Exiguobacterium himgiriensis sp. nov. A novel member of the genus Exiguobacterium, isolated from the Indian Himalayas

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 103, Issue 4, 2013, Pages 789-796

  Singh, Nitin Kumar ^b   Raichand, Revti ^b   Kaur, Ishwinder ^b   Kaur, Chandandeep ^b   Pareek, Siddhika ^b   Mayilraj, Shanmugam ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b A Constituent Laboratory of Council of Scientific and Industrial Research (CSIR)   (India)

Author keywords

16S rRNA gene sequence; DNA DNA hybridization; Fatty acid

Indexed keywords

CARDIOLIPIN; FATTY ACID; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM; BACTERIUM ISOLATE; CHEMOTAXONOMY; DNA BASE COMPOSITION; EXIGUOBACTERIUM AQUATICUM; EXIGUOBACTERIUM AURANTIACUM; EXIGUOBACTERIUM ESTUARII; EXIGUOBACTERIUM HIMGIRIENSIS; EXIGUOBACTERIUM MARINUM; EXIGUOBACTERIUM MEXICANUM; EXIGUOBACTERIUM PROFUNDUM; FATTY ACID ANALYSIS; LIPID COMPOSITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY;

BACILLALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; CLUSTER ANALYSIS; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; INDIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; PIGMENTS, BIOLOGICAL; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); EXIGUOBACTERIUM; EXIGUOBACTERIUM AESTUARII; EXIGUOBACTERIUM AURANTIACUM; EXIGUOBACTERIUM MARINUM; EXIGUOBACTERIUM MEXICANUM;

EID: 84876685308     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9861-5     Document Type: Article

References (29)

1. Bligh EG, Dyer WJ (1959) A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37:911-917
2. Chaturvedi P, Shivaji S (2006) Exiguobacterium indicum sp. nov. A psychrophilic bacterium from the Hamta glacier of the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 56:2765-2770 (Pubitemid 44970985)
3. Chaturvedi P, Prabahar V, Manorama R, Pindi PK, Bhadra B, Begum Z, Shivaji S (2008) Exiguobacterium soli sp. nov. A psychrophilic bacterium from the McMurdo dry valleys, Antarctica. Int J Syst Evol Microbiol 58:2447-2453
4. Collins MD, Jones D (1981) Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol Rev 45:316-354 (Pubitemid 11032202)
5. Collins MD, Lund BM, Farrow JAE, Schleifer KH (1983) Chemotaxonomic study of an alkalophilic bacterium Exiguobacterium aurantiacum gen. nov. sp. nov. J Gen Microbiol 129:2037-2042
6. Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London
7. Crapart S, Fardeau ML, Cayol JL, Thomas P, Sery C, Ollivier B, Combet-Blanc Y (2007) Exiguobacterium profundum sp. nov. A moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 57:287-292
8. Farrow JAE, Wallbanks S, Collins MD (1994) Phylogenetic interrelationships of round-spore forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia and Planococcus. Int J Syst Bacteriol 44:74-82 (Pubitemid 24023656)
9. Fruhling A, Schumann P, Hippe H, Straubler B, Stackebrandt E (2002) Exiguobacterium undae sp. nov. And E. Antarcticum sp. nov. Int J Syst Evol Microbiol 52:1171-1176 (Pubitemid 34846414)
10. Gee JM, Lund BM, Metcalf G, Peel JL (1980) Properties of a new group of alkalophilic bacteria. J Gen Microbiol 117:9-17 (Pubitemid 10099608)
11. Kim IJ, Lee MH, Jung SY, Song JJ, Oh TK, Yoon JH (2005) Exiguobacterium aestuarii sp. nov. And E. marinum sp. nov. isolated from tidal flat of the yellow sea in Korea. Int J Syst Evol Microbiol 55:885-889 (Pubitemid 40485087)
12. Kim O, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-721
13. Komagata K, Suzuki KI (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161-208
14. Lanyi B (1987) Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1-67
15. Lopez-Cortes A, Schumann P, Pukall R, Stackebrandt E (2006) Exiguobacterium mexicanum sp. nov. And E. Artemiae sp. nov. isolated from the brine shrimp artemia franciscana. Syst Appl Microbiol 29:183
16. Mandel M, Marmur J (1968) Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195-206
17. Mayilraj S, Saha PK, Suresh K, Saini HS (2006) Ornithinimicrobium kibberensesp. nov. isolated from the Himalayas, India. Int J Syst Evol Microbiol 56:1657-1661 (Pubitemid 44097179)
18. Murray RGE, Doetsch RN, Robinow F (1994) Determinative and cytological light microscopy. In: Gerhard P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, pp 21-41
19. Raichand R, Pareek S, Singh NK, Mayilraj S (2012) Exiguobacterium aquaticum sp. nov. A new member of the genus Exiguobacterium. Int J Syst Evol Microbiol 62:2150-2155
20. Rodrigues DF, Goris J, Vishnivetskaya T, Gilichinsky D, Thomashow MF, Tiedje JM (2006) Characterization of Exiguobacterium isolates from the siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Extremophiles 10:285-294 (Pubitemid 44325658)
21. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids.MIDI Technical note 101. Newark, DE: MIDI Inc
22. Schleifer KH (1985) Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123-156
23. Schleifer KH, Kandler O (1972) Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407-477
24. Smibert RM, Krieg NR (1994) Phenotypic characterization. In: Gerhardt P (ed) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, pp 607-654
25. Smith NR, Gordon RE, Clark FE (1952) Aerobic spore forming bacteria.US. Dep. Agric. Agriculture Monograph, no. 16
26. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: evolutionary genetics analysis using maximum likelihood, evolutionary distance maximum parsimony methods. Mol Biol Evol. doi: 28:2731-2739
27. Tourova TP, Antonov AS (1987) Identification of microorganisms by rapid DNA-DNA hybridization. Methods Microbiol 19:333-355
28. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray RGE et al (1987) International committee on systematic bacteriology. Report of the adhoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
29. Yumoto I, Hishinuma-Narisawa M, Hirota K, Shingyo T, Takebe F, Nodasaka Y, Matsuyama H, Hara I (2004) Exiguobacterium oxidotolerans sp. nov. A novel alkaliphile exhibiting high catalase activity. Int J Syst Evol Microbiol 54:2013-2017 (Pubitemid 39585381)