The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA

Virology Journal

Volumn 10, Issue , 2013, Pages

  Maurer Stroh, Sebastian ^a,b,c   Lee, Raphael Tc ^a   Gunalan, Vithiagaran ^a   Eisenhaber, Frank ^a,d,e  

^a BIOINFORMATICS INSTITUTE   (Singapore)

^b MINISTRY OF HEALTH   (Singapore)

^c NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^d NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^e NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 28S;

ARTICLE; GENE SEQUENCE; HOST; INFLUENZA VIRUS A H7N3; MEXICO; NONHUMAN; PATHOGENESIS; PATHOGENICITY; PHYLOGENY; POULTRY; RNA ANALYSIS; RNA CLEAVAGE; RNA SEQUENCE; RNA STRUCTURE; VIRUS STRAIN; VIRUS TRANSMISSION;

ANIMALS; CHICKENS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS, H7N3 SUBTYPE; INFLUENZA IN BIRDS; MEXICO; PHYLOGENY; RECOMBINATION, GENETIC; RNA, RIBOSOMAL, 28S; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

AVES; MAMMALIA;

EID: 84876791304     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-139     Document Type: Article

References (40)

1. Host shifts and molecular evolution of H7 avian influenza virus hemagglutinin. Lebarbenchon C, Stallknecht DE, Virol J 2011 8 328 10.1186/1743-422X-8-328 21711553
2. Receptor-binding profiles of H7 subtype influenza viruses in different host species. Gambaryan AS, Matrosovich TY, Philipp J, Munster VJ, Fouchier RAM, Cattoli G, Capua I, Krauss SL, Webster RG, Banks J, Bovin NV, Klenk H-D, Matrosovich MN, J Virol 2012 86 4370 4379 10.1128/JVI.06959-11 22345462
3. Highly pathogenic avian influenza, Mexico. Follow-up report No. 1. Information received on 26/06/2012 from Dr Hugo fragoso sánchez, director general de salud animal, SENASICA, SAGARPA, Mexico http://www.oie.int/wahis-2/ public/wahid.php/Reviewreport/Review?reportid=12074
4. Highly pathogenic avian influenza in Mexico (H7N3)-a significant threat to poultry production not to be underestimated. FAO, EMPRES WATCH 2012 26 http://www.fao.org/docrep/016/an395e/an395e.pdf
5. Notes from the field: highly pathogenic avian influenza a (H7N3) virus infection in Two poultry workers-Jalisco, Mexico, July 2012 http://www.cdc.gov/ mmwr/preview/mmwrhtml/mm6136a4.htm?s-cid=mm6136a4-e 22971746
6. Structure of the hemagglutinin precursor cleavage site, a determinant of influenza pathogenicity and the origin of the labile conformation. Chen J, Lee KH, Steinhauer DA, Stevens DJ, Skehel JJ, Wiley DC, Cell 1998 95 409 417 10.1016/S0092-8674(00)81771-7 9814710 (Pubitemid 28507328)
7. Influenza viruses, cell enzymes, and pathogenicity. Rott R, Klenk HD, Nagai Y, Tashiro M, Am J Respir Crit Care Med 1995 152 16 19 10.1164/ajrccm/152.4-Pt-2.S16 7551406
8. The pathogenesis of influenza in humans. Zambon MC, Rev Med Virol 2001 11 227 241 10.1002/rmv.319 11479929 (Pubitemid 32737646)
9. Origin and molecular changes associated with emergence of a highly pathogenic H5N2 influenza virus in Mexico. Horimoto T, Rivera E, Pearson J, Senne D, Krauss S, Kawaoka Y, Webster RG, Virology 1995 213 223 230 10.1006/viro.1995.1562 7483266
10. Heterogeneity in the haemagglutinin gene and emergence of the highly pathogenic phenotype among recent H5N2 avian influenza viruses from Mexico. García M, Crawford JM, Latimer JW, Rivera-Cruz E, Perdue ML, J Gen Virol 1996 77 Pt 7 1493 1504 8757992 (Pubitemid 26248664)
11. Intersegmental recombination between the haemagglutinin and matrix genes was responsible for the emergence of a highly pathogenic H7N3 avian influenza virus in British Columbia. Pasick J, Handel K, Robinson J, Copps J, Ridd D, Hills K, Kehler H, Cottam-Birt C, Neufeld J, Berhane Y, Czub S, J Gen Virol 2005 86 727 731 10.1099/vir.0.80478-0 15722533 (Pubitemid 40331252)
12. Recombination resulting in virulence shift in avian influenza outbreak. Suarez DL, Senne DA, Banks J, Brown IH, Essen SC, Lee C-W, Manvell RJ, Mathieu-Benson C, Moreno V, Pedersen JC, Panigrahy B, Rojas H, Spackman E, Alexander DJ, Chile. Emerging Infect. Dis. 2004 10 693 699 10.3201/eid1004. 030396 (Pubitemid 38420303)
13. Avian influenza virus hemagglutinins H2, H4, H8, and H14 support a highly pathogenic phenotype. Veits J, Weber S, Stech O, Breithaupt A, Gräber M, Gohrbandt S, Bogs J, Hundt J, Teifke JP, Mettenleiter TC, Stech J, Proc Natl Acad Sci USA 2012 109 2579 2584 10.1073/pnas.1109397109 22308331
14. Insertion of a multibasic cleavage motif into the hemagglutinin of a low-pathogenic avian influenza H6N1 virus induces a highly pathogenic phenotype. Munster VJ, Schrauwen EJA, De Wit E, Van den Brand JMA, Bestebroer TM, Herfst S, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM, J Virol 2010 84 7953 7960 10.1128/JVI.00449-10 20519405
15. Immune-related gene expression in response to H5N1 avian influenza virus infection in chicken and duck embryonic fibroblasts. Liang Q, Luo J, Zhou K, Dong J, He H, Mol Immunol 2011 48 924 930 10.1016/j.molimm.2010.12.011 21256597
16. Insertion of a multibasic cleavage site in the haemagglutinin of human influenza H3N2 virus does not increase pathogenicity in ferrets. Schrauwen EJA, Bestebroer TM, Munster VJ, De Wit E, Herfst S, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM, J Gen Virol 2011 92 1410 1415 10.1099/vir.0.030379-0 21346026
17. The multibasic cleavage site of the hemagglutinin of highly pathogenic A/Vietnam/1203/2004 (H5N1) avian influenza virus acts as a virulence factor in a host-specific manner in mammals. Suguitan AL Jr, Matsuoka Y, Lau Y-F, Santos CP, Vogel L, Cheng LI, Orandle M, Subbarao K, J Virol 2012 86 2706 2714 10.1128/JVI.05546-11 22205751
18. The multibasic cleavage site in H5N1 virus is critical for systemic spread along the olfactory and hematogenous routes in ferrets. Schrauwen EJA, Herfst S, Leijten LM, Van Run P, Bestebroer TM, Linster M, Bodewes R, Kreijtz JHCM, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM, Kuiken T, Van Riel D, J Virol 2012 86 3975 3984 10.1128/JVI.06828-11 22278228
19. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ, Nucleic Acids Res 1997 25 3389 402 10.1093/nar/25.17.3389 9254694 (Pubitemid 27359211)
20. Database resources of the National Center for Biotechnology Information. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J, Nucleic Acids Res 2011 39 38 51 10.1093/nar/gkq1172 21097890
21. Effects of rRNA gene copy number and nucleolar variation on early development: inhibition of gastrulation in rDNA-deficient chick embryos. Delany ME, Muscarella DE, Bloom SE, J Hered 1994 85 211 217 8014461 (Pubitemid 24188034)
22. Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Khatchikian D, Orlich M, Rott R, Nature 1989 340 156 157 10.1038/340156a0 2544809 (Pubitemid 19175369)
23. Ribosomal RNA gene copy number and nucleolar-size polymorphisms within and among chicken lines selected for enhanced growth. Su MH, Delany ME, Poult Sci 1998 77 1748 1754 9872573 (Pubitemid 128529096)
24. Nonhomologous recombination between the hemagglutinin gene and the nucleoprotein gene of an influenza virus. Orlich M, Gottwald H, Rott R, Virology 1994 204 462 465 10.1006/viro.1994.1555 8091680 (Pubitemid 24305363)
25. Do hemagglutinin genes of highly pathogenic avian influenza viruses constitute unique phylogenetic lineages? Röhm C, Horimoto T, Kawaoka Y, Süss J, Webster RG, Virology 1995 209 664 670 10.1006/viro.1995.1301 7778300
26. Novel insights into proteolytic cleavage of influenza virus hemagglutinin. Bertram S, Glowacka I, Steffen I, Kühl A, Pöhlmann S, Rev Med Virol 2010 20 298 310 10.1002/rmv.657 20629046
27. Activation of an influenza virus A/turkey/Oregon/71 HA insertion variant by the subtilisin-like endoprotease furin. Morsy J, Garten W, Rott R, Virology 1994 202 988 991 10.1006/viro.1994.1424 8030261 (Pubitemid 24254916)
28. Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: four approaches that performed well in CASP8. Krieger E, Joo K, Lee J, Lee J, Raman S, Thompson J, Tyka M, Baker D, Karplus K, Proteins 2009 77 Suppl 9 114 122 19768677
29. The crystal structure of the proprotein processing proteinase furin explains its stringent specificity. Henrich S, Cameron A, Bourenkov GP, Kiefersauer R, Huber R, Lindberg I, Bode W, Than ME, Nat Struct Biol 2003 10 520 526 10.1038/nsb941 12794637 (Pubitemid 36792902)
30. Prediction of proprotein convertase cleavage sites. Duckert P, Brunak S, Blom N, Protein Eng Des Sel 2004 17 107 112 10.1093/protein/gzh013 14985543 (Pubitemid 38173174)
31. Furin: a mammalian subtilisin/Kex2p-like endoprotease involved in processing of a wide variety of precursor proteins. Nakayama K, Biochem J 1997 327 Pt 3 625 635 9599222 (Pubitemid 27487665)
32. Sporadic human cases of swine-origin influenza before 2009 share the Sa epitope. Maurer-Stroh S, Paing SST, Lee RTC, Eisenhaber F, Cell Cycle 2010 9 3826 3828 10.4161/cc.9.18.13166 20930526
33. Airborne transmission of influenza A/H5N1 virus between ferrets. Herfst S, Schrauwen EJA, Linster M, Chutinimitkul S, De Wit E, Munster VJ, Sorrell EM, Bestebroer TM, Burke DF, Smith DJ, Rimmelzwaan GF, Osterhaus ADME, Fouchier RAM, Science 2012 336 1534 1541 10.1126/science.1213362 22723413
34. The potential for respiratory droplet-transmissible A/H5N1 influenza virus to evolve in a mammalian host. Russell CA, Fonville JM, Brown AEX, Burke DF, Smith DL, James SL, Herfst S, Van Boheemen S, Linster M, Schrauwen EJ, Katzelnick L, Mosterín A, Kuiken T, Maher E, Neumann G, Osterhaus ADME, Kawaoka Y, Fouchier RAM, Smith DJ, Science 2012 336 1541 1547 10.1126/science.1222526 22723414
35. Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Imai M, Watanabe T, Hatta M, Das SC, Ozawa M, Shinya K, Zhong G, Hanson A, Katsura H, Watanabe S, Li C, Kawakami E, Yamada S, Kiso M, Suzuki Y, Maher EA, Neumann G, Kawaoka Y, Nature 2012 486 420 428 22722205
36. Recent developments in the MAFFT multiple sequence alignment program. Katoh K, Toh H, Brief. Bioinformatics 2008 9 286 98 10.1093/bib/bbn013 18372315 (Pubitemid 351890825)
37. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O, Syst Biol 2010 59 307 321 10.1093/sysbio/syq010 20525638
38. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, Mol Biol Evol 2011 28 2731 2739 10.1093/molbev/msr121 21546353
39. Structures of receptor complexes of a North American H7N2 influenza hemagglutinin with a loop deletion in the receptor binding site. Yang H, Chen L-M, Carney PJ, Donis RO, Stevens J, PLoS Pathog 2010 6 1001081 10.1371/journal.ppat.1001081 20824086
40. Structure and Receptor Complexes of the Hemagglutinin from a Highly Pathogenic H7N7 Influenza Virus. Yang H, Carney PJ, Donis RO, Stevens J, J Virol 2012 86 8645 8652 10.1128/JVI.00281-12 22674977