-
1
-
-
60849116153
-
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology
-
Tseng, T.T., Tyler, B.M. and Setubal, J.C. (2009) Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology. BMC Microbiol., 9(Suppl. 1), S2.
-
(2009)
BMC Microbiol.
, vol.9
, Issue.SUPPL. 1
-
-
Tseng, T.T.1
Tyler, B.M.2
Setubal, J.C.3
-
2
-
-
1842456892
-
The versatile bacterial type IV secretion systems
-
Cascales, E. and Christie, P.J. (2003) The versatile bacterial type IV secretion systems. Nat. Rev. Microbiol., 1, 137-149.
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 137-149
-
-
Cascales, E.1
Christie, P.J.2
-
3
-
-
70349277187
-
The structural biology of type IV secretion systems
-
Fronzes, R., Christie, P.J. and Waksman, G. (2009) The structural biology of type IV secretion systems. Nat. Rev. Microbiol., 7, 703-714.
-
(2009)
Nat. Rev. Microbiol.
, vol.7
, pp. 703-714
-
-
Fronzes, R.1
Christie, P.J.2
Waksman, G.3
-
4
-
-
71449116162
-
Biological diversity of prokaryotic type IV secretion systems
-
Alvarez-Martinez, C.E. and Christie, P.J. (2009) Biological diversity of prokaryotic type IV secretion systems. Microbiol. Mol. Biol. Rev., 73, 775-808.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 775-808
-
-
Alvarez-Martinez, C.E.1
Christie, P.J.2
-
5
-
-
55749108735
-
Type IV secretion systems: Tools of bacterial horizontal gene transfer and virulence
-
Juhas, M., Crook, D.W. and Hood, D.W. (2008) Type IV secretion systems: tools of bacterial horizontal gene transfer and virulence. Cell Microbiol., 10, 2377-2386.
-
(2008)
Cell Microbiol.
, vol.10
, pp. 2377-2386
-
-
Juhas, M.1
Crook, D.W.2
Hood, D.W.3
-
6
-
-
77957976940
-
Mobility of plasmids
-
Smillie, C., Garcillan-Barcia, M.P., Francia, M.V., Rocha, E.P. and de la Cruz, F. (2010) Mobility of plasmids. Microbiol. Mol. Biol. Rev., 74, 434-452.
-
(2010)
Microbiol. Mol. Biol. Rev.
, vol.74
, pp. 434-452
-
-
Smillie, C.1
Garcillan-Barcia, M.P.2
Francia, M.V.3
Rocha, E.P.4
De La Cruz, F.5
-
7
-
-
77954761569
-
Integrative and conjugative elements: Mosaic mobile genetic elements enabling dynamic lateral gene flow
-
Wozniak, R.A. and Waldor, M.K. (2010) Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat. Rev. Microbiol., 8, 552-563.
-
(2010)
Nat. Rev. Microbiol.
, vol.8
, pp. 552-563
-
-
Wozniak, R.A.1
Waldor, M.K.2
-
8
-
-
77957116092
-
Type IV secretion systems: Versatility and diversity in function
-
Wallden, K., Rivera-Calzada, A. and Waksman, G. (2010) Type IV secretion systems: versatility and diversity in function. Cell Microbiol., 12, 1203-1212.
-
(2010)
Cell Microbiol.
, vol.12
, pp. 1203-1212
-
-
Wallden, K.1
Rivera-Calzada, A.2
Waksman, G.3
-
9
-
-
0038308165
-
F factor conjugation is a true type IV secretion system
-
Lawley, T.D., Klimke, W.A., Gubbins, M.J. and Frost, L.S. (2003) F factor conjugation is a true type IV secretion system. FEMS Microbiol. Lett., 224, 1-15.
-
(2003)
FEMS Microbiol. Lett.
, vol.224
, pp. 1-15
-
-
Lawley, T.D.1
Klimke, W.A.2
Gubbins, M.J.3
Frost, L.S.4
-
10
-
-
27144463959
-
Biogenesis, architecture, and function of bacterial type IV secretion systems
-
Christie, P.J., Atmakuri, K., Krishnamoorthy, V., Jakubowski, S. and Cascales, E. (2005) Biogenesis, architecture, and function of bacterial type IV secretion systems. Annu. Rev. Microbiol., 59, 451-485.
-
(2005)
Annu. Rev. Microbiol.
, vol.59
, pp. 451-485
-
-
Christie, P.J.1
Atmakuri, K.2
Krishnamoorthy, V.3
Jakubowski, S.4
Cascales, E.5
-
11
-
-
0037905748
-
Conjugative plasmid transfer in gram-positive bacteria
-
table of contents
-
Grohmann, E., Muth, G. and Espinosa, M. (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol. Mol. Biol. Rev., 67, 277-301, table of contents.
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 277-301
-
-
Grohmann, E.1
Muth, G.2
Espinosa, M.3
-
12
-
-
80052333445
-
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
-
Guglielmini, J., Quintais, L., Garcillan-Barcia, M.P., de la Cruz, F. and Rocha, E.P. (2011) The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation. PLoS Genet., 7, e1002222.
-
(2011)
PLoS Genet.
, vol.7
-
-
Guglielmini, J.1
Quintais, L.2
Garcillan-Barcia, M.P.3
De La Cruz, F.4
Rocha, E.P.5
-
13
-
-
70049110355
-
Genome-scale identification of Legionella pneumophila effectors using a machine learning approach
-
Burstein, D., Zusman, T., Degtyar, E., Viner, R., Segal, G. and Pupko, T. (2009) Genome-scale identification of Legionella pneumophila effectors using a machine learning approach. PLoS Pathog., 5, e1000508.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Burstein, D.1
Zusman, T.2
Degtyar, E.3
Viner, R.4
Segal, G.5
Pupko, T.6
-
14
-
-
84861904854
-
VFDB 2012 update: Toward the genetic diversity and molecular evolution of bacterial virulence factors
-
Chen, L., Xiong, Z., Sun, L., Yang, J. and Jin, Q. (2012) VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res., 40, D641-D645.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Chen, L.1
Xiong, Z.2
Sun, L.3
Yang, J.4
Jin, Q.5
-
15
-
-
84864667438
-
AtlasT4SS: A curated database for type IV secretion systems
-
Souza, R.C., Quispe Saji, G.D., Costa, M.O., Netto, D.S., Lima, N.C., Klein, C.C., Vasconcelos, A.T. and Nicolas, M.F. (2012) AtlasT4SS: a curated database for type IV secretion systems. BMC Microbiol., 12, 172.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 172
-
-
Souza, R.C.1
Quispe Saji, G.D.2
Costa, M.O.3
Netto, D.S.4
Lima, N.C.5
Klein, C.C.6
Vasconcelos, A.T.7
Nicolas, M.F.8
-
16
-
-
0344393521
-
Lytic transglycosylases in macromolecular transport systems of Gram-negative bacteria
-
Koraimann, G. (2003) Lytic transglycosylases in macromolecular transport systems of Gram-negative bacteria. Cell. Mol. Life Sci., 60, 2371-2388.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 2371-2388
-
-
Koraimann, G.1
-
17
-
-
79953702794
-
Role of the cag-pathogenicity Island encoded type IV secretion system in Helicobacter pylori pathogenesis
-
Tegtmeyer, N., Wessler, S. and Backert, S. (2011) Role of the cag-pathogenicity island encoded type IV secretion system in Helicobacter pylori pathogenesis. FEBS J., 278, 1190-1202.
-
(2011)
FEBS J.
, vol.278
, pp. 1190-1202
-
-
Tegtmeyer, N.1
Wessler, S.2
Backert, S.3
-
18
-
-
14644438364
-
Circular genome visualization and exploration using CGView
-
Stothard, P. and Wishart, D.S. (2005) Circular genome visualization and exploration using CGView. Bioinformatics, 21, 537-539.
-
(2005)
Bioinformatics
, vol.21
, pp. 537-539
-
-
Stothard, P.1
Wishart, D.S.2
-
19
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
20
-
-
65449188232
-
Jalview Version 2 - A multiple sequence alignment editor and analysis workbench
-
Waterhouse, A.M., Procter, J.B., Martin, D.M., Clamp, M. and Barton, G.J. (2009) Jalview Version 2 - a multiple sequence alignment editor and analysis workbench. Bioinformatics, 25, 1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
21
-
-
34547591343
-
Primer3Plus, an enhanced web interface to Primer3
-
Untergasser, A., Nijveen, H., Rao, X., Bisseling, T., Geurts, R. and Leunissen, J.A. (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res, 35, W71-74.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Untergasser, A.1
Nijveen, H.2
Rao, X.3
Bisseling, T.4
Geurts, R.5
Leunissen, J.A.6
-
22
-
-
84862100340
-
ICEberg: A web-based resource for integrative and conjugative elements found in Bacteria
-
Bi, D., Xu, Z., Harrison, E.M., Tai, C., Wei, Y., He, X., Jia, S., Deng, Z., Rajakumar, K. and Ou, H.Y. (2012) ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res., 40, D621-D626.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Bi, D.1
Xu, Z.2
Harrison, E.M.3
Tai, C.4
Wei, Y.5
He, X.6
Jia, S.7
Deng, Z.8
Rajakumar, K.9
Ou, H.Y.10
-
23
-
-
79959931985
-
HMMER web server: Interactive sequence similarity searching
-
Finn, R.D., Clements, J. and Eddy, S.R. (2011) HMMER web server: interactive sequence similarity searching. Nucleic Acids Res., 39, W29-W37.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Finn, R.D.1
Clements, J.2
Eddy, S.R.3
-
24
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher, A.L., Bratke, K.A., Powers, E.C. and Salzberg, S.L. (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics, 23, 673-679.
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
25
-
-
77952299957
-
Prodigal: Prokaryotic gene recognition and translation initiation site identification
-
Hyatt, D., Chen, G.L., Locascio, P.F., Land, M.L., Larimer, F.W. and Hauser, L.J. (2010) Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics, 11, 119.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
|