The EBI enzyme portal

Nucleic Acids Research

Volumn 41, Issue D1, 2013, Pages

  Alcántara, Rafael ^a   Onwubiko, Joseph ^a   Cao, Hong ^a,b   De Matos, Paula ^a   Cham, Jennifer A ^a   Jacobsen, Jules ^a   Holliday, Gemma L ^a,c   Fischer, Julia D ^a   Rahman, Syed Asad ^a   Jassal, Bijay ^a   Goujon, Mikael ^a   Rowland, Francis ^a   Velankar, Sameer ^a   López, Rodrigo ^a   Overington, John P ^a   Kleywegt, Gerard J ^a   Hermjakob, Henning ^a   O'Donovan, Claire ^a   Martín, María Jesús ^a   Thornton, Janet M ^a   Steinbeck, Christoph ^a   more..

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b European Research Council   (Belgium)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CATALYSIS; COMPUTER AIDED DESIGN; COMPUTER PROGRAM; DATA BASE; ENZYME MECHANISM; ENZYME STRUCTURE; PRIORITY JOURNAL; PROTEIN FUNCTION;

DATABASES, PROTEIN; DISEASE; ENZYMES; INTERNET; PROTEIN CONFORMATION; USER-COMPUTER INTERFACE;

EID: 84876587864     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1112     Document Type: Article

References (22)

1. Galperin, M.Y. and Fernández-Suárez, X.M. (2012) The 2012 nucleic acids research database issue and the online molecular biology database collection. Nucleic Acids Res., 40, D1-D8.
2. Guberman, J.M., Ai, J., Arnaiz, O., Baran, J., Blake, A., Baldock, R., Chelala, C., Croft, D., Cros, A., Cutts, R.J. et al. (2011) BioMart Central Portal: an open database network for the biological community. Database, 2011, bar041.
3. Musen, M.A., Noy, N.F., Shah, N.H., Whetzel, P.L., Chute, C.G., Story, M.A., Smith, B. and NCBO team (2012) The National Center for Biomedical Ontology. J. Am. Med. Inform. Assoc., 19, 190-195.
4. Barrett, T., Clark, K., Gevorgyan, R., Gorelenkov, V., Gribov, E., Karsch-Mizrachi, I., Kimelman, M., Pruitt, K.D., Resenchuk, S., Tatusova, T. et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res., 40, D57-D63.
5. Gifford, L.K., Carter, L.G., Gabanyi, M.J., Berman, H.M. and Adams, P.D. (2012) The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource. J. Struct. Funct. Genomics, 13, 57-62.
6. Love, C.G., Andongabo, A.E., Wang, J., Carion, P.W., Rawlings, C.J. and King, G.J. (2012) InterStoreDB: a generic integration resource for genetic and genomic data. J. Integr. Plant Biol., 54, 345-355.
7. Ringwald, M., Iyer, V., Mason, J.C., Stone, K.R., Tadepally, H.D., Kadin, J.A., Bult, C.J., Eppig, J.T., Oakley, D.J., Briois, S. et al. (2011) The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium. Nucleic Acids Res., 39, D849-D855.
8. The UniProt Consortium. (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 40, D71-D75.
9. Velankar, S., Alhroub, Y., Best, C., Caboche, S., Conroy, M.J., Dana, J.M., Fernandez Montecelo, M.A., van Ginkel, G., Golovin, A., Gore, S.P. et al. (2012) PDBe: Protein Data Bank in Europe. Nucleic Acids Res., 40, D445-D452.
10. Alcántara, R., Axelsen, K.B., Morgat, A., Belda, E., Coudert, E., Bridge, A., Cao, H., de Matos, P., Ennis, M., Turner, S. et al. (2012) Rhea - a manually curated resource of biochemical reactions. Nucleic Acids Res., 40, D754-D760.
11. Haw, R. and Stein, L. (2012) Using the reactome database. Curr. Protoc. Bioinformatics, Chapter 8, unit8.7.
12. Alcántara, R., Ast, V., Axelsen, K.B., Darsow, M., de Matos, P., Ennis, M., Morgat, A. and Degtyarenko, K. (2007) IntEnz. Molecular Biology Database Collection entry number 508. Nucleic Acids Res.
13. de Matos, P., Alcántara, R., Dekker, A., Ennis, M., Hastings, J., Haug, K., Spiteri, I., Turner, S. and Steinbeck, C. (2010) Chemical entities of biological interest: an update. Nucleic Acids Res., 38, D249-D254.
14. Gaulton, A., Bellis, L.J., Bento, A.P., Chambers, J., Davies, M., Hersey, A., Light, Y., McGlinchey, S., Michalovich, D., Al-Lazikani, B. et al. (2012) ChEMBL: a large-scale bioactivity database for chemical biology and drug discovery. Nucleic Acids Res., 40, D1100-D1107.
15. Holliday, G.L., Andreini, C., Fischer, J.D., Rahman, S.A., Almonacid, D.E., Williams, S.T. and Pearson, W.R. (2012) MACiE: exploring the diversity of biochemical reactions. Nucleic Acids Res., 40, D783-D789.
16. Malone, J., Holloway, E., Adamusiak, T., Kapushesky, M., Zheng, J., Kolesnikov, N., Zhukova, A., Brazma, A. and Parkinson, H. (2010) Modeling sample variables with an experimental factor ontology. Bioinformatics, 26, 1112-1118.
17. Pavelin, K., Cham, J.A., de Matos, P., Brooksbank, C., Cameron, G. and Steinbeck, C. (2012) Bioinformatics meets user-centred design: a perspective. PLoS Comput. Biol., 8, e1002554.
18. Valentin, F., Squizzato, S., Goujon, M., McWilliam, H., Paern, J. and Lopez, R. (2010) Fast and efficient searching of biological data resources - using EB-eye. Brief. Bioinform., 11, 375-384.
19. Scheer, M., Grote, A., Chang, A., Schomburg, I., Munaretto, C., Rother, M., Söhngen, C., Stelzer, M., Thiele, J. and Schomburg, D. (2011) BRENDA, the enzyme information system in 2011. Nucleic Acids Res., 39, 670-676.
20. Pruitt, J. and Adlin, T. (2006) The Persona Lifecycle: Keeping People in Mind Throughout Product Design. Morgan Kaufmann, San Francisco, CA.
21. Gray, D., Brown, S. and Macanufo, J. (2010) Game Storming: A Playbook for Innovators, Rulebreakers, and Changemakers. O'Reilly, Sebastopol, CA.
22. Snyder, C. (2003) Paper Prototyping: The Fast and Easy Way to Design and Refine User Interfaces. Morgan Kaufmann, San Francisco, CA.