메뉴 건너뛰기




Volumn 3, Issue 3, 2013, Pages 296-316

Direct chemical dynamics simulations: Coupling of classical and quasiclassical trajectories with electronic structure theory

Author keywords

[No Author keywords available]

Indexed keywords

CONICAL INTERSECTION; ELECTRONIC STRUCTURE THEORY; ENERGY PARTITIONING; POST-TRANSITION STATE; PREDICTOR-CORRECTOR ALGORITHM; QUASICLASSICAL TRAJECTORIES; UNIMOLECULAR DECOMPOSITIONS; UNIMOLECULAR REACTIONS;

EID: 84876497743     PISSN: 17590876     EISSN: 17590884     Source Type: Journal    
DOI: 10.1002/wcms.1132     Document Type: Review
Times cited : (101)

References (125)
  • 2
    • 36849119382 scopus 로고
    • Monte Carlo calculations. II. The reactions of alkali atoms with methyl iodide
    • Blais NC, Bunker DL. Monte Carlo calculations. II. The reactions of alkali atoms with methyl iodide. J Chem Phys 1962, 37:2713-2720.
    • (1962) J Chem Phys , vol.37 , pp. 2713-2720
    • Blais, N.C.1    Bunker, D.L.2
  • 4
    • 5244343714 scopus 로고
    • Azimuthal anisotropies of dimer ions ejected from ion bombarded Ni(001)
    • Holland SP, Garrison BJ, Winograd N. Azimuthal anisotropies of dimer ions ejected from ion bombarded Ni(001). Phys Rev Lett 1980, 44:756-759.
    • (1980) Phys Rev Lett , vol.44 , pp. 756-759
    • Holland, S.P.1    Garrison, B.J.2    Winograd, N.3
  • 5
    • 0031560342 scopus 로고    scopus 로고
    • Energy transfer in rare gas collisions with self-assembled monolayers
    • Bosio SBM, Hase WL. Energy transfer in rare gas collisions with self-assembled monolayers. J Chem Phys 1997, 107:9677-9686.
    • (1997) J Chem Phys , vol.107 , pp. 9677-9686
    • Bosio, S.B.M.1    Hase, W.L.2
  • 6
    • 0345223586 scopus 로고
    • Classical trajectory calculation of the benzene overtone spectra
    • Lu DH, Hase WL. Classical trajectory calculation of the benzene overtone spectra. J Phys Chem 1988, 92:3217-3225.
    • (1988) J Phys Chem , vol.92 , pp. 3217-3225
    • Lu, D.H.1    Hase, W.L.2
  • 7
    • 77951456948 scopus 로고    scopus 로고
    • Model non-equilibrium molecular dynamics simulations of heat transfer from a hot gold surface to an alkylthiolate self-assembled monolayer
    • Zhang Y, Barnes GL, Yan T, Hase WL. Model non-equilibrium molecular dynamics simulations of heat transfer from a hot gold surface to an alkylthiolate self-assembled monolayer. Phys Chem Chem Phys 2010, 12:4435-4445.
    • (2010) Phys Chem Chem Phys , vol.12 , pp. 4435-4445
    • Zhang, Y.1    Barnes, G.L.2    Yan, T.3    Hase, W.L.4
  • 8
    • 79956134258 scopus 로고    scopus 로고
    • Effect of carbon chain length on the dynamics of heat transfer at a gold/hydrocarbon interface: comparison of simulation with experiment
    • Manikandan P, Carter JA, Dlott DD, Hase WL. Effect of carbon chain length on the dynamics of heat transfer at a gold/hydrocarbon interface: comparison of simulation with experiment. J Phys Chem C 2011, 115:9622-9628.
    • (2011) J Phys Chem C , vol.115 , pp. 9622-9628
    • Manikandan, P.1    Carter, J.A.2    Dlott, D.D.3    Hase, W.L.4
  • 10
    • 0000007533 scopus 로고
    • Classical trajectory methods
    • Bunker DL. Classical trajectory methods. Methods Comput Phys 1971, 10:287-325.
    • (1971) Methods Comput Phys , vol.10 , pp. 287-325
    • Bunker, D.L.1
  • 14
    • 33846312975 scopus 로고
    • Dynamics of organic reactions
    • Wang ISY, Karplus M. Dynamics of organic reactions. J Am Chem Soc 1973, 95:8160-8164.
    • (1973) J Am Chem Soc , vol.95 , pp. 8160-8164
    • Wang, I.S.Y.1    Karplus, M.2
  • 16
  • 17
    • 0142215212 scopus 로고    scopus 로고
    • Born-Oppenheimer direct dynamics classical trajectory simulations
    • Sun L, Hase WL. Born-Oppenheimer direct dynamics classical trajectory simulations. Rev Comput Chem 2003, 19:79-146.
    • (2003) Rev Comput Chem , vol.19 , pp. 79-146
    • Sun, L.1    Hase, W.L.2
  • 18
    • 53149087875 scopus 로고    scopus 로고
    • Monte Carlo sampling for classical trajectory simulations
    • Peslherbe GH, Wang H, Hase WL. Monte Carlo sampling for classical trajectory simulations. Adv Chem Phys 1999, 105:171-201.
    • (1999) Adv Chem Phys , vol.105 , pp. 171-201
    • Peslherbe, G.H.1    Wang, H.2    Hase, W.L.3
  • 19
    • 0002460114 scopus 로고
    • Reactive scattering cross sections III: Quasiclassical and Semiclassical methods
    • Bernstein RB, ed. New York: Plenum
    • Truhlar DG, Muckerman JT. Reactive scattering cross sections III: Quasiclassical and Semiclassical methods. In: Bernstein RB, ed. Atom-Molecule Collision Theory. New York: Plenum; 1979, 505-566.
    • (1979) Atom-Molecule Collision Theory , pp. 505-566
    • Truhlar, D.G.1    Muckerman, J.T.2
  • 21
    • 31544434891 scopus 로고    scopus 로고
    • Dynamics and kinetics of heat transfer at the interface of model Diamond {111} nanosurfaces
    • Mazyar OA, Hase WL. Dynamics and kinetics of heat transfer at the interface of model Diamond {111} nanosurfaces. J Phys Chem A 2006, 110:526-536.
    • (2006) J Phys Chem A , vol.110 , pp. 526-536
    • Mazyar, O.A.1    Hase, W.L.2
  • 22
    • 47549108241 scopus 로고    scopus 로고
    • Classical trajectory simulations of post-transition state dynamics
    • Lourderaj U, Park K, Hase WL. Classical trajectory simulations of post-transition state dynamics. Int Rev Phys Chem 2008, 27:361-403.
    • (2008) Int Rev Phys Chem , vol.27 , pp. 361-403
    • Lourderaj, U.1    Park, K.2    Hase, W.L.3
  • 23
    • 84859253094 scopus 로고    scopus 로고
    • N2 nucleophilic substitution reactions. Nonstatistical dynamics and nontraditional reaction mechanisms
    • N2 nucleophilic substitution reactions. Nonstatistical dynamics and nontraditional reaction mechanisms. J Phys Chem A 2012, 116:3061-3080.
    • (2012) J Phys Chem A , vol.116 , pp. 3061-3080
    • Manikandan, P.1    Zhang, J.2    Hase, W.L.3
  • 24
    • 0001481955 scopus 로고
    • Classical mechanics of intramolecular vibrational energy flow in benzene. IV. Models with reduced dimensionality
    • Lu D, Hase WL. Classical mechanics of intramolecular vibrational energy flow in benzene. IV. Models with reduced dimensionality. J Chem Phys 1988, 89:6723-6735.
    • (1988) J Chem Phys , vol.89 , pp. 6723-6735
    • Lu, D.1    Hase, W.L.2
  • 25
    • 36549099151 scopus 로고
    • A simple model for correcting the zero point energy problem in classical trajectory simulations of polyatomic molecules
    • Miller WH, Hase WL, Darling CL. A simple model for correcting the zero point energy problem in classical trajectory simulations of polyatomic molecules. J Chem Phys 1989, 91:2863-2868.
    • (1989) J Chem Phys , vol.91 , pp. 2863-2868
    • Miller, W.H.1    Hase, W.L.2    Darling, C.L.3
  • 27
    • 0009060832 scopus 로고
    • 2: why quantum dynamics appears to be more vibrationally adiabatic than classical dynamics
    • 2: why quantum dynamics appears to be more vibrationally adiabatic than classical dynamics. J Chem Phys 1983, 79:5386-5391.
    • (1983) J Chem Phys , vol.79 , pp. 5386-5391
    • Schatz, G.C.1
  • 28
    • 0013586317 scopus 로고
    • 5 bimolecular rate constant
    • 5 bimolecular rate constant. J Phys Chem 1983, 87:4715-4720.
    • (1983) J Phys Chem , vol.87 , pp. 4715-4720
    • Swamy, K.N.1    Hase, W.L.2
  • 29
    • 84986520489 scopus 로고
    • Dynamics of ethyl radical decomposition. II. Applicability of classical mechanics to large molecule unimolecular reaction dynamics
    • Hase WL, Buchowski DG. Dynamics of ethyl radical decomposition. II. Applicability of classical mechanics to large molecule unimolecular reaction dynamics. J Comput Chem 1982, 3:335-343.
    • (1982) J Comput Chem , vol.3 , pp. 335-343
    • Hase, W.L.1    Buchowski, D.G.2
  • 30
    • 36549095556 scopus 로고
    • Intramolecular vibrational relaxation and spectra of CH and CD overtones in benzene and perdeuterobenzene
    • Sibert III, EL, Reinhardt WP, Hynes JT. Intramolecular vibrational relaxation and spectra of CH and CD overtones in benzene and perdeuterobenzene. J Chem Phys 1984, 81:1115-1134.
    • (1984) J Chem Phys , vol.81 , pp. 1115-1134
    • Sibert III, E.L.1    Reinhardt, W.P.2    Hynes, J.T.3
  • 31
    • 36448998991 scopus 로고
    • Quantum dynamics of overtone relaxation in benzene. II. 16 mode model for relaxation from CH(v = 3)
    • Wyatt RE, Iung C, Leforestier C. Quantum dynamics of overtone relaxation in benzene. II. 16 mode model for relaxation from CH(v = 3). J Chem Phys 1992, 97:3477-3486.
    • (1992) J Chem Phys , vol.97 , pp. 3477-3486
    • Wyatt, R.E.1    Iung, C.2    Leforestier, C.3
  • 35
    • 9744252309 scopus 로고    scopus 로고
    • 4 + HF product energy partitioning
    • 4 + HF product energy partitioning. J Chem Phys 2004, 121:8831-8845.
    • (2004) J Chem Phys , vol.121 , pp. 8831-8845
    • Sun, L.1    Hase, W.L.2
  • 36
    • 0001683956 scopus 로고
    • 1 state: a comparison of exact quantum mechanical wave packet calculations with classical trajectory calculations and detailed experimental results
    • 1 state: a comparison of exact quantum mechanical wave packet calculations with classical trajectory calculations and detailed experimental results. J Chem Phys 1993, 99:9553-9566.
    • (1993) J Chem Phys , vol.99 , pp. 9553-9566
    • Untch, A.1    Schinke, R.2    Cotting, R.3    Huber, J.R.4
  • 39
    • 0037012415 scopus 로고    scopus 로고
    • Direct evidence for base-mediated decomposition of alkyl hydroperoxides (ROOH) in the gas phase
    • Blanksby SJ, Ellison GB, Bierbaum VM, Kato S. Direct evidence for base-mediated decomposition of alkyl hydroperoxides (ROOH) in the gas phase. J Am Chem Soc 2002, 124:3196-3197.
    • (2002) J Am Chem Soc , vol.124 , pp. 3196-3197
    • Blanksby, S.J.1    Ellison, G.B.2    Bierbaum, V.M.3    Kato, S.4
  • 40
    • 0004465903 scopus 로고
    • Formulation of the reaction coordinate
    • Fukui K. Formulation of the reaction coordinate. J Phys Chem 1970, 74:4161-4163.
    • (1970) J Phys Chem , vol.74 , pp. 4161-4163
    • Fukui, K.1
  • 45
    • 0001888675 scopus 로고
    • MOPAC 7.0, A General Molecular Orbital Package
    • Stewart JPP. MOPAC 7.0, A General Molecular Orbital Package. Quant Chem Prog Exch 1990, 10:86-97.
    • (1990) Quant Chem Prog Exch , vol.10 , pp. 86-97
    • Stewart, J.P.P.1
  • 47
    • 0000884580 scopus 로고    scopus 로고
    • Ab initio classical trajectories on the Born-Oppenheimer surface: Hessian-based integrators using fifth order polynomial and rational function
    • Millam JM, Bakken V, Chen W, Hase WL, Schlegel HB. Ab initio classical trajectories on the Born-Oppenheimer surface: Hessian-based integrators using fifth order polynomial and rational function. Fits J Chem Phys 1999, 111:3800-3805.
    • (1999) Fits J Chem Phys , vol.111 , pp. 3800-3805
    • Millam, J.M.1    Bakken, V.2    Chen, W.3    Hase, W.L.4    Schlegel, H.B.5
  • 48
    • 0000659569 scopus 로고    scopus 로고
    • Ab initio classical trajectories on the Born-Oppenheimer surface: updating methods for Hessian-based integrators
    • Bakken V, Millam JM, Schlegel HB. Ab initio classical trajectories on the Born-Oppenheimer surface: updating methods for Hessian-based integrators. J Chem Phys 1999, 111:8773-8777.
    • (1999) J Chem Phys , vol.111 , pp. 8773-8777
    • Bakken, V.1    Millam, J.M.2    Schlegel, H.B.3
  • 49
    • 33847691891 scopus 로고    scopus 로고
    • Direct dynamics simulations using Hessian-based predictor-corrector integration algorithms
    • Lourderaj U, Song K, Windus TL, Zhuang Y, Hase WL. Direct dynamics simulations using Hessian-based predictor-corrector integration algorithms. J Chem Phys 2007, 126:044105.
    • (2007) J Chem Phys , vol.126 , pp. 044105
    • Lourderaj, U.1    Song, K.2    Windus, T.L.3    Zhuang, Y.4    Hase, W.L.5
  • 50
    • 73649139543 scopus 로고    scopus 로고
    • Trajectory integration with potential energy discontinuities
    • Hurd P, Cusati T, Persico M. Trajectory integration with potential energy discontinuities. J Comput Phys 2010, 229:2109-2116.
    • (2010) J Comput Phys , vol.229 , pp. 2109-2116
    • Hurd, P.1    Cusati, T.2    Persico, M.3
  • 51
    • 77956090218 scopus 로고    scopus 로고
    • Higher-accuracy schemes for approximating the hessian from electronic structure calculations in chemical dynamics simulations
    • Wu H, Rahman M, Wang J, Lourderaj U, Hase WL, Zhuang Y. Higher-accuracy schemes for approximating the hessian from electronic structure calculations in chemical dynamics simulations. J Chem Phys 2010, 133:074101.
    • (2010) J Chem Phys , vol.133 , pp. 074101
    • Wu, H.1    Rahman, M.2    Wang, J.3    Lourderaj, U.4    Hase, W.L.5    Zhuang, Y.6
  • 52
    • 84986513718 scopus 로고
    • Updated Hessian matrix and the restricted step method for locating transition structures
    • Bofill JM. Updated Hessian matrix and the restricted step method for locating transition structures. J Comput Chem 1994, 15:1-11.
    • (1994) J Comput Chem , vol.15 , pp. 1-11
    • Bofill, J.M.1
  • 53
    • 84968510937 scopus 로고
    • A class of methods for solving nonlinear simultaneous equations
    • Broyden CG. A class of methods for solving nonlinear simultaneous equations. Math Comput 1965, 19:577-593.
    • (1965) Math Comput , vol.19 , pp. 577-593
    • Broyden, C.G.1
  • 54
    • 0002008834 scopus 로고
    • Recent advances in unconstrained optimization
    • Powell MJD. Recent advances in unconstrained optimization. Math Program 1971, 1:26-57.
    • (1971) Math Program , vol.1 , pp. 26-57
    • Powell, M.J.D.1
  • 55
    • 0002663672 scopus 로고
    • Quasi-Newton methods, motivation and theory
    • Dennis JE Jr, Moré JJ. Quasi-Newton methods, motivation and theory. SIAM Rev 1977, 1:46-89.
    • (1977) SIAM Rev , vol.1 , pp. 46-89
    • Dennis Jr., J.E.1    Moré, J.J.2
  • 56
    • 0030603944 scopus 로고    scopus 로고
    • An updated Hessian formula for optimizing transition structures which explicitly contains the potential structure of the desired transition vector
    • Bofill JM. An updated Hessian formula for optimizing transition structures which explicitly contains the potential structure of the desired transition vector. Chem Phys Lett 1996, 260:359-364.
    • (1996) Chem Phys Lett , vol.260 , pp. 359-364
    • Bofill, J.M.1
  • 57
    • 0035608214 scopus 로고    scopus 로고
    • Finding transition states using reduced potential-energy surfaces
    • Bofill JM, Anglada JM. Finding transition states using reduced potential-energy surfaces. Theo Chem Acc 2001, 105:463-472.
    • (2001) Theo Chem Acc , vol.105 , pp. 463-472
    • Bofill, J.M.1    Anglada, J.M.2
  • 58
    • 0000945686 scopus 로고    scopus 로고
    • Analysis of the updated Hessian matrices for locating transition structures
    • Bofill JM, Móanica Comajuan M. Analysis of the updated Hessian matrices for locating transition structures. J Comput Chem 2004, 16:1326-1338.
    • (2004) J Comput Chem , vol.16 , pp. 1326-1338
    • Bofill, J.M.1    Móanica Comajuan, M.2
  • 59
    • 26844543065 scopus 로고    scopus 로고
    • Using Hessian updating to increase the efficiency of a Hessian based predictor-corrector reaction path following method
    • Hratchian HP, Schlegel HB. Using Hessian updating to increase the efficiency of a Hessian based predictor-corrector reaction path following method. J Chem Theor Comput 2005, 1:61-69.
    • (2005) J Chem Theor Comput , vol.1 , pp. 61-69
    • Hratchian, H.P.1    Schlegel, H.B.2
  • 60
    • 9144220381 scopus 로고
    • Compact finite difference schemes with spectral-like resolution
    • Lele S. Compact finite difference schemes with spectral-like resolution. J Comput Phys 1992, 103:16-42.
    • (1992) J Comput Phys , vol.103 , pp. 16-42
    • Lele, S.1
  • 61
    • 0017821792 scopus 로고
    • High accuracy finite difference approximation to solutions of elliptic partial differential equations
    • Lynch RE, Rice JR. High accuracy finite difference approximation to solutions of elliptic partial differential equations. Proc Natl Acad Sci USA 1978, 75:2541-2544.
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 2541-2544
    • Lynch, R.E.1    Rice, J.R.2
  • 62
    • 0032155919 scopus 로고    scopus 로고
    • High-order finite difference methods for the Helmholtz equation
    • Singer I, Turkel E. High-order finite difference methods for the Helmholtz equation. Comput Meth Appl Mech Eng 1998, 163:343-358.
    • (1998) Comput Meth Appl Mech Eng , vol.163 , pp. 343-358
    • Singer, I.1    Turkel, E.2
  • 63
    • 0342409507 scopus 로고    scopus 로고
    • A high order ADI method for separable generalized Helmholtz equations
    • Zhuang Y, Sun XH. A high order ADI method for separable generalized Helmholtz equations. Adv Eng Soft 2000, 31:585-591.
    • (2000) Adv Eng Soft , vol.31 , pp. 585-591
    • Zhuang, Y.1    Sun, X.H.2
  • 64
    • 0002346969 scopus 로고    scopus 로고
    • A high-order fast direct solver for singular poisson equations
    • Zhuang Y, Sun XH. A high-order fast direct solver for singular poisson equations. J Comput Phys 2001, 171:79-94.
    • (2001) J Comput Phys , vol.171 , pp. 79-94
    • Zhuang, Y.1    Sun, X.H.2
  • 66
    • 84972047841 scopus 로고
    • Theory of algorithms for unconstrained optimization
    • Nocedal J. Theory of algorithms for unconstrained optimization. Acta Numer 1992, 1:199-242.
    • (1992) Acta Numer , vol.1 , pp. 199-242
    • Nocedal, J.1
  • 67
    • 4243606192 scopus 로고
    • Unified approach for molecular dynamics and density-functional theory
    • Car R, Parrinello M. Unified approach for molecular dynamics and density-functional theory. Phys Rev Lett 1985, 55:2471-2474.
    • (1985) Phys Rev Lett , vol.55 , pp. 2471-2474
    • Car, R.1    Parrinello, M.2
  • 68
    • 0039835159 scopus 로고    scopus 로고
    • A mathematical investigation of the Car-Parrinello method
    • Bornemann FA, Schütte C. A mathematical investigation of the Car-Parrinello method. Numer Math 1998, 78:359-376.
    • (1998) Numer Math , vol.78 , pp. 359-376
    • Bornemann, F.A.1    Schütte, C.2
  • 69
    • 0036143736 scopus 로고    scopus 로고
    • How well do Car-Parrinello simulations reproduce the Born-Oppenheimer surface? Theory and examples.
    • Tangney P, Scandolo S. How well do Car-Parrinello simulations reproduce the Born-Oppenheimer surface? Theory and examples. J Chem Phys 2002, 116:14-24.
    • (2002) J Chem Phys , vol.116 , pp. 14-24
    • Tangney, P.1    Scandolo, S.2
  • 70
    • 0942288567 scopus 로고    scopus 로고
    • Towards an assessment of the accuracy of density functional theory for first principles simulations of water
    • Grossman JC, Schwegler E, Draeger EW, Gygi F, Galli G. Towards an assessment of the accuracy of density functional theory for first principles simulations of water. J Chem Phys 2004, 120:300-311.
    • (2004) J Chem Phys , vol.120 , pp. 300-311
    • Grossman, J.C.1    Schwegler, E.2    Draeger, E.W.3    Gygi, F.4    Galli, G.5
  • 71
    • 4944230287 scopus 로고    scopus 로고
    • Towards an assessment of the accuracy of density functional theory for first principles simulations of water. II
    • Schwegler E, Grossman JC, Gygi F, Galli G. Towards an assessment of the accuracy of density functional theory for first principles simulations of water. II. J Chem Phys 2004, 121:5400-5409.
    • (2004) J Chem Phys , vol.121 , pp. 5400-5409
    • Schwegler, E.1    Grossman, J.C.2    Gygi, F.3    Galli, G.4
  • 72
    • 11144248876 scopus 로고    scopus 로고
    • Curvy-steps approach to constraint-free extended-Lagrangian ab initio molecular dynamics, using atom-centered basis functions: convergence toward Born-Oppenheimer trajectories
    • Herbert JM, Head-Gordon M. Curvy-steps approach to constraint-free extended-Lagrangian ab initio molecular dynamics, using atom-centered basis functions: convergence toward Born-Oppenheimer trajectories. J Chem Phys 2004, 121:11542-11556.
    • (2004) J Chem Phys , vol.121 , pp. 11542-11556
    • Herbert, J.M.1    Head-Gordon, M.2
  • 73
    • 33846320458 scopus 로고    scopus 로고
    • Time-dependent properties of liquid water: a comparison of Car-Parrinello and Born-Oppenheimer molecular dynamics simulations
    • Kuo I-F W, Mundy CJ, McGrath MJ, Siepmann JI. Time-dependent properties of liquid water: a comparison of Car-Parrinello and Born-Oppenheimer molecular dynamics simulations. J Chem Theor Comput 2006, 2:1274-1281.
    • (2006) J Chem Theor Comput , vol.2 , pp. 1274-1281
    • Kuo, I.-F.W.1    Mundy, C.J.2    McGrath, M.J.3    Siepmann, J.I.4
  • 74
    • 31544469822 scopus 로고    scopus 로고
    • On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter
    • Tangney P. On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter. J Chem Phys 2006, 124:044111.
    • (2006) J Chem Phys , vol.124 , pp. 044111
    • Tangney, P.1
  • 75
    • 78649727924 scopus 로고    scopus 로고
    • Vibrational frequencies in Car-Parrinello molecular dynamics
    • Ong SW, Tok ES, Kang HC. Vibrational frequencies in Car-Parrinello molecular dynamics. Phys Chem Chem Phys 2012, 12:14960-14966.
    • (2012) Phys Chem Chem Phys , vol.12 , pp. 14960-14966
    • Ong, S.W.1    Tok, E.S.2    Kang, H.C.3
  • 76
    • 15344345714 scopus 로고    scopus 로고
    • QUICKSTEP: fast and accurate density functional calculations using a mixed Gaussian and plane waves approach
    • VandeVondele J, Krack M, Mohamed F, Parrinello M, Chassaing T, Hutter J. QUICKSTEP: fast and accurate density functional calculations using a mixed Gaussian and plane waves approach. Comput Phys Commun 2005, 167:103-128.
    • (2005) Comput Phys Commun , vol.167 , pp. 103-128
    • VandeVondele, J.1    Krack, M.2    Mohamed, F.3    Parrinello, M.4    Chassaing, T.5    Hutter, J.6
  • 77
    • 0001562794 scopus 로고    scopus 로고
    • Classical trajectory simulations: initial conditions
    • Allinger NL, ed. New York: John Wiley & Sons
    • Hase WL. Classical trajectory simulations: initial conditions. In: Allinger NL, ed. Encyclopedia of Computational Chemistry. Vol 1. New York: John Wiley & Sons; 1998, 402-407.
    • (1998) Encyclopedia of Computational Chemistry , vol.1 , pp. 402-407
    • Hase, W.L.1
  • 81
    • 0001172907 scopus 로고
    • Monte Carlo sampling of a microcanonical ensemble of harmonic oscillators
    • Hase WL, Buchowski DG. Monte Carlo sampling of a microcanonical ensemble of harmonic oscillators. Chem Phys Lett 1980, 74:284-287.
    • (1980) Chem Phys Lett , vol.74 , pp. 284-287
    • Hase, W.L.1    Buchowski, D.G.2
  • 83
    • 33745014742 scopus 로고
    • On the quantum correction for thermodynamic equilibrium
    • Wigner E. On the quantum correction for thermodynamic equilibrium. Phys Rev 1932, 40:749-759.
    • (1932) Phys Rev , vol.40 , pp. 749-759
    • Wigner, E.1
  • 84
    • 0001381047 scopus 로고
    • Some formal properties of the density matrix
    • Husimi K. Some formal properties of the density matrix. Proc Phys Math Soc Jpn 1940, 22:264-314.
    • (1940) Proc Phys Math Soc Jpn , vol.22 , pp. 264-314
    • Husimi, K.1
  • 85
    • 0022678152 scopus 로고
    • Wigner and Husimi functions in quantum mechanics
    • Takahashi K. Wigner and Husimi functions in quantum mechanics. J Phys Soc Jpn 1986, 55:762-779.
    • (1986) J Phys Soc Jpn , vol.55 , pp. 762-779
    • Takahashi, K.1
  • 86
    • 79959251943 scopus 로고    scopus 로고
    • Algorithms for sampling a quantum microcanonical ensemble of harmonic oscillators at potential minima and conical intersections
    • Park K, Engelkemier J, Persico M, Manikandan P, Hase WL. Algorithms for sampling a quantum microcanonical ensemble of harmonic oscillators at potential minima and conical intersections. J Phys Chem A 2011, 115:6603-6609.
    • (2011) J Phys Chem A , vol.115 , pp. 6603-6609
    • Park, K.1    Engelkemier, J.2    Persico, M.3    Manikandan, P.4    Hase, W.L.5
  • 87
    • 84976693911 scopus 로고
    • Number of multiply restricted partitions
    • Beyer T, Swinehart DF. Number of multiply restricted partitions. ACM Commun 1973, 16:379.
    • (1973) ACM Commun , vol.16 , pp. 379
    • Beyer, T.1    Swinehart, D.F.2
  • 88
    • 80755176412 scopus 로고    scopus 로고
    • Use of direct dynamics simulations to determine unimolecular reaction paths and Arrhenius parameters for large molecules
    • Yang L, Sun R, Hase WL. Use of direct dynamics simulations to determine unimolecular reaction paths and Arrhenius parameters for large molecules. J Chem Theo Comput 2011, 7:3478-3483.
    • (2011) J Chem Theo Comput , vol.7 , pp. 3478-3483
    • Yang, L.1    Sun, R.2    Hase, W.L.3
  • 89
    • 51349096378 scopus 로고    scopus 로고
    • Potential energy surface and unimolecular dynamics of stretched n-butane
    • Lourderaj U, McAfee JL, Hase WL. Potential energy surface and unimolecular dynamics of stretched n-butane. J Chem Phys 2008, 129:094701.
    • (2008) J Chem Phys , vol.129 , pp. 094701
    • Lourderaj, U.1    McAfee, J.L.2    Hase, W.L.3
  • 91
    • 0001078346 scopus 로고    scopus 로고
    • Dynamics of atomic oxygen induced polymer degradation in low earth orbit
    • Dressler RA, ed. Advanced Series in Physical Chemistry. London: World Scientific
    • Minton T, Garton DJ. Dynamics of atomic oxygen induced polymer degradation in low earth orbit. In: Dressler RA, ed. Chemical Dynamics in Extreme Environments. Advanced Series in Physical Chemistry. London: World Scientific; 2001, 11:420-489.
    • (2001) Chemical Dynamics in Extreme Environments. , vol.11 , pp. 420-489
    • Minton, T.1    Garton, D.J.2
  • 93
    • 0037168352 scopus 로고    scopus 로고
    • Direct dynamics simulations of collision- and surface-induced dissociation of N-protonated glycine. Shattering fragmentation
    • Meroueh SO, Wang Y, Hase WL. Direct dynamics simulations of collision- and surface-induced dissociation of N-protonated glycine. Shattering fragmentation. J Phys Chem A 2002, 106:9983-9992.
    • (2002) J Phys Chem A , vol.106 , pp. 9983-9992
    • Meroueh, S.O.1    Wang, Y.2    Hase, W.L.3
  • 95
    • 77955678781 scopus 로고    scopus 로고
    • Comparisons of classical and Wigner sampling of transition state energy levels for quasiclassical trajectory chemical dynamics simulations
    • Sun L, Hase WL. Comparisons of classical and Wigner sampling of transition state energy levels for quasiclassical trajectory chemical dynamics simulations. J Chem Phys 2010, 133:044313.
    • (2010) J Chem Phys , vol.133 , pp. 044313
    • Sun, L.1    Hase, W.L.2
  • 97
    • 2242440384 scopus 로고
    • Trajectory surface hopping approach to nonadiabatic molecular collisions: the reaction of H+ with D2
    • Tully JC, Preston RK. Trajectory surface hopping approach to nonadiabatic molecular collisions: the reaction of H+ with D2. J Chem Phys 1971, 55:562-572.
    • (1971) J Chem Phys , vol.55 , pp. 562-572
    • Tully, J.C.1    Preston, R.K.2
  • 98
    • 13044304431 scopus 로고
    • Molecular dynamics with electronic transitions
    • Tully JC. Molecular dynamics with electronic transitions. J Chem Phys 1990, 93:1061-1071.
    • (1990) J Chem Phys , vol.93 , pp. 1061-1071
    • Tully, J.C.1
  • 100
    • 0001294195 scopus 로고    scopus 로고
    • Conical intersections: diabolical and often misunderstood
    • Yarkony DR. Conical intersections: diabolical and often misunderstood. Acc Chem Res 1998, 31:511-518.
    • (1998) Acc Chem Res , vol.31 , pp. 511-518
    • Yarkony, D.R.1
  • 102
    • 0001562794 scopus 로고    scopus 로고
    • Classical trajectory simulations: final conditions
    • Allinger NL, ed. New York: John Wiley & Sons
    • Hase WL. Classical trajectory simulations: final conditions. In: Allinger NL, ed. Encyclopedia of Computational Chemistry. Vol 1. New York: John Wiley & Sons; 1998.
    • (1998) Encyclopedia of Computational Chemistry , vol.1
    • Hase, W.L.1
  • 103
    • 0031551540 scopus 로고    scopus 로고
    • Quasiclassical trajectory method for molecular scattering processes: necessity of a weighted binning approach
    • Bonnet L, Rayez JC. Quasiclassical trajectory method for molecular scattering processes: necessity of a weighted binning approach. Chem Phys Lett 1997, 277:183-190.
    • (1997) Chem Phys Lett , vol.277 , pp. 183-190
    • Bonnet, L.1    Rayez, J.C.2
  • 104
    • 7444260796 scopus 로고    scopus 로고
    • Gaussian weighting in the quasiclassical trajectory method
    • Bonnet L, Rayez JC. Gaussian weighting in the quasiclassical trajectory method. Chem Phys Lett 2004, 397:106-109.
    • (2004) Chem Phys Lett , vol.397 , pp. 106-109
    • Bonnet, L.1    Rayez, J.C.2
  • 107
    • 0033523229 scopus 로고    scopus 로고
    • N2 reaction at high reagent translational energy
    • N2 reaction at high reagent translational energy. J Am Chem Soc 1999, 121:7124-7129.
    • (1999) J Am Chem Soc , vol.121 , pp. 7124-7129
    • Li, G.1    Hase, W.L.2
  • 109
    • 0037012868 scopus 로고    scopus 로고
    • N2 reaction that avoids its deep potential energy minimum
    • N2 reaction that avoids its deep potential energy minimum. Science 2002, 296:875-878.
    • (2002) Science , vol.296 , pp. 875-878
    • Sun, L.1    Song, K.2    Hase, W.L.3
  • 114
    • 11744336402 scopus 로고
    • Variational unimolecular rate theory
    • Hase WL. Variational unimolecular rate theory. Acc Chem Res 1983, 16:258-264.
    • (1983) Acc Chem Res , vol.16 , pp. 258-264
    • Hase, W.L.1
  • 115
    • 0001469555 scopus 로고
    • 4 recombination. Comparison of quasiclassical trajectory and variational transition state theory
    • 4 recombination. Comparison of quasiclassical trajectory and variational transition state theory. J Chem Phys 1985, 83:3448-3453.
    • (1985) J Chem Phys , vol.83 , pp. 3448-3453
    • Hase, W.L.1    Duchovic, R.J.2
  • 116
    • 11244335758 scopus 로고    scopus 로고
    • Hyperthermal chemistry in the gas phase and on surfaces: theoretical studies
    • Troya D, Schatz GC. Hyperthermal chemistry in the gas phase and on surfaces: theoretical studies. Int Rev Phys Chem 2004, 23:341-373.
    • (2004) Int Rev Phys Chem , vol.23 , pp. 341-373
    • Troya, D.1    Schatz, G.C.2
  • 117
    • 79952515578 scopus 로고    scopus 로고
    • Fragmentation and reactivity in collisions of protonated diglycine with chemically modified perfluorinated alkylthiolate-self-assembled monolayer surfaces
    • Barnes GL, Young K, Yang L, Hase WL. Fragmentation and reactivity in collisions of protonated diglycine with chemically modified perfluorinated alkylthiolate-self-assembled monolayer surfaces. J Chem Phys 2011, 134:094106.
    • (2011) J Chem Phys , vol.134 , pp. 094106
    • Barnes, G.L.1    Young, K.2    Yang, L.3    Hase, W.L.4
  • 119
    • 32644457993 scopus 로고    scopus 로고
    • Use of a single trajectory to study product energy partitioning in unimolecular dissociation. Mass effects for halogenated alkanes
    • Sun L, Park K, Song K, Setser DW, Hase WL. Use of a single trajectory to study product energy partitioning in unimolecular dissociation. Mass effects for halogenated alkanes. J Chem Phys 2006, 124:064313.
    • (2006) J Chem Phys , vol.124 , pp. 064313
    • Sun, L.1    Park, K.2    Song, K.3    Setser, D.W.4    Hase, W.L.5
  • 120
    • 10444277260 scopus 로고
    • Hydrogen fluoride/hydrogen chloride vibrational and rotational distributions from three- and four-centered unimolecular elimination reactions
    • Arunan E, Wategaonkar SJ, Setser DW. Hydrogen fluoride/hydrogen chloride vibrational and rotational distributions from three- and four-centered unimolecular elimination reactions. J Phys Chem 1991, 95:1539-1547.
    • (1991) J Phys Chem , vol.95 , pp. 1539-1547
    • Arunan, E.1    Wategaonkar, S.J.2    Setser, D.W.3
  • 121
    • 84953346939 scopus 로고
    • Energy disposal in unimolecular elimination reactions
    • Zamir F, Levine RD. Energy disposal in unimolecular elimination reactions. Chem Phys 1980, 52:253-268.
    • (1980) Chem Phys , vol.52 , pp. 253-268
    • Zamir, F.1    Levine, R.D.2
  • 122
    • 72449139076 scopus 로고    scopus 로고
    • Trajectory surface-hopping study of methane photodissociation dynamics
    • Lodriguito MD, Lendvay G, Schatz GC. Trajectory surface-hopping study of methane photodissociation dynamics. J Chem Phys 2009, 131:224320.
    • (2009) J Chem Phys , vol.131 , pp. 224320
    • Lodriguito, M.D.1    Lendvay, G.2    Schatz, G.C.3
  • 123
    • 34447622847 scopus 로고    scopus 로고
    • The on-the-fly surface-hopping program system NEWTON-X: application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems
    • Barbatti M, Granucci G, Persico M, Ruckenbauer M, Vazdar M, Eckert-Maksić M, Lischka H. The on-the-fly surface-hopping program system NEWTON-X: application to ab initio simulation of the nonadiabatic photodynamics of benchmark systems. J Photochem Photobiol A: Chem 2007, 190:228-240.
    • (2007) J Photochem Photobiol A: Chem , vol.190 , pp. 228-240
    • Barbatti, M.1    Granucci, G.2    Persico, M.3    Ruckenbauer, M.4    Vazdar, M.5    Eckert-Maksić, M.6    Lischka, H.7
  • 124
    • 0001656246 scopus 로고
    • Dynamics of ethyl radical decomposition. 3. Effect of chemical activation vs. microcanonical sampling
    • Hase WL, Buckowski DG, Swamy KN, Dynamics of ethyl radical decomposition. 3. Effect of chemical activation vs. microcanonical sampling. J Phys Chem 1983, 87:2754-2763.
    • (1983) J Phys Chem , vol.87 , pp. 2754-2763
    • Hase, W.L.1    Buckowski, D.G.2    Swamy, K.N.3
  • 125
    • 84859226209 scopus 로고    scopus 로고
    • Classical trajectory simulations
    • Gross M, Capriolli R, Armentrout PB eds. New York: Elsevier Science
    • Hase WL, Classical trajectory simulations. In: Gross M, Capriolli R, Armentrout PB eds. Encyclopedia of Mass Spectrometry. Vol 1. New York: Elsevier Science; 2003, p 40-46.
    • (2003) Encyclopedia of Mass Spectrometry , vol.1 , pp. 40-46
    • Hase, W.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.