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Volumn 41, Issue D1, 2013, Pages

NPIDB: Nucleic acid - Protein interaction database

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBONUCLEOPROTEIN;

EID: 84876514881     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1199     Document Type: Article
Times cited : (55)

References (21)
  • 2
    • 33745696155 scopus 로고    scopus 로고
    • CluD, a program for determination of hydrophobic clusters in 3D structures of protein and protein-nucleic acids complexes
    • Alexeevski, A., Spirin, S., Alexeevski, D., Klychnikov, O., Ershova, A., Titov, M. and Karyagina, A. (2004) CluD, a program for determination of hydrophobic clusters in 3D structures of protein and protein-nucleic acids complexes. Biophysics, 48(Suppl. 1), 146-150.
    • (2004) Biophysics , vol.48 , Issue.SUPPL. 1 , pp. 146-150
    • Alexeevski, A.1    Spirin, S.2    Alexeevski, D.3    Klychnikov, O.4    Ershova, A.5    Titov, M.6    Karyagina, A.7
  • 4
    • 33746124556 scopus 로고    scopus 로고
    • Biomolecules in the computer: Jmol to the rescue
    • Herraez, A. (2006) Biomolecules in the computer: Jmol to the rescue. Biochem. Mol. Biol. Educ., 34, 255-261.
    • (2006) Biochem. Mol. Biol. Educ. , vol.34 , pp. 255-261
    • Herraez, A.1
  • 7
    • 75549088300 scopus 로고    scopus 로고
    • 3D-footprint: A database for the structural analysis of protein-DNA complexes
    • Contreras-Moreira, B. (2010) 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic Acids Res., 38, D91-D97.
    • (2010) Nucleic Acids Res. , vol.38
    • Contreras-Moreira, B.1
  • 8
    • 77952246173 scopus 로고    scopus 로고
    • The Protein-DNA Interface database
    • Norambuena, T. and Melo, F. (2010) The Protein-DNA Interface database. BMC Bioinformatics, 11, 262.
    • (2010) BMC Bioinformatics , vol.11 , pp. 262
    • Norambuena, T.1    Melo, F.2
  • 10
    • 66349098186 scopus 로고    scopus 로고
    • BIPA: A database for protein-nucleic acid interaction in 3D structures
    • Lee, S. and Blundell, T.L. (2009) BIPA: a database for protein-nucleic acid interaction in 3D structures. Bioinformatics, 25, 1559-1560.
    • (2009) Bioinformatics , vol.25 , pp. 1559-1560
    • Lee, S.1    Blundell, T.L.2
  • 11
    • 67650403798 scopus 로고    scopus 로고
    • PDA: An automatic and comprehensive analysis program for protein-DNA complex structures
    • Kim, R. and Guo, J.T. (2009) PDA: an automatic and comprehensive analysis program for protein-DNA complex structures. BMC Genomics, 10(Suppl. 1), S13.
    • (2009) BMC Genomics , vol.10 , Issue.SUPPL. 1
    • Kim, R.1    Guo, J.T.2
  • 14
    • 36549064679 scopus 로고    scopus 로고
    • NPIDB, a database of nucleic acids-protein interactions
    • Spirin, S., Titov, M., Karyagina, A. and Alexeevski, A. (2007) NPIDB, a database of nucleic acids-protein interactions. Bioinformatics, 23, 3247-3248.
    • (2007) Bioinformatics , vol.23 , pp. 3247-3248
    • Spirin, S.1    Titov, M.2    Karyagina, A.3    Alexeevski, A.4
  • 15
    • 77749292431 scopus 로고    scopus 로고
    • Statistics and physical origins of pK and ionization state changes upon protein-ligand binding
    • Aguilar, B., Anandakrishnan, R., Ruscio, J.Z. and Onufriev, A.V. (2010) Statistics and physical origins of pK and ionization state changes upon protein-ligand binding. Biophys. J., 98, 872-880.
    • (2010) Biophys. J. , vol.98 , pp. 872-880
    • Aguilar, B.1    Anandakrishnan, R.2    Ruscio, J.Z.3    Onufriev, A.V.4
  • 16
    • 78049370802 scopus 로고    scopus 로고
    • Effects of the biological backbone on stacking interactions at DNA-protein interfaces: The interplay between the backbone center dot center dot center dot pi and pi center dot center dot center dot pi components
    • Churchill, C.D.M., Rutledge, L.R. and Wetmore, S.D. (2010) Effects of the biological backbone on stacking interactions at DNA-protein interfaces: the interplay between the backbone center dot center dot center dot pi and pi center dot center dot center dot pi components. Phys. Chem. Chem. Phys., 12, 14515-14526.
    • (2010) Phys. Chem. Chem. Phys. , vol.12 , pp. 14515-14526
    • Churchill, C.D.M.1    Rutledge, L.R.2    Wetmore, S.D.3
  • 17
    • 79960580102 scopus 로고    scopus 로고
    • Small cofactors may assist protein emergence from RNA world: Clues from RNA-protein complexes
    • Shen, L. and Ji, H.F. (2011) Small cofactors may assist protein emergence from RNA world: clues from RNA-protein complexes. PLoS One, 6, e22494.
    • (2011) PLoS One , vol.6
    • Shen, L.1    Ji, H.F.2
  • 18
    • 0029619259 scopus 로고
    • Knowledge-based protein secondary structure assignment
    • Frishman, D. and Argos, P. (1995) Knowledge-based protein secondary structure assignment. Proteins, 23, 566-579.
    • (1995) Proteins , vol.23 , pp. 566-579
    • Frishman, D.1    Argos, P.2
  • 19
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profile HMM searches
    • Eddy, S.R. (2011) Accelerated profile HMM searches. PLoS Comp. Biol., 7, e1002195.
    • (2011) PLoS Comp. Biol. , vol.7
    • Eddy, S.R.1
  • 20
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (PDBeFold), a new tool for fast protein structure alignment in three dimensions
    • Krissinel, E. and Henrick, K. (2004) Secondary-structure matching (PDBeFold), a new tool for fast protein structure alignment in three dimensions. Acta Cryst., D60, 2256-2268.
    • (2004) Acta Cryst. , vol.D60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 21
    • 51749117617 scopus 로고    scopus 로고
    • Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions
    • Aksianov, E., Zanegina, O., Grishin, A., Spirin, S., Karyagina, A. and Alexeevski, A. (2008) Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions. J. Bioinform. Comput. Biol., 6, 775-788.
    • (2008) J. Bioinform. Comput. Biol. , vol.6 , pp. 775-788
    • Aksianov, E.1    Zanegina, O.2    Grishin, A.3    Spirin, S.4    Karyagina, A.5    Alexeevski, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.