메뉴 건너뛰기




Volumn 5, Issue 4, 2013, Pages 699-710

The evolutionary path to extraintestinal pathogenic, drug-resistant Escherichia coli is marked by drastic reduction in detectable recombination within the core genome

Author keywords

Diversity; E. coli; Population; Recombination

Indexed keywords

ESCHERICHIA COLI;

EID: 84876585874     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evt038     Document Type: Article
Times cited : (41)

References (49)
  • 1
    • 79961163061 scopus 로고    scopus 로고
    • Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India
    • Avasthi TS, et al. 2011. Genome of multidrug-resistant uropathogenic Escherichia coli strain NA114 from India. J Bacteriol. 193:4272-4273.
    • (2011) J Bacteriol. , vol.193 , pp. 4272-4273
    • Avasthi, T.S.1
  • 2
    • 84864026978 scopus 로고    scopus 로고
    • Phylogeny of shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans
    • Bono JL, et al. 2012. Phylogeny of shiga toxin-producing Escherichia coli O157 isolated from cattle and clinically ill humans. Mol Biol Evol. 29: 2047-2062.
    • (2012) Mol Biol Evol. , vol.29 , pp. 2047-2062
    • Bono, J.L.1
  • 3
    • 84858692213 scopus 로고    scopus 로고
    • Genomic and molecular epidemiology analysis of clinical Escherichia coli ST131 isolates suggests circulation of a genetically monomorphic but phenotypically heterogeneous ExPEC clone
    • Clark G, et al. 2012. Genomic and molecular epidemiology analysis of clinical Escherichia coli ST131 isolates suggests circulation of a genetically monomorphic but phenotypically heterogeneous ExPEC clone. J Antimicrob Chemother. 67:868-877.
    • (2012) J Antimicrob Chemother. , vol.67 , pp. 868-877
    • Clark, G.1
  • 4
    • 0033775633 scopus 로고    scopus 로고
    • Rapid and simple determination of the Escherichia coli phylogenetic group
    • Clermont O, Bonacorsi S, Bingen E. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol. 66: 4555-4558.
    • (2000) Appl Environ Microbiol. , vol.66 , pp. 4555-4558
    • Clermont, O.1    Bonacorsi, S.2    Bingen, E.3
  • 5
    • 84863596741 scopus 로고    scopus 로고
    • Population structure in the Neisseria, and the biological significance of fuzzy species
    • Corander J, Connor TR, O'Dwyer CA, Kroll JS, Hanage WP. 2012. Population structure in the Neisseria, and the biological significance of fuzzy species. J R Soc Interface. 9:1208-1215.
    • (2012) J R Soc Interface , vol.9 , pp. 1208-1215
    • Corander, J.1    Connor, T.R.2    O'dwyer, C.A.3    Kroll, J.S.4    Hanage, W.P.5
  • 6
    • 33747078134 scopus 로고    scopus 로고
    • Bayesian identification of admixture events using multi-locus molecular markers
    • Corander J,Marttinen P. 2006. Bayesian identification of admixture events using multi-locus molecular markers. Mol Ecol. 15:2833-2843.
    • (2006) Mol Ecol. , vol.15 , pp. 2833-2843
    • Corander, J.1    Marttinen, P.2
  • 7
    • 62349132559 scopus 로고    scopus 로고
    • Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
    • Corander J, Marttinen P, Sirén J, Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics 16:539.
    • (2008) BMC Bioinformatics , vol.16 , pp. 539
    • Corander, J.1    Marttinen, P.2    Sirén, J.3    Tang, J.4
  • 8
    • 80054685465 scopus 로고    scopus 로고
    • Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings
    • Croxall G, et al. 2011. Molecular epidemiology of extraintestinal pathogenic Escherichia coli isolates from a regional cohort of elderly patients highlights the prevalence of ST131 strains with increased antimicrobial resistance in both community and hospital care settings. J Antimicrob Chemother. 66:2501-2508.
    • (2011) J Antimicrob Chemother. , vol.66 , pp. 2501-2508
    • Croxall, G.1
  • 9
    • 73949118739 scopus 로고    scopus 로고
    • Molecular mechanisms of Escherichia coli pathogenicity
    • Croxen M, Finlay B. 2010. Molecular mechanisms of Escherichia coli pathogenicity. Nat Rev Microbiol. 8:26-38.
    • (2010) Nat Rev Microbiol. , vol.8 , pp. 26-38
    • Croxen, M.1    Finlay, B.2
  • 10
    • 84862290950 scopus 로고    scopus 로고
    • Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli
    • Didelot X,Meric G, Falush D, Darling AE. 2012. Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli. BMC Genomics 13:256.
    • (2012) BMC Genomics , vol.13 , pp. 256
    • Didelot, X.1    Meric, G.2    Falush, D.3    Darling, A.E.4
  • 12
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • Dykhuizen DE, Green L. 1991. Recombination in Escherichia coli and the definition of biological species. J Bacteriol. 173:7257-7268.
    • (1991) J Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.E.1    Green, L.2
  • 13
    • 70449635507 scopus 로고    scopus 로고
    • Transmission of an extended-spectrum-beta-lactamase- producing Escherichia coli (sequence type ST131) strain between a father and daughter resulting in septic shock and emphysematous pyelonephritis
    • Ender PT, et al. 2009. Transmission of an extended-spectrum-beta- lactamase- producing Escherichia coli (sequence type ST131) strain between a father and daughter resulting in septic shock and emphysematous pyelonephritis. J Clin Microbiol. 47:3780-3782.
    • (2009) J Clin Microbiol. , vol.47 , pp. 3780-3782
    • Ender, P.T.1
  • 14
    • 77952566709 scopus 로고    scopus 로고
    • Emergence of human pandemic O25:H4-ST131 CTXM- 15 extended-spectrum-beta- lactamase-producing Escherichia coli among companion animals
    • Ewers C, et al. 2010. Emergence of human pandemic O25:H4-ST131 CTXM- 15 extended-spectrum-beta-lactamase-producing Escherichia coli among companion animals. J Antimicrob Chemother. 65:651-660.
    • (2010) J Antimicrob Chemother. , vol.65 , pp. 651-660
    • Ewers, C.1
  • 15
    • 78650106014 scopus 로고    scopus 로고
    • The epidemiology of urinary tract infection
    • Foxman B. 2010. The epidemiology of urinary tract infection. Nat Rev Urol. 7:653-660.
    • (2010) Nat Rev Urol. , vol.7 , pp. 653-660
    • Foxman, B.1
  • 16
    • 67149119196 scopus 로고    scopus 로고
    • Hyper-recombination, diversity and antibiotic resistance in the pneumococcus
    • Hanage WP, Fraser C, Tang J, Connor T, Corander J. 2009. Hyper-recombination, diversity and antibiotic resistance in the pneumococcus. Science 324:1454-1457.
    • (2009) Science , vol.324 , pp. 1454-1457
    • Hanage, W.P.1    Fraser, C.2    Tang, J.3    Connor, T.4    Corander, J.5
  • 17
    • 84865683817 scopus 로고    scopus 로고
    • Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
    • Holt KE, et al. 2012. Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. Nat Genet. 44:1056-1059.
    • (2012) Nat Genet. , vol.44 , pp. 1056-1059
    • Holt, K.E.1
  • 18
    • 77954707306 scopus 로고    scopus 로고
    • Escherichia coli type ST131 as the major cause of serious multidrugresistant Escherichia coli infections in the United States
    • Johnson JR, Johnston B, Clabots C, Kuskowski MA, Castanheira M. 2010. Escherichia coli type ST131 as the major cause of serious multidrugresistant Escherichia coli infections in the United States. Clin Infect Dis. 51:286-294.
    • (2010) Clin Infect Dis. , vol.51 , pp. 286-294
    • Johnson, J.R.1    Johnston, B.2    Clabots, C.3    Kuskowski, M.A.4    Castanheira, M.5
  • 19
    • 84859962147 scopus 로고    scopus 로고
    • Virulence of Escherichia coli clinical isolates in a murine sepsis model in relation to sequence type ST131 status, fluoroquinolone resistance, and virulence genotype
    • Johnson JR, Porter SB, Zhanel G, Kuskowski MA, Denamur E. 2012. Virulence of Escherichia coli clinical isolates in a murine sepsis model in relation to sequence type ST131 status, fluoroquinolone resistance, and virulence genotype. Infect Immun. 80:1554-1562.
    • (2012) Infect Immun. , vol.80 , pp. 1554-1562
    • Johnson, J.R.1    Porter, S.B.2    Zhanel, G.3    Kuskowski, M.A.4    Denamur, E.5
  • 21
    • 56649108214 scopus 로고    scopus 로고
    • UK epidemic Escherichia coli strains A-E, with CTX-M- 15 b-lactamase, all belong to the international O25:H4-ST131 clone
    • Lau SH, et al. 2008. UK epidemic Escherichia coli strains A-E, with CTX-M- 15 b-lactamase, all belong to the international O25:H4-ST131 clone. J Antimicrob Chemother. 62:1241-1244.
    • (2008) J Antimicrob Chemother. , vol.62 , pp. 1241-1244
    • Lau, S.H.1
  • 22
    • 66649094404 scopus 로고    scopus 로고
    • A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
    • Leopold SR, et al. 2009. A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc Natl Acad Sci U S A. 106: 8713-8718.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 8713-8718
    • Leopold, S.R.1
  • 23
    • 66149083657 scopus 로고    scopus 로고
    • Genomic islands of uropathogenic Escherichia coli contribute to virulence
    • Lloyd AL, Henderson TA, Vigil PD, Mobley HLT. 2009. Genomic islands of uropathogenic Escherichia coli contribute to virulence. J Bacteriol. 191: 3469-3481.
    • (2009) J Bacteriol. , vol.191 , pp. 3469-3481
    • Lloyd, A.L.1    Henderson, T.A.2    Vigil, P.D.3    Mobley, H.L.T.4
  • 24
    • 34247601641 scopus 로고    scopus 로고
    • Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
    • Lloyd AL, Rasko DA, Mobley HLT. 2007. Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. J Bacteriol. 189:3532-3546.
    • (2007) J Bacteriol. , vol.189 , pp. 3532-3546
    • Lloyd, A.L.1    Rasko, D.A.2    Mobley, H.L.T.3
  • 25
    • 78149470831 scopus 로고    scopus 로고
    • Comparison of 61 sequenced Escherichia coli genomes
    • Lukjancenko O, Wassenaar TM, Ussery DW. 2010. Comparison of 61 sequenced Escherichia coli genomes. Microb Ecol. 60:708-720.
    • (2010) Microb Ecol. , vol.60 , pp. 708-720
    • Lukjancenko, O.1    Wassenaar, T.M.2    Ussery, D.W.3
  • 26
    • 84855261123 scopus 로고    scopus 로고
    • Detection of recombination events in bacterial genomes from large population samples
    • Marttinen P, et al. 2012. Detection of recombination events in bacterial genomes from large population samples. Nucleic Acid Res. 40:e6.
    • (2012) Nucleic Acid Res. , vol.40
    • Marttinen, P.1
  • 27
    • 0037371268 scopus 로고    scopus 로고
    • Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host
    • Naylor SW, et al. 2003. Lymphoid follicle-dense mucosa at the terminal rectum is the principal site of colonization of enterohemorrhagic Escherichia coli O157:H7 in the bovine host. Infect Immun. 71: 1505-1512.
    • (2003) Infect Immun. , vol.71 , pp. 1505-1512
    • Naylor, S.W.1
  • 28
    • 38349129083 scopus 로고    scopus 로고
    • Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15
    • Nicolas-Chanoine M, et al. 2008. Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15. J Antimicrob Chemother. 61:273-281.
    • (2008) J Antimicrob Chemother. , vol.61 , pp. 273-281
    • Nicolas-Chanoine, M.1
  • 29
    • 84867563084 scopus 로고    scopus 로고
    • Enteroaggregative Escherichia coli O78:H10 - The cause of an outbreak of urinary tract infection
    • Olesen B, et al. 2012. Enteroaggregative Escherichia coli O78:H10-the cause of an outbreak of urinary tract infection. J Clin Microbiol. 50: 3703-3711.
    • (2012) J Clin Microbiol. , vol.50 , pp. 3703-3711
    • Olesen, B.1
  • 30
    • 76749123412 scopus 로고    scopus 로고
    • Molecular epidemiology of Escherichia coli producing CTX-M b-lactamases: The worldwide emergence of clone ST131 O25:H4
    • Peirano G, Pitout JDD. 2010. Molecular epidemiology of Escherichia coli producing CTX-M b-lactamases: the worldwide emergence of clone ST131 O25:H4. Int J Antimicrob Agents. 35:316-321.
    • (2010) Int J Antimicrob Agents , vol.35 , pp. 316-321
    • Peirano, G.1    Pitout, J.D.D.2
  • 31
    • 67049173052 scopus 로고    scopus 로고
    • Molecular characteristics of travel-related extended-spectrum-b- lactamase- producing Escherichia coli isolates from the Calgary health region
    • Pitout JDD, Campbell L, Church DL, Gregson DB, Laupland KB. 2009. Molecular characteristics of travel-related extended-spectrum-b-lactamase- producing Escherichia coli isolates from the Calgary health region. Antimicrob Agents Chemother. 53:2539-2543.
    • (2009) Antimicrob Agents Chemother. , vol.53 , pp. 2539-2543
    • Pitout, J.D.D.1    Campbell, L.2    Church, D.L.3    Gregson, D.B.4    Laupland, K.B.5
  • 32
    • 79960292960 scopus 로고    scopus 로고
    • Commonality among fluoroquinolone-resistant sequence type ST131 extraintestinal Escherichia coli isolates from humans and companion animals in Australia
    • Platell JL, et al. 2011. Commonality among fluoroquinolone-resistant sequence type ST131 extraintestinal Escherichia coli isolates from humans and companion animals in Australia. Antimicrob Agents Chemother. 8:3782-3787.
    • (2011) Antimicrob Agents Chemother. , vol.8 , pp. 3782-3787
    • Platell, J.L.1
  • 33
    • 80052544945 scopus 로고    scopus 로고
    • Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods
    • Platell JL, Johnson JR, Cobbold RN, Trott DJ. 2011. Multidrug-resistant extraintestinal pathogenic Escherichia coli of sequence type ST131 in animals and foods. Vet Microbiol. 153:99-108.
    • (2011) Vet Microbiol. , vol.153 , pp. 99-108
    • Platell, J.L.1    Johnson, J.R.2    Cobbold, R.N.3    Trott, D.J.4
  • 34
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: Computing large minimum evolution trees with profiles instead of a distancematrix
    • Price MN, Dehal PS, Arkin AP. 2009. FastTree: computing large minimum evolution trees with profiles instead of a distancematrix.Mol Biol Evol. 26:1641-1650.
    • (2009) Mol Biol Evol. , vol.26 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 35
    • 53849104729 scopus 로고    scopus 로고
    • The pangenome structure of Escherichia coli: Comparative genomic analysis of Escherichia coli commensal and pathogenic isolates
    • Rasko DA, et al. 2008. The pangenome structure of Escherichia coli: comparative genomic analysis of Escherichia coli commensal and pathogenic isolates. J Bacteriol. 190:6881-6893.
    • (2008) J Bacteriol. , vol.190 , pp. 6881-6893
    • Rasko, D.A.1
  • 36
    • 80052150179 scopus 로고    scopus 로고
    • Origins of the Escherichia coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
    • Rasko DA, et al. 2011. Origins of the Escherichia coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. New Engl JMed. 365:709-717.
    • (2011) New Engl JMed. , vol.365 , pp. 709-717
    • Rasko, D.A.1
  • 37
    • 78650339210 scopus 로고    scopus 로고
    • Escherichia coli O25b-ST131: A pandemic, multiresistant, community-associated strain
    • Rogers BA, Sidjabat HE, Paterson DL. 2011. Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain. J Antimicrob Chemother. 66:1-14.
    • (2011) J Antimicrob Chemother. , vol.66 , pp. 1-14
    • Rogers, B.A.1    Sidjabat, H.E.2    Paterson, D.L.3
  • 38
    • 69049102137 scopus 로고    scopus 로고
    • Nursing homes as a reservoir of extended-spectrum b-lactamase (ESBL)-producing ciprofloxacin-resistant Escherichia coli
    • Rooney PJ, et al. 2009. Nursing homes as a reservoir of extended-spectrum b-lactamase (ESBL)-producing ciprofloxacin-resistant Escherichia coli. J Antimicrob Chemother. 64:635-641.
    • (2009) J Antimicrob Chemother. , vol.64 , pp. 635-641
    • Rooney, P.J.1
  • 39
    • 79957806346 scopus 로고    scopus 로고
    • Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity
    • Sahl JW, et al. 2011. Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity. BMC Genomics 12: 291.
    • (2011) BMC Genomics , vol.12 , pp. 291
    • Sahl, J.W.1
  • 40
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 75:7537-7541.
    • (2009) Appl Environ Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 41
    • 14644397888 scopus 로고    scopus 로고
    • RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
    • Stamatakis A, Ludwig T, Meier H. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21:456.
    • (2005) Bioinformatics , vol.21 , pp. 456
    • Stamatakis, A.1    Ludwig, T.2    Meier, H.3
  • 42
    • 70049114381 scopus 로고    scopus 로고
    • Identifying currents in the gene pool for bacterial populations using an integrative approach
    • Tang J, Hanage WP, Fraser C, Corander J. 2009. Identifying currents in the gene pool for bacterial populations using an integrative approach. PLoS Comp Biol. 5:e1000455.
    • (2009) PLoS Comp Biol. , vol.5
    • Tang, J.1    Hanage, W.P.2    Fraser, C.3    Corander, J.4
  • 43
    • 75749094779 scopus 로고    scopus 로고
    • Complete genome sequence of the wild-type commensal Escherichia coli Strain SE15, belonging to phylogenetic group B2
    • Toh H, et al. 2010. Complete genome sequence of the wild-type commensal Escherichia coli Strain SE15, belonging to phylogenetic group B2. J Bacteriol. 192:1165-1166.
    • (2010) J Bacteriol. , vol.192 , pp. 1165-1166
    • Toh, H.1
  • 44
    • 80055045142 scopus 로고    scopus 로고
    • Insights into a multidrug-resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: Genome analysis and virulence mechanisms
    • Totsika M, et al. 2011. Insights into a multidrug-resistant Escherichia coli pathogen of the globally disseminated ST131 lineage: genome analysis and virulence mechanisms. PLoS One 6:e26578.
    • (2011) PLoS One , vol.6
    • Totsika, M.1
  • 45
    • 59249089471 scopus 로고    scopus 로고
    • Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
    • Touchon M, et al. 2009. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet. 5: e1000344.
    • (2009) PLoS Genet. , vol.5
    • Touchon, M.1
  • 46
    • 73949121686 scopus 로고    scopus 로고
    • Food reservoir for Escherichia coli causing urinary tract infections
    • Vincent C, et al. 2010. Food reservoir for Escherichia coli causing urinary tract infections. Emerg Infect Dis. 16:88-95.
    • (2010) Emerg Infect Dis. , vol.16 , pp. 88-95
    • Vincent, C.1
  • 47
    • 84865798417 scopus 로고    scopus 로고
    • Restricted gene flow among hospital subpopulations of Enterococcus faecium
    • Willems RJ, et al. 2012. Restricted gene flow among hospital subpopulations of Enterococcus faecium. MBio 3:e00151-12.
    • (2012) MBio , vol.3
    • Willems, R.J.1
  • 48
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: An evolutionary perspective
    • Wirth T, et al. 2006. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol. 60:1136-1151.
    • (2006) Mol Microbiol. , vol.60 , pp. 1136-1151
    • Wirth, T.1
  • 49
    • 78651416795 scopus 로고    scopus 로고
    • BlaCTX-M-carrying Escherichia coli of the O25b ST131 clonal group have emerged in China
    • Zong Z, Yu R. 2011. blaCTX-M-carrying Escherichia coli of the O25b ST131 clonal group have emerged in China. Diagn Microbiol Infect Dis. 69: 228-231.
    • (2011) Diagn Microbiol Infect Dis. , vol.69 , pp. 228-231
    • Zong, Z.1    Yu, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.