-
2
-
-
79958177813
-
The past, present, and future of single neuron reconstruction
-
Svoboda K, (2011) The past, present, and future of single neuron reconstruction. Neuroinformatics 9: 97-98.
-
(2011)
Neuroinformatics
, vol.9
, pp. 97-98
-
-
Svoboda, K.1
-
4
-
-
79953044014
-
Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain
-
Zhang B, Li AA, Yang ZQ, Wu JP, Luo QM, et al. (2011) Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain. J. Neurosci. Methods 197(1): 1-5.
-
(2011)
J. Neurosci. Methods
, vol.197
, Issue.1
, pp. 1-5
-
-
Zhang, B.1
Li, A.A.2
Yang, Z.Q.3
Wu, J.P.4
Luo, Q.M.5
-
5
-
-
77955514553
-
Mapping of fluorescent protein-expressing neurons and axon pathways in adult and developing Thy1-eYFP-H transgenic mice
-
Porrero C, Rubio-Garrido P, Avendano C, Clasca F, (2010) Mapping of fluorescent protein-expressing neurons and axon pathways in adult and developing Thy1-eYFP-H transgenic mice. Brain Res 1345: 59-72.
-
(2010)
Brain Res
, vol.1345
, pp. 59-72
-
-
Porrero, C.1
Rubio-Garrido, P.2
Avendano, C.3
Clasca, F.4
-
6
-
-
78649694219
-
Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain
-
Li AA, Gong H, Zhang B, Wang QD, Yan C, et al. (2010) Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain. Science 330(6009): 1404-1408.
-
(2010)
Science
, vol.330
, Issue.6009
, pp. 1404-1408
-
-
Li, A.A.1
Gong, H.2
Zhang, B.3
Wang, Q.D.4
Yan, C.5
-
7
-
-
46749092090
-
Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain
-
Mayerich D, Abbott L, McCormick B, (2008) Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain. J. Microsc 231: 134-143.
-
(2008)
J. Microsc
, vol.231
, pp. 134-143
-
-
Mayerich, D.1
Abbott, L.2
McCormick, B.3
-
8
-
-
50549104043
-
Bioimage informatics: a new area of engineering biology
-
Peng H, (2008) Bioimage informatics: a new area of engineering biology. Bioinformatics 24: 1827-1836.
-
(2008)
Bioinformatics
, vol.24
, pp. 1827-1836
-
-
Peng, H.1
-
9
-
-
0347928807
-
An algorithm for neurite outgrowth reconstruction
-
Weaver CM, Pinezich JD, Lindquist WB, Vazquez ME, (2003) An algorithm for neurite outgrowth reconstruction. J. Neurosci. Methods 124: 197-205.
-
(2003)
J. Neurosci. Methods
, vol.124
, pp. 197-205
-
-
Weaver, C.M.1
Pinezich, J.D.2
Lindquist, W.B.3
Vazquez, M.E.4
-
10
-
-
2942590533
-
Quantitation of neurite growth parameters in explant cultures using a new image processing program
-
Shah A, Fischer C, Knapp CF, Sisken BF, (2004) Quantitation of neurite growth parameters in explant cultures using a new image processing program. J. Neurosci. Methods 136: 123-131.
-
(2004)
J. Neurosci. Methods
, vol.136
, pp. 123-131
-
-
Shah, A.1
Fischer, C.2
Knapp, C.F.3
Sisken, B.F.4
-
11
-
-
84900176742
-
Automated Three-Dimensional Image Analysis Methods for Confocal Microscopy
-
Berlin Heidelberg: Springer-Verlag
-
Roysam B, Lin G, Abdul-Karim MA, Al-Kofahi O, Al-Kofahi K, et al. (2005) Automated Three-Dimensional Image Analysis Methods for Confocal Microscopy. In: Handbook of biological confocal microscopy. Berlin Heidelberg: Springer-Verlag. 316-337.
-
(2005)
Handbook of biological confocal microscopy
, pp. 316-337
-
-
Roysam, B.1
Lin, G.2
Abdul-Karim, M.A.3
Al-Kofahi, O.4
Al-Kofahi, K.5
-
12
-
-
3042547731
-
Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections
-
Wählby C, Sintorn IM, Erlandsson F, Borgefors G, Bengtsson E, (2004) Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections. J. Microsc 215: 67-76.
-
(2004)
J. Microsc
, vol.215
, pp. 67-76
-
-
Wählby, C.1
Sintorn, I.M.2
Erlandsson, F.3
Borgefors, G.4
Bengtsson, E.5
-
13
-
-
26444456033
-
Segmenting and tracking fluoresent cells in dynamic 3D microscopy with coupled active surfaces
-
Dufour A, Shinin V, Tajbakhsh S, Guillen-Aghion N, Olivo-Marin JC, et al. (2005) Segmenting and tracking fluoresent cells in dynamic 3D microscopy with coupled active surfaces. IEEE Trans. Image Process 14: 1396-1410.
-
(2005)
IEEE Trans. Image Process
, vol.14
, pp. 1396-1410
-
-
Dufour, A.1
Shinin, V.2
Tajbakhsh, S.3
Guillen-Aghion, N.4
Olivo-Marin, J.C.5
-
14
-
-
35348992774
-
Detection of Blob Objects in Microscopic Zebrafish Images Based on Gradient Vector Diffusion
-
Li G, Liu TM, Nie JX, Guo L, Malicki J, et al. (2007) Detection of Blob Objects in Microscopic Zebrafish Images Based on Gradient Vector Diffusion. Cytometry A 71(10): 835-845.
-
(2007)
Cytometry A
, vol.71
, Issue.10
, pp. 835-845
-
-
Li, G.1
Liu, T.M.2
Nie, J.X.3
Guo, L.4
Malicki, J.5
-
15
-
-
56149108974
-
An Automated Method for Cell Detection in Zebrafish
-
Liu TM, Li G, Nie JX, Tarokh A, Zhou XB, et al. (2008) An Automated Method for Cell Detection in Zebrafish. Neuroinformatics 6: 5-21.
-
(2008)
Neuroinformatics
, vol.6
, pp. 5-21
-
-
Liu, T.M.1
Li, G.2
Nie, J.X.3
Tarokh, A.4
Zhou, X.B.5
-
16
-
-
77949777061
-
Evolving generalized Voronoi diagrams for accurate cellular image segmentation
-
Yu W, Lee HK, Hariharan S, Bu W, Ahmed S, (2010) Evolving generalized Voronoi diagrams for accurate cellular image segmentation. Cytom. Part A 77(4): 379-386.
-
(2010)
Cytom. Part A
, vol.77
, Issue.4
, pp. 379-386
-
-
Yu, W.1
Lee, H.K.2
Hariharan, S.3
Bu, W.4
Ahmed, S.5
-
17
-
-
84860663622
-
Automatic Extraction of Nuclei Centroids of Mouse Embryonic Cells from Fluorescence Microscopy Images
-
doi 10.1371/journal.pone.0035550
-
Bashar MK, Komatsu K, Fujimori T, Kobayashi TJ, (2012) Automatic Extraction of Nuclei Centroids of Mouse Embryonic Cells from Fluorescence Microscopy Images. PLoS One 7(5): e35550 doi:10.1371/journal.pone.0035550.
-
(2012)
PLoS One
, vol.7
, Issue.5
-
-
Bashar, M.K.1
Komatsu, K.2
Fujimori, T.3
Kobayashi, T.J.4
-
18
-
-
35349006437
-
Automated Analysis of Neurite Branching in Cultured Cortical Neurons Using HCA-Vision
-
Vallotton P, Lagerstrom R, Sun C, Buckley M, Wang D, et al. (2007) Automated Analysis of Neurite Branching in Cultured Cortical Neurons Using HCA-Vision. Cytom. Part A 71(10): 889-895.
-
(2007)
Cytom. Part A
, vol.71
, Issue.10
, pp. 889-895
-
-
Vallotton, P.1
Lagerstrom, R.2
Sun, C.3
Buckley, M.4
Wang, D.5
-
19
-
-
77950245872
-
Improved automatic detection and segmentation of cell nuclei in histopathology images
-
Al-Kofahi Y, Lassoued W, Lee W, Roysam B, (2010) Improved automatic detection and segmentation of cell nuclei in histopathology images. IEEE Trans. Biomed. Eng 57: 841-852.
-
(2010)
IEEE Trans. Biomed. Eng
, vol.57
, pp. 841-852
-
-
Al-Kofahi, Y.1
Lassoued, W.2
Lee, W.3
Roysam, B.4
-
20
-
-
84863170133
-
Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set
-
Qi X, Xing F, Foran D, Yang L, (2012) Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans Biomed Eng 59(3): 754-765.
-
(2012)
IEEE Trans Biomed Eng
, vol.59
, Issue.3
, pp. 754-765
-
-
Qi, X.1
Xing, F.2
Foran, D.3
Yang, L.4
-
21
-
-
0042739762
-
Automated Three-Dimensional Tracing of Neurons in Confocal and Brightfield Images
-
He WY, Hamilton TA, Cohen AR, Holmes TJ, Pace C, et al. (2003) Automated Three-Dimensional Tracing of Neurons in Confocal and Brightfield Images. Microsc. Microanal 9: 296-310.
-
(2003)
Microsc. Microanal
, vol.9
, pp. 296-310
-
-
He, W.Y.1
Hamilton, T.A.2
Cohen, A.R.3
Holmes, T.J.4
Pace, C.5
-
22
-
-
0036591381
-
Rapid automated three-dimensional tracing of neurons from confocal image stacks
-
Al-Kofahi KA, Lasek S, Szarowski DH, Pace CJ, Nagy G, et al. (2003) Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Trans. Information Technol. Biomed 6: 171-187.
-
(2003)
IEEE Trans. Information Technol. Biomed
, vol.6
, pp. 171-187
-
-
Al-Kofahi, K.A.1
Lasek, S.2
Szarowski, D.H.3
Pace, C.J.4
Nagy, G.5
-
23
-
-
0041839665
-
Median based robust algorithms for tracing neurons from noisy confocal microscope images
-
Al-Kofahi K, Can A, Lasek S, Szarowski D, Dowell N, et al. (2003) Median based robust algorithms for tracing neurons from noisy confocal microscope images. IEEE Trans. Inf. Technol. Biomed 7: 302-317.
-
(2003)
IEEE Trans. Inf. Technol. Biomed
, vol.7
, pp. 302-317
-
-
Al-Kofahi, K.1
Can, A.2
Lasek, S.3
Szarowski, D.4
Dowell, N.5
-
24
-
-
37849043878
-
Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images
-
Al-Kofahi Y, Dowell-Mesfin D, Pace C, Shain W, Turner JN, et al. (2008) Improved detection of branching points in algorithms for automated neuron tracing from 3D confocal images. Cytom. Part A 73(1): 36-43.
-
(2008)
Cytom. Part A
, vol.73
, Issue.1
, pp. 36-43
-
-
Al-Kofahi, Y.1
Dowell-Mesfin, D.2
Pace, C.3
Shain, W.4
Turner, J.N.5
-
25
-
-
28844498390
-
New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales
-
Wearne SL, Rodriguez A, Ehlenberger DB, Rocher AB, Henderson SC, et al. (2005) New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales. Neuroscience 136: 661-680.
-
(2005)
Neuroscience
, vol.136
, pp. 661-680
-
-
Wearne, S.L.1
Rodriguez, A.2
Ehlenberger, D.B.3
Rocher, A.B.4
Henderson, S.C.5
-
26
-
-
34248652917
-
Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser scanning microscopy images
-
Rodriguez A, Ehlenberger DB, Hof PR, Wearne SL, (2006) Rayburst sampling, an algorithm for automated three-dimensional shape analysis from laser scanning microscopy images. Nat. Protoc 1: 2152-2161.
-
(2006)
Nat. Protoc
, vol.1
, pp. 2152-2161
-
-
Rodriguez, A.1
Ehlenberger, D.B.2
Hof, P.R.3
Wearne, S.L.4
-
27
-
-
44349154735
-
Automated three-dimensional detection and shape classification of dendritic spines from fluorescence microscopy images
-
Rodriquez A, Ehlenberger DB, Dickstein DL, Hof PR, Wearne SL, (2008) Automated three-dimensional detection and shape classification of dendritic spines from fluorescence microscopy images. PLoS One 3: e1997.
-
(2008)
PLoS One
, vol.3
-
-
Rodriquez, A.1
Ehlenberger, D.B.2
Dickstein, D.L.3
Hof, P.R.4
Wearne, S.L.5
-
28
-
-
79952030674
-
Dendritic morphology and spine density is not altered in motor cortex and dentate granular cells in mice lacking the ganglioside biosyn-thetic gene B4galnt1-a quantitative Golgi cox study
-
Dobrović B, Curić G, Petanjek Z, Heffer M, (2011) Dendritic morphology and spine density is not altered in motor cortex and dentate granular cells in mice lacking the ganglioside biosyn-thetic gene B4galnt1-a quantitative Golgi cox study. Coll Antropol (Suppl 1)pp. 25-30.
-
(2011)
Coll Antropol
, pp. 25-30
-
-
Dobrović, B.1
Curić, G.2
Petanjek, Z.3
Heffer, M.4
-
29
-
-
84868233077
-
Quantitative study on the hygroscopic expansion of spurr resin to obtain a high-resolution atlas of the mouse brain, Exp
-
Wang QD, Li AA, Gong H, Xu DL, Luo QM, (2012) Quantitative study on the hygroscopic expansion of spurr resin to obtain a high-resolution atlas of the mouse brain, Exp. Biol. Med 237: 1134-1141.
-
(2012)
Biol. Med
, vol.237
, pp. 1134-1141
-
-
Wang, Q.D.1
Li, A.A.2
Gong, H.3
Xu, D.L.4
Luo, Q.M.5
-
30
-
-
0018306059
-
A threshold selection method from gray-level histograms
-
Otsu N, (1979) A threshold selection method from gray-level histograms. IEEE Trans. on Sys., Man, and Cybernetics 9: 62-66.
-
(1979)
IEEE Trans. On Sys., Man, and Cybernetics
, vol.9
, pp. 62-66
-
-
Otsu, N.1
-
31
-
-
0012614532
-
Performance measures for information extraction
-
Herndon, VA
-
Makhoul J, Kubala F, Schwartz R, Weischedel R (1999) Performance measures for information extraction. In: Proceedings of DARPA Broadcast NewsWorkshop, Herndon, VA. 249-252.
-
(1999)
Proceedings of DARPA Broadcast NewsWorkshop
, pp. 249-252
-
-
Makhoul, J.1
Kubala, F.2
Schwartz, R.3
Weischedel, R.4
-
33
-
-
35948953980
-
3D cell nuclei segmentation based on gradient flow tracking
-
Li G, Liu TM, Tarokh A, Nie JX, Guo L, et al. (2007) 3D cell nuclei segmentation based on gradient flow tracking. BMC Cell Biol 8: 40.
-
(2007)
BMC Cell Biol
, vol.8
, pp. 40
-
-
Li, G.1
Liu, T.M.2
Tarokh, A.3
Nie, J.X.4
Guo, L.5
-
34
-
-
77954289614
-
Neuron tracing in perspective
-
Meijering E, (2010) Neuron tracing in perspective. Cytom. Part A 77(7): 693-704.
-
(2010)
Cytom. Part A
, vol.77
, Issue.7
, pp. 693-704
-
-
Meijering, E.1
|