Curvature correction of retinal OCTs using graph-based geometry detection

Physics in Medicine and Biology

Volumn 58, Issue 9, 2013, Pages 2925-2938

  Kafieh, Raheleh ^a   Rabbani, Hossein ^a,b   Abramoff, Michael D ^b   Sonka, Milan ^b  

^a ISFAHAN UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b UNIVERSITY OF IOWA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATIC METHOD; CONTRAST TO NOISE RATIO; CURVATURE CORRECTION; DE-NOISING ALGORITHM; PATHOLOGICAL IMAGES; POSITIONING ERROR; PRE-PROCESSING STEP; WAVELET DIFFUSION;

ALGORITHMS; GEOMETRY; GRAPHIC METHODS; SIGNAL TO NOISE RATIO;

OPTICAL TOMOGRAPHY;

ARTICLE; COMPUTER GRAPHICS; CYTOLOGY; HUMAN; IMAGE PROCESSING; METHODOLOGY; OPTICAL COHERENCE TOMOGRAPHY; PATHOLOGY; RETINA; RETINA DISEASE; SIGNAL NOISE RATIO;

COMPUTER GRAPHICS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; RETINA; RETINAL DISEASES; SIGNAL-TO-NOISE RATIO; TOMOGRAPHY, OPTICAL COHERENCE;

EID: 84876494218     PISSN: 00319155     EISSN: 13616560     Source Type: Journal    
DOI: 10.1088/0031-9155/58/9/2925     Document Type: Article

References (32)

1. Abràmoff M D, Lee K, Niemeijer M, Alward W L M, Greenlee E C, Garvin M K, Sonka M and Kwon Y H 2009 Automated segmentation of the cup and rim from spectral domain OCT of the optic nerve head Invest. Ophthalmol. Vis. Sci. 50 5778-84
2. Bagci A M, Shahidi M, Ansari R, Blair M, Blair N P and Zelkha R 2008 Thickness profile of retinal layers by optical coherence tomography image segmentation Am. J. Ophthalmol. 146 679-87
3. Bah B 2008 Diffusion maps: analysis and applications MA Thesis Wolfson College, University of Oxford, UK
4. Baroni M, Fortunato P and LaTorre A 2007 Towards quantitative analysis of retinal features in optical coherence tomography Med. Eng. Phys. 29 432-41 (Pubitemid 46074436)
5. Bellman R 1958 On a routing problem Report No P-1000 available at www.rand.org/pubs/papers/P1000.html
6. Boyer K L, Herzog A and Roberts C 2006 Automatic recovery of the optic nerve head geometry in optical coherence tomography IEEE Trans. Med. Imaging 25 553-70
7. DeBuc D C 2011 A review of algorithms for segmentation of retinal image data using optical coherence tomography Image Segmentation (Rijeta: InTech) Chap. 2
8. de la Porte J, Herbs B M, Hereman W and van der Walt S J 2008 An introduction to diffusion maps Proc. 19th Symp. of the Pattern Recognition Association of South Africa (Cape Town South Africa, 27-28 Nov. 2008) pp 15-25
9. Dijkstra E W 1959 A note on two problems in connection with graphs Numer. Math. 1 269-71
10. Fernández D C, Villate N, Puliafito C A and Rosenfeld P J 2004 Comparing total macular volume changes measured by optical coherence tomography with retinal lesion volume estimated by active contours Invest. Ophthalmol. Vis. Sci. 45 3072 E-Abstract
11. Fuller A R, Zawadzki R J, Choi S, Wiley D F, Werner J S and Hamann B 2007 Segmentation of three-dimensional retinal image data IEEE Trans. Vis. Comput. Graphics 13 1719-26 (Pubitemid 350076653)
12. Garvin M K, Abramoff M D, Kardon R, Russell S R, Xiaodong W and Sonka M 2008 Intraretinal layer segmentation of macular optical coherence tomography images using optimal 3-D graph search IEEE Trans. Med. Imaging 27 1495-505
13. George A, Dillenseger J A, Weber A and Pechereau A 2000 Optical coherence tomography image processing Invest. Ophthalmol. Vis. Sci. 41 165-73
14. Gregori G and Knighton R W 2004 A robust algorithm for retinal thickness measurements using optical coherence tomography (Stratus OCT) Invest. Ophthalmol. Vis. Sci. 45 3007 E-Abstract
15. Hee M R, Izatt J A, Swanson E A, Huang D, Schuman J S, Lin C P, Puliafito C A and Fujimoto J G 1995 Optical coherence tomography of the human retina Arch. Ophthalmol. 113 325-32
16. Herzog A, Boyer K L and Roberts C 2004 Robust extraction of the optic nerve head in optical coherence tomography Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis (Berlin/Heidelberg: Springer) pp 395-407 (Pubitemid 39746739)
17. Huang D et al 1991 Optical coherence tomography Science 254 1178-81 (Pubitemid 21917444)
18. Ishikawa H, Stein D M, Wollstein G, Beaton S, Fujimoto J G and Schuman J S 2005 Macular segmentation with optical coherence tomography Invest. Ophthalmol. Vis. Sci. 46 2012-7
19. Koozekanani D, Boyer K L and Roberts C 2001 Retinal thickness measurements in optical coherence tomography using a Markov boundary model IEEE Trans. Med. Imaging 20 900-16 (Pubitemid 32992593)
20. Lee K, Abramoff M D, Niemeijer M, Garvin M K and Sonka M 2010 3-D segmentation of retinal blood vessels in spectral-domain OCT volumes of the optic nerve head Proc. SPIE 7626 76260V
21. Mayer M A, Tornow R P, Bock R, Hornegger J and Kruse F E 2008 Automatic nerve fiber layer segmentation and geometry correction on spectral domain OCT images using fuzzy C-means clustering Invest. Ophthalmol. Vis. Sci. 49 1880 E-Abstract
22. Mishra A, Wong A, Bizheva K and Clausi D A 2009 Intra-retinal layer segmentation in optical coherence tomography images Opt. Express 17 23719-28
23. Pizurica A, Jovanov L and Huysmans B 2008 Multiresolution denoising for optical coherence tomography: a review and evaluation Curr. Med. Imaging Rev. 4 270-84
24. Quellec G, Lee K, Dolejsi M, Garvin M K, Abràmoff M D and Sonka M 2010 Three-dimensional analysis of retinal layer texture: identification of fluid-filled regions in SD-OCT of the macula IEEE Trans. Med. Imaging 29 1321-30
25. Rabbani H, Kafieh R and Fooohandeh M 2012 Circular symmetric Laplacian mixture model in wavelet diffusion for dental image denoising J. Med. Signals Sensors 2 103-11
26. Rajpoot K, Rajpoot N and Noble J A 2008 Discrete wavelet diffusion for image denoising Image and Signal Processing (Berlin/Heidelberg: Springer) pp 20-8
27. Shahidi M, Wang Z and Zelkha R 2005 Quantitative thickness measurement of retinal layers imaged by optical coherence tomography Am. J. Ophthalmol. 139 1056-61 (Pubitemid 40813317)
28. Singer A 2007 Detecting the slow manifold by anisotropic diffusion maps Proc. Natl Acad. Sci. USA 106 16090-5
29. Srinivasan V J, Monson B K, Wojtkowski M, Bilonick R A, Gorczynska I, Chen R, Duker J S, Schuman J S and Fujimoto J G 2008 Characterization of outer retinal morphology with high-speed, ultrahigh-resolution optical coherence tomography Invest. Ophthalmol. Vis. Sci. 49 1571-9
30. Yang Q, Reisman C A, Wang Z, Fukuma Y, Hangai M, Yoshimura N, Tomidokoro A, Araie M, Raza A R, Hood D C and Chan K 2010 Automated layer segmentation of macular OCT images using dual-scale gradient information Opt. Express 18 21293-307
31. Yazdanpanah A, Hamarneh G, Smith B and Sarunic M 2009 Intra-retinal layer segmentation in optical coherence tomography using an active contour approach 12th Int. Conf. on Medical Image Computing and Computer Assisted Intevention (MICCAI 2009) Lect. Notes Comput. Sci. 649-56
32. Yue Y, Croitoru M M, Bidani A, Zwischenberger J B and Clark J W 2006 Multiscale wavelet diffusion for speckle suppression and edge enhancement in ultrasound images IEEE Trans. Med. Imaging 25 297-311 (Pubitemid 43320646)