Isolation and characterisation of new microsatellite markers for the stonefly Brachyptera braueri comparing a traditional approach with high throughput 454 sequencing

Conservation Genetics Resources

Volumn 5, Issue 2, 2013, Pages 413-416

  Geismar, Jutta ^a   Nowak, Carsten ^a,b  

^a SENCKENBERG DEUTSCHES ENTOMOLOGISCHES INSTITUT   (Germany)

^b BIODIVERSITY AND CLIMATE RESEARCH CENTRE BIK F   (Germany)

Author keywords

Aquatic insects; Dispersal; Parallel pyrosequencing; Short tandem repeats

Indexed keywords

BRACHYPTERA; HEXAPODA; PLECOPTERA;

EID: 84876849018     PISSN: 18777252     EISSN: 18777260     Source Type: Journal    
DOI: 10.1007/s12686-012-9816-1     Document Type: Article

References (12)

1. Brettfeld R, Bellstedt R (2000) Wiederfund der steinfliege brachyptera braueri (Klapálek, 1900) nach fast hundert Jahren in Thüringen (Insecta: Plecoptera). Abhandlungen und Berichte des Museums der Nat Gotha 21: 111-112.
2. Holleley CE, Geerts PG (2009) Multiplex manager 1. 0: a cross-platform computer program that plans and optimizes multiplex PCR. Biotechniques 46(7): 511-517. doi: 10. 2144/000113156.
3. Küttner R, Hohlmann M, Plesky B, Voigt H (2008) Zur verbreitung und ökologie von Brachyptera braueri (Klapálek, 1900) (Insecta: Plecoptera) in mitteldeutschland unter berücksichtigung weiterer plecoptera-arten des zeitigen frühjahres. Lauterbornia 63: 31-50.
4. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and clustal X version 2. 0. Bioinformatics 23(21): 2947-2948. doi: 10. 1093/bioinformatics/btm404.
5. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen ZT, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer MLI, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu PG, Begley RF, Rothberg JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057): 376-380. doi: 10. 1038/nature03959.
6. Meglecz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, Martin J-F (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26(3): 403-404. doi: 10. 1093/bioinformatics/btp670.
7. Ronaghi M (2001) Pyrosequencing sheds light on DNA sequencing. Genome Res 11(1): 3-11. doi: 10. 1101/gr. 11. 1. 3.
8. Rousset F (2008) GENEPOP'007: a complete re-implementation of the GENEPOP software for windows and linux. Mol Ecol Resour 8(1): 103-106. doi: 10. 1111/j. 1471-8286. 2007. 01931. x.
9. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol (Clifton, NJ) 132: 365-386.
10. van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4(3): 535-538. doi: 10. 1111/j. 1471-8286. 2004. 00684. x.
11. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31(13): 3406-3415. doi: 10. 1093/nar/gkg595.
12. Zwick P (1992) Stream habitat fragmentation-a threat to biodiversity. Biodivers Conserv 1(2): 80-97. doi: 10. 1007/bf00731036.