Characterization and Localization of Insoluble Organic Matrices Associated with Diatom Cell Walls: Insight into Their Roles during Cell Wall Formation

PLoS ONE

Volumn 8, Issue 4, 2013, Pages

  Tesson, Benoit ^a   Hildebrand, Mark ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE POLYMER; MANNOSE; GLUCOSE; SILICON DIOXIDE;

AMPHORA SALINA; ARTICLE; ATOMIC FORCE MICROSCOPY; CARBOHYDRATE ANALYSIS; CELL DIVISION; CELL STRUCTURE; CELL WALL; CONTROLLED STUDY; COSCINODISCUS RADIATUS; DIATOM; FLUORESCENCE MICROSCOPY; GAS CHROMATOGRAPHY; MASS SPECTROMETRY; MOLECULAR DYNAMICS; MORPHOGENESIS; NAVICULA CRYPTOCEPHALA; NITZSHIA CURVILINEATA; NONHUMAN; PROTEIN LOCALIZATION; SPECIES IDENTIFICATION; STEPHANOPYXIS TURRIS; TRICERATIUM DUBIUM; CHEMISTRY; MASS FRAGMENTOGRAPHY; PHYSIOLOGY; POLYMERIZATION; ULTRASTRUCTURE;

BACILLARIOPHYTA;

CELL DIVISION; CELL WALL; DIATOMS; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; GLUCOSE; MANNOSE; MICROSCOPY, ATOMIC FORCE; MICROSCOPY, FLUORESCENCE; MORPHOGENESIS; POLYMERIZATION; SILICON DIOXIDE;

EID: 84876564783     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0061675     Document Type: Article

References (44)

1. Raven JA, Waite AM, (2004) The evolution of silicification in diatoms: inescape sinking or sinking as escape? New Phytologist 162: 45-61.
2. Drum RW, Pankratz HS, (1964) Post mitotic fine structure of Gomphonema parvulum. Journal of Ultrastructure Research 10: 217-223.
3. Reimann BEF, Lewin JC, Volcani BE (1966) Studies on Biochemistry and Fine Structure of Silica Shell Formation in Diatoms.2. Structure of Cell Wall of Navicula Pelliculosa (Breb) Hilse. Journal of Phycology 2: 74-&.
4. Pickett-Heaps JD, Schmid AMM, Edgar LA (1990) The cell biology of diatom valve formation. Round FE CD, editor: Biopress Bristol. 168 p.
5. Kröger N, Poulsen N, (2008) Diatoms-From cell wall biogenesis to nanotechnology. Annual Review of Genetics 42: 83-107.
6. van de Meene AML, Pickett-Heaps JD, (2002) Valve morphogenesis in the centric diatom Proboscia alata Sundstrom. Journal of Phycology 38: 351-363.
7. Van de Meene AML, Pickett-Heaps JD, (2004) Valve morphogenesis in the centric diatom Rhizosolenia setigera (Bacillariophyceae, Centrales) and its taxonomic implications. European Journal of Phycology 39: 93-104.
8. Tesson B, Hildebrand M, (2010) Dynamics of silica cell wall morphogenesis in the diatom Cyclotella cryptica: Substructure formation and the role of microfilaments. Journal of Structural Biology 169: 62-74.
9. Tesson B, Hildebrand M, (2010) Extensive and Intimate Association of the Cytoskeleton with Forming Silica in Diatoms: Control over Patterning on the Meso- and Micro-Scale. PLoS ONE 5 (12): e14300 doi:10.1371/journal.pone.0014300.
10. Reiman BEF, Lewin JC, Volcani BE, (1966) Studies on the biochemistry and fine structure of silica shell formation in diatoms. II. The structure of the cell wall of Navicula pelliculosa (Breb.) Hilse. Journal of Phycology 2: 74-84.
11. Von Stosch HA (1981) Structural and histochemical observations on the organic layers of the diatom cell wall. In Proceedings of the 6th international symposium on recent and fossil diatoms. Budapest. Ross, R, editor, Koenigstein, Germany. 231-252.
12. Crawford RM, (1973) The organic component of the cell wall of the marine diatom Melosira nummuloides (Dillw.) C. Ag. British Phycological Journal 8: 257-266.
13. Schnepf E, Drebes G, (1977) The structure of the frustule of Attheya decora west (bacillariophyceae, biddulphiineae) with special reference to the organic compounds. British Phycological Journal 12: 145-154.
14. Scheffel A, Poulsen N, Shian S, Kroger N, (2011) Nanopatterned protein microrings from a diatom that direct silica morphogenesis. Proc Nat Acad Sci USA 108: 3175-3180.
15. Chiovitti A, Harper RE, Willis A, Bacic A, Mulvaney P, et al. (2005) Variation in the substituted 3-linked mannans closely associated with the silicified wall of diatoms. Journal of Phycology 41: 1154-1161.
16. Hecky RE, Mopper K, Kilham P, Degens ET, (1973) The amino acid and sugar composition of diatom cell-walls. Marine Biology 19: 323-331.
17. Ford CW, Percival E, (1965) The carbohydrate of Phaeodactylum tricornutum. Part II. A sulphated glucuromannan. Journal of Chemical Society 1298: 7042-7046.
18. Percival E, Rahman MA, Weigel H, (1980) Chemistry of the polysaccharides of the diatom Coscinodiscus nobilis. Phytochemistry 19: 809-811.
19. Volcani BE (1981) Cell wall formation in diatoms: morphogenesis and biochemistry. In: Simpson TL, Volcani BE, editors. Silicon and siliceous structure in biological systems. New York: Springer-Verlag. 157-200.
20. McConville MJ, Wetherbee R, Bacic A, (1999) Subcellular location and composition of the wall and secreted extracellular sulphated polysaccharides/proteoglycans of the diatom Stauroneis amphioxys Gregory. Protoplasma 206: 188-200.
21. Waterkeyn L, Bienfait A, (1987) Localization and function of beta 1,3-glucans (callose and chrysolaminarin) in pinnularia genus (Diatoms). Cellule 74: 199-226.
22. Darley WM, Volcani BE, (1969) Role of silicon in diatom metabolism: A silicon requirement for deoxyribonucleic acid synthesis in the diatom Cylindrotheca fusiformis Reimann and Lewin. Experimental Cell Research 58: 334-342.
23. Hildebrand M, Frigeri LG, Davis AK, (2007) Synchronized growth of Thalassiosira pseudonana (Bacillariophyceae) provides novel insights into cell-wall synthesis processes in relation to the cell cycle. Journal of Phycology 43: 730-740.
24. Desclés J, Vartanian M, El Harrak A, Quinet M, Bremond N, et al. (2008) New tools for labeling silica in living diatoms. New Phytologist 177: 822-829.
25. Pittenger B, Erina N, Su C (2010) Quantitative Mechanical Property Mapping at the Nanoscale with PeakForce QNM. Bruker Application Note #128.
26. Round F.E., Crawford R.M., Mann D.G. (1990) The Diatoms: Biology and Morphology of the Genera. Bath: Cambridge University Press. 760 p.
27. Wustman BA, Gretz MR, Hoagland KD, (1997) Extracellular matrix assembly in diatoms (Bacillariophyceae). II A model of adhesives based on chemical characterization and localization of polysaccharides from the marine diatom Achnanthes longipes and other diatoms. Plant Physiology 113: 1059-1069.
28. Bridoux MC, Ingalls AE, (2010) Structural identification of long-chain polyamines associated with diatom biosilica in a Southern Ocean sediment core. Geochimica et Cosmochimica Acta 74: 4044-4057.
29. Ingalls AE, Whitehead K, Bridoux MC, (2010) Tinted windows: The presence of the UV absorbing compounds called mycosporine-like amino acids embedded in the frustules of marine diatoms. Geochimica et Cosmochimica Acta 74: 104-115.
30. Morrison VA, (2006) Echinocandin antifungals: review and update. Expert Review of Anti-infective Therapy 4: 325-342.
31. Brunner E, Richthammer P, Ehrlich H, Paasch S, Simon P, et al. (2009) Chitin-based organic networks: An integral part of cell wall biosilica in the diatom Thalassiosira pseudonana. Angew Chem 48: 9724-9727.
32. Hildebrand M, York E, Kelz JI, Davis AK, Frigeri LG, et al. (2006) Nanoscale controle of silica morphology and three-dimensional structure during diatom cell wall formation. Journal of Materials Research 21: 2689-2698.
33. Hildebrand M, (2008) Diatoms, Biomineralization Processes, and Genomics. Chemical Review 108: 4855-4874.
34. Hildebrand M, Holton G, Joy DC, Doktycz MJ, Allison DP, (2009) Diverse and conserved nano- and mesoscale structures of diatom silica revealed by atomic force microscopy. Journal of Microscopy 235: 172-187.
35. Tesson B, Gaillard C, Martin-Jezequel V, (2009) Insights into the polymorphism of the diatom Phaeodactylum tricornutum Bohlin. Botanica Marina 52: 104-116.
36. Wang Y, Chen Y, Lavin C, Gretz MR, (2000) Extracellular matrix assembly in diatoms (Bacillariophyceae). iv. ultrastructure of Achnanthes longipes and Cymbella cistula as revealed by high-pressure freezing/freeze substituton and cryo-field emission scanning electron microscopy Journal of Phycology 36: 367-378.
37. Bledzki AK, Gassan J, (1999) Composites reinforced with cellulose based fibres. Progress in Polymer Science 24: 221-274.
38. Lau RKL, Kwok ACM, Chan WK, Zhang TY, Wong JTY, (2007) Mechanical characterization of cellulosic thecal plates in dinoflagellates by nanoindentation. Journal of Nanoscience and Nanotechnology 7: 452-457.
39. Higgins MJ, Molino P, Mulvaney P, Wetherbee R, (2003) The structure and nanomechanical properties of the adhesive mucilage that mediates diatom-substratum adhesion and motility. Journal of Phycology 39: 1181-1193.
40. Francius G, Tesson B, Dague E, Martin-Jezequel V, Dufrene YF, (2008) Nanostructure and nanomechanics of live Phaeodactylum tricornutum morphotypes. Environmental Microbiology 10: 1344-1356.
41. Crawford SA, Higgins MJ, Mulvaney P, Wetherbee R, (2001) Nanostructure of the diatom frustule as revealed by atomic force and scanning electron microscopy. Journal of Phycology 37: 543-554.
42. Kröger N, Bergsdorf C, Sumper M, (1996) Frustulins: Domain Conservation in a Protein Family Associated with Diatom Cell Walls. European Journal of Biochemistry 239: 259-264.
43. Tesson B, Genet MJ, Fernandez V, Degand S, Rouxhet PG, et al. (2009) Surface Chemical Composition of Diatoms. ChemBioChem 10: 2011-2024.
44. Shrestha R, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, et al. (2012) Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana. BMC Genomics 13.