Crowdsourcing genomic analyses of ash and ash dieback - power to the people

GigaScience

Volumn 2, Issue 1, 2013, Pages

  MacLean, Dan ^a   Yoshida, Kentaro ^a   Edwards, Anne ^a   Crossman, Lisa ^a   Clavijo, Bernardo ^a   Clark, Matt ^a   Swarbreck, David ^a   Bashton, Matthew ^b   Chapman, Patrick ^c   Gijzen, Mark ^c   Caccamo, Mario ^a   Downie, Allan ^a   Kamoun, Sophien ^a   Saunders, Diane G O ^a  

^a NORWICH RESEARCH PARK   (United Kingdom)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c AGRICULTURE AND AGRI FOOD CANADA   (Canada)

Author keywords

Altmetrics; Ash dieback; Crowdsource; Genomics; Open source

Indexed keywords

COMPLEMENTARY DNA; RNA;

ASH; ASH DIEBACK; CHALARA FRAXINEA; CROWDSOURCING; DNA LIBRARY; ENVIRONMENTAL PROTECTION; FOOD SECURITY; FRAXINUS; FUNGAL GENOME; FUNGAL PLANT DISEASE; FUNGUS; GENOME ANALYSIS; GENOMICS; NONHUMAN; NOTE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TRANSCRIPTOMICS;

EID: 84876357397     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/2047-217X-2-2     Document Type: Note

References (8)

1. Forestry commission Great Britain, Chalara dieback of ash http://www.forestry.gov.uk/chalara.
2. Birch PRJ, Kamoun S. Studying interaction transcriptomes: coordinated analyses of gene expression during plant-microorganism interactions. New Technologies for Life Sciences: A Trends Guide 2000, 77-82. New York: Elsevier Science.
3. GitHub crowdsource BGI data https://github.com/ehec-outbreak-crowdsourced/BGI-data-analysis/wiki.
4. GitHub ash dieback crowdsource data https://github.com/ash-dieback-crowdsource/data.
5. Green S, Studholme DJ, Laue BE, Dorati F, Lovell H, Arnold D, Cottrell JE, Bridgett S, Blaxter M, Huitema E, Thwaites R, Sharp PM, Jackson RW, Kamoun S. Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum. PLoS One 2010, 5:e10224. 10.1371/journal.pone.0010224, 2856684, 20419105.
6. Kamoun S. Genomics of emerging plant pathogens: too little, too late. Microbiol Today 2012, 39:140.
7. Piwowar H. Altmetrics: Value all research products. Nature 2013, 493:159.
8. Schatz MC, Phillippy AM. The rise of a digital immune system. GigaScience 2012, 1:4.