Epidemiological history and phylogeography of West Nile virus lineage 2

Infection, Genetics and Evolution

Volumn 17, Issue , 2013, Pages 46-50

  Ciccozzi, Massimo ^a   Peletto, Simone ^b   Cella, Eleonora ^a   Giovanetti, Marta ^a   Lai, Alessia ^c   Gabanelli, Elena ^c   Acutis, Pier Luigi ^b   Modesto, Paola ^b   Rezza, Giovanni ^a   Platonov, Alexander E ^d   Lo Presti, Alessandra ^a   Zehender, Gianguglielmo ^c  

^a ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^b LIGURIA E VALLE D AOSTA   (Italy)

^c UNIVERSITY OF MILAN   (Italy)

^d CENTRAL RESEARCH INSTITUTE OF EPIDEMIOLOGY   (Russian Federation)

Author keywords

Epidemiology; Phylogeography; West Nile virus

Indexed keywords

ARTICLE; CONTROLLED STUDY; E GENE; EVOLUTIONARY RATE; GENE SEQUENCE; GENETIC EPIDEMIOLOGY; MOLECULAR CLOCK; MOLECULAR EVOLUTION; NONHUMAN; NS5 GENE; PHYLOGENETIC TREE; PHYLOGEOGRAPHY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRUCTURAL GENE; VIRUS GENE; VIRUS STRAIN; WEST NILE FLAVIVIRUS; WEST NILE VIRUS LINEAGE 2;

ANIMALS; BAYES THEOREM; EUROPE; EVOLUTION, MOLECULAR; HISTORY, 20TH CENTURY; HISTORY, 21ST CENTURY; HUMANS; PHYLOGENY; PHYLOGEOGRAPHY; VIRAL ENVELOPE PROTEINS; VIRAL NONSTRUCTURAL PROTEINS; WEST NILE FEVER; WEST NILE VIRUS;

AVES; EQUIDAE; WEST NILE VIRUS;

EID: 84876734179     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.03.034     Document Type: Article

References (35)

1. Bagnarelli P., Marinelli K., Trotta D., Monachetti A., Tavio M., Del Gobbo R., Capobianchi M., Menzo S., Nicoletti L., Magurano F., Varaldo P. Human case of autochthonous West Nile virus lineage 2 infection in Italy, September 2011. Euro Surveill. 2011, 16(43). pii: 20002.
2. Bakonyi T., Hubalek Z., Rudolf I., Nowotny N. Novel flavivirus or new lineage of West Nile virus, Central Europe. Emerg. Infect. Dis. 2005, 11:225-231.
3. Bakonyi T., Ivanics E., Erdelyi K., Ursu K., Ferenczi E., Weissenböck H., Nowotny N. Lineage 1 and 2 strains of encehalitic West Nile virus, Central Europe. Emerg. Infect. Dis. 2006, 12:618-623.
4. Bondre V.P., Jadi R.S., Mishra A.C., Yergolkar P.N., Arankalle V.A. West Nile virus isolates from India: evidence for a distinct genetic lineage. J. Gen. Virol. 2007, 88:875-884.
5. Brinton M.A. The molecular biology of West Nile virus: a new invader of the western hemisphere. Annu. Rev. Microbiol. 2002, 56:371-402.
6. Calistri P., Giovannini A., Hubalek Z., Ionescu A., Monaco F., Savini G., Lelli R. Epidemiology of West Nile in Europe and in the Mediterranean basin. Open Virol. J. 2010, 4:29-37.
7. Chaskopoulou A., Dovas C., Chaintoutis S., Bouzalas I., Ara G., Papanastassopoulou M. Evidence of enzootic circulation of West Nile virus (Nea Santa-Greece-2010, lineage 2), Greece, May to July 2011. Euro Surveill. 2011, 16(31). pii: 19933.
8. Danis K., Papa A., Papanikolaou E., Dougas G., Terzaki I., Baka A., Vrioni G., Kapsimali V., Tsakris A., Kansouzidou A., Tsiodras S., Vakalis N., Bonovas S., Kremastinou J. Ongoing outbreak of West Nile virus infection in humans, Greece, July to August 2011. Euro Surveill. 2011, 16(34). pii: 19951.
9. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
10. Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 2005, 22:1185-1192.
11. Hall T.A. Bioedit: a user-friendly biological sequence alignment, editor and analysis program for Windows 95/98 NT. Nucl. Acids Symp. Ser. 1999, 41:95-98.
12. Hayes C.G. West Nile virus: Uganda, 1937, to New York City, 1999. Ann. NY. Acad. Sci. 2001, 951:25-37.
13. Hayes E.B., Komar N., Nasci R.S., Montgomery S.P., O'Leary D.R., Campbell G.L. Epidemiology and transmission dynamics of West Nile virus disease. Emerg. Infect. Dis. 2005, 11:1167-1173.
14. Kass R., Raftey A. Bayes Factors. J. Am. Stat. Assoc. 1995, 90:773.
15. Kramer L.D., Styer L.M., Ebel G.D. A global perspective on the epidemiology of West Nile virus. Annu. Rev. Entomol. 2008, 53:61-81.
16. Lanciotti R.S., Roehrig J.T., Deubel V., Smith J., Parker M., Steele K., Crise B., Volpe K.E., Crabtree M.B., Scherret J.H., Hall R.A., MacKenzie J.S., Cropp C.B., Panigrahy B., Ostlund E., Schmitt B., Malkinson M., Banet C., Weissman J., Komar N., Savage H.M., Stone W., McNamara T., Gubler D.J. Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States. Science 1999, 286:2333-2337.
17. Lanciotti R.S., Ebel G.D., Deubel V., Kerst A.J., Murri S., Meyer R., Bowen M., McKinney N., Morrill W.E., Crabtree M.B., Kramer L.D., Roehrig J.T. Complete genome sequences and phylogenetic analysis of West Nile virus strains isolated from the United States, Europe, and the Middle East. Virology 2002, 298:96-105.
18. Lvov D.K., Butenko A.M., Gromashevsky V.L., Kovtunov A.I., Prilipov A.G., Kinney R., Aristova V.A., Dzharkenov A.F., Samokhvalov E.I., et al. West Nile virus and other zoonotic viruses in Russia: examples of emerging-reemerging situations. Arch. Virol. Suppl. 2004, 18:85-96.
19. Mackenzie J.S., Williams D.T. The zoonotic flaviviruses of southern, south-eastern and eastern Asia, and Australasia: the potential for emergent viruses. Zoonoses Public Health 2009, 56:338-356.
20. Murgue B., Murri S., Triki H., Deubel V., Zeller H.G. West Nile in the Mediterranean basin: 1950-2000. Ann. NY. Acad. Sci. 2001, 951:117-126.
21. Papa A., Danis K., Baka A., Bakas A., Dougas G., Lytras T., Theocharopoulos G., Chrysagis D., Vassiliadou E., Kamaria F., Liona A., Mellou K., Saroglou G., Panagiotopoulos T. Ongoing outbreak of West Nile virus infections in humans in Greece, July-August 2010. Euro Surveill. 2010, 15(34). pii: 19644.
22. Papa A., Bakonyi T., Xanthopoulou K., Vázquez A., Tenorio A., Nowotny N. Genetic characterization of West Nile virus lineage 2, Greece, 2010. Emerg. Infect. Dis. 2011, 17:920-922.
23. Platonov A.E., Fedorova M.V., Karan L.S., Shopenskaya T.A., Platonova O.V., Zhuravlev V.I. Epidemiology of West Nile infection in Volgograd, Russia, in relation to climate change and mosquito (Diptera: Culicidae) bionomics. Parasitol. Res. 2008, 103(Suppl. 1):45-53.
24. Platonov A.E., Karan' L.S., Shopenskaia T.A., Fedorova M.V., Koliasnikova N.M., Rusakova N.M., Shishkina L.V., Arshba T.E., Zhuravlev V.I., Govorukhina M.V., Valentseva A.A., Shipulin G.A. Genotyping of West Nile fever virus strains circulating in southern Russia as an epidemiological investigation method: principles and results. Zh. Mikrobiol. Epidemiol. Immunobiol. 2011, 2:29-37. (In Russian).
25. Posada D., Buckley T.R. Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53:793-808.
26. Rizzo C., Salcuni P., Nicoletti L., Ciufolini M.G., Russo F., Masala R., Frongia O., Finarelli A.C., Gramegna M., Gallo L., Pompa M.G., Rezza G., Salmaso S., Declich S. Epidemiological surveillance of West Nile neuroinvasive diseases in Italy, 2008 to 2011. Euro Surveill. 2012, 17(20). pii: 20172.
27. Savini G., Capelli G., Monaco F., Polci A., Russo F., Di Gennaro A., Marini V., Teodori L., Montarsi F., Pinoni C., Pisciella M., Terregino C., Marangon S., Capua I., Lelli R. Evidence of West Nile virus lineage 2 circulation in Northern Italy. Vet. Microbiol. 2012, 158:267-273.
28. Shopenskaya T.A., Fedorova M.V., Karan L.S., Frolov A.Y., Malenko G.V., Levina L.S., Pogodina V.V., Platonov A.E. New variant of West Nile virus and its potential epizootic and epidemic importance. Epidemiologiia i Infektsionnye Bolezni [Epidemiology and Infectious Diseases] 2008, 5:38-44. (In Russian).
29. Sirbu A., Ceianu C.S., Panculescu-Gatej R.I., Vazquez A., Tenorio A., Rebreanu R., Niedrig M., Nicolescu G., Pistol A. Outbreak of West Nile virus infection in humans, Romania, July to October 2010. Euro Surveill. 2011, 16(2). pii: 19762.
30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. CLUSTAL_X windows interface. flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1994, 25:4876-4882.
31. Valiakos G., Touloudi A., Iacovakis C., Athanasiou L., Birtsas P., Spyrou V., Billinis C. Molecular detection and phylogenetic analysis of West Nile virus lineage 2 in sedentary wild birds (Eurasian magpie), Greece, 2010. Euro Surveill. 2011, 16(18). pii: 19862.
32. Vazquez A., Sanchez-Seco M.P., Ruiz S., Molero F., Hernandez L., Moreno J., Magallanes A., Tejedor C.G., Tenorio A. Putative new lineage of West Nile virus. Spain Emerg. Infect. Dis. 2010, 16:549-552.
33. Wodak E., Richter S., Bagó Z., Revilla-Fernández S., Weissenböck H., Nowotny N., Winter P. Detection and molecular analysis of West Nile virus infections in birds of prey in the eastern part of Austria in 2008 and 2009. Vet. Microbiol. 2011, 149:358-366.
34. Zehender G., Ebranati E., Bernini F., Lo Presti A., Rezza G., Delogu M., Galli M., Ciccozzi M. Phylogeography and epidemiological history of West Nile virus genotype 1a in Europe and the Mediterranean basin. Infect. Genet. Evol. 2011, 11:646-653.
35. Zeller H.G., Schuffenecker I. West Nile virus: an overview of its spread in Europe and the Mediterranean basin in contrast to its spread in the Americas. Eur. J. Clin. Microbiol. Infect. Dis. 2004, 23:147-156.