography of complex metabolic networks. Nature 433: 895-900.
46. Meskens C, McKenna D, Hance T, Windsor D, (2011) Host plant taxonomy and phenotype influence the structure of a neotropical host plant-hispine beetle food web. Ecological Entomology 36: 480-489.
47. Batagelj Vl, Mrvar A (2003) Pajek - Analysis and Visualization of Large Networks. In: Juenger M, Mutzel P, Graph Drawing Software. Berlin: Springer. pp. 77-103.
48. Blüthgen N, Menzel F, Bluethgen N, (2006) Measuring specialization in species interaction networks. BMC Ecology 6: 9.
49. Kivlin SN, Hawkes CV, Treseder KK, (2011) Global diversity and distibution of arbuscular mycorrhizal fungi. Soil Biology & Biochemistry 43: 2294-2303.
50. Öpik M, Metsis M, Daniell TJ, Zobel M, Moora M, (2009) Large-scale parallel 454 sequencing reveals host ecological group specifity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist 184: 424-437.
51. Lekberg Y, Schnoor T, Kjoller R, Gibbons SM, Hansen LH, et al. (2012) 454-sequencing reveals stochastic local reassembly and high disturbance tolerance within arbuscular mycorrhizal fungal communities. Journal of Ecology 100: 151-160.
52. Homeier J, Werner FA (2007) Spermatophyta checklist - Reserva Biológica San Francisco (Prov.Zamora-Chinchipe, S. Ecuador). In: Liede-Schumann S, Breckle S-W, Provisional checklist of flora and fauna of San Francisco Valley and its surroundings. Ecotropcial Monographs 4: 15-58.
53. Fitter AH, (2005) Darkness visible: reflections on underground ecology. Journal of Ecology 93: 231-243.
54. Alguacil MM, Torrecillas E, Roldán A, Díaz G, Torres MP, (2012) Perennial plant species from semiarid gypsum soils support higher AMF diversity in roots than the annual Bromus rubens. Soil Biol. Biochem 49: 132-138.
55. Moora M, Berger S, Davison J, Öpik M, Bommarco R, et al. (2011) Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing. Journal of Biogeography 38: 1305-1317.
56. Liu Y, He J, Shi G, An L, Öpik M, et al. (2011) Diverse communities of arbuscular mycorrhizal fungi inhabit sites with very high altitude in Tibet Plateau. FEMS Microbiol Ecol 78: 355-365.
57. Schnoor TK, Lekberg Y, Rosendahl S, Olsson PA, (2011) Mechanical disturbance as a determinator of arbuscular mycorrhizal fungal communities in semi-natural grassland. Mycorrhiza 21: 211-220.
58. Öpik M, Moora M, (2012) Missing nodes and links in mycorrhizal networks. New Phytologist 194: 304-306.
59. Dumbrell AJ, Nelson M, Helgason T, Dytham C, Fitter AH, (2010) Idiosyncrasy and overdominance in the structure of natural communities of arbuscular mycorrhizal fungi: is there a role for stochastic processes? Journal of Ecology 98: 419-428.
60. Krüger M, Krüger C, Walker C, Stockinger H, Schüßler A, (2012) Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytologist 193: 970-983.
61. Öpik M, Moora M, Zobel M, Saks Ü, Wheatley R, et al. (2008) High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest. New Phytologist 179: 867-876.
62. Wirsel SGR, (2004) Homogenous stands of a wetland grass harbour diverse consortia of arbuscular mycorrhizal fungi. FEMS Microbiology Ecology 48: 129-138.
63. Sykorová Z, Ineichen K, Wiemken A, Redecker D, (2007) The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from field, from bait plants transplanted to the field, and from a greenhouse trap experiment. Mycorrhiza 18: 1-14.
64. Cesaro P, van Tuinen D, Copetta A, Chatagnier O, Berta G, et al. (2008) Preferential colonization of Solanum tuberosum L. roots by the fungus Glomus intraradices in arable soil of a potato farming area. Applied and Environmental Microbiology 74: 5776-5783.
65. Alguacil MM, Torrecillas E, Hernández G, Roldán A, (2012) Changes in the diversity of soil arbuscular mycorrhizal fungi after cultivation for biofuel production in a Guantanamo (Cuba) tropical system. PloS ONE 7: e34887.
66. Blaszkowski J, Czerniawska B, Wubet T, Schäfer T, Buscot F, et al. (2008) Glomus irregulare, a new arbuscular mycorrhizal fungus in the Glomeromycota. Mycotaxon 106: 247-267.
67. Kiers ET, Duhamel M, Beesetty Y, Mensah JA, Franken O, et al. (2011) Reciprocal rewards stabilize cooperation in the mycorrhizal symbiosis. Science 333 (6044): 880-882.
68. Almeida-Neto M, Guimarães P, Guimarães PR, Loyola RD, Ulrich W, (2008) A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos 117: 1227-1239.
69. Davison J, Öpik M, Daniell TJ, Moora M, Zobel M, (2011) Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiol Ecol 78: 103-115.