Multidimensional x-ray spectroscopy of valence and core excitations in cysteine

Journal of Chemical Physics

Volumn 138, Issue 14, 2013, Pages

  Biggs, Jason D ^a   Zhang, Yu ^a   Healion, Daniel ^a   Mukamel, Shaul ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID CYSTEINE; CORE EXCITATION; CORE-EXCITED STATE; NONLINEAR SPECTROSCOPY; OXYGEN AND NITROGENS; POLARIZABILITIES; VALENCE EXCITATIONS; X-RAY SIGNALS;

PROBES; RAMAN SPECTROSCOPY; THREE DIMENSIONAL COMPUTER GRAPHICS; X RAY SPECTROSCOPY;

AMINO ACIDS;

CYSTEINE; NITROGEN; OXYGEN;

CHEMISTRY; RAMAN SPECTROMETRY; X RAY ABSORPTION SPECTROSCOPY;

CYSTEINE; NITROGEN; OXYGEN; SPECTRUM ANALYSIS, RAMAN; X-RAY ABSORPTION SPECTROSCOPY;

EID: 84876352013     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4799266     Document Type: Article

References (47)

1. D. Healion, H. Wang, and S. Mukamel, J. Chem. Phys. 134, 124101 (2011). 10.1063/1.3557057
2. J. D. Biggs, Y. Zhang, D. Healion, and S. Mukamel, J. Chem. Phys. 136, 174117 (2012). 10.1063/1.4706899
3. Y. Zhang, J. D. Biggs, D. Healion, N. Govind, and S. Mukamel, J. Chem. Phys. 137, 194306 (2012). 10.1063/1.4766356
4. S. Mukamel, D. Healion, Y. Zhang, and J. D. Biggs, Multidimensional attosecond resonant x-ray spectroscopy of molecules: Lessons from the optical regime., Ann. Rev. Phys. Chem. (published online). 10.1146/annurev-physchem- 040412-110021
5. S. Mukamel, Principles of Nonlinear Optical Spectroscopy (Oxford University Press, New York, 1995).
6. R. R. Ernst, G. Bodenhausen, and A. Wokaun, Principles of Nuclear Magnetic Resonance in One and Two Dimensions (Oxford University Press, USA, 1990).
7. E. L. Hahn, Phys. Today 6 (11), 4 (1953). 10.1063/1.3061075
8. E. L. Hahn, Phys. Rev. 80, 580 (1950). 10.1103/PhysRev.80.580
9. I. D. Abella, N. A. Kurnit, and S. R. Hartmann, Phys. Rev. 141, 391 (1966). 10.1103/PhysRev.141.391
10. T. J. Aartsma and D. A. Wiersma, Chem. Phys. Lett. 42, 520 (1976). 10.1016/0009-2614(76)80667-7
11. D. E. Cooper, R. W. Olson, and M. D. Fayer, J. Chem. Phys. 72, 2332 (1980). 10.1063/1.439480
12. P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B 102, 6123 (1998). 10.1021/jp9813286
13. M. C. Asplund, M. T. Zanni, and R. M. Hochstrasser, Proc. Natl. Acad. Sci. U.S.A. 97, 8219 (2000). 10.1073/pnas.140227997
14. M. L. Cowan, B. D. Bruner, N. Huse, J. R. Dwyer, B. Chugh, E. T. J. Nibbering, T. Elsaesser, and R. J. D. Miller, Nature (London) 434, 199 (2005). 10.1038/nature03383
15. Y.-C. Cheng and G. R. Fleming, Ann. Rev. Phys. Chem. 60, 241 (2009). 10.1146/annurev.physchem.040808.090259
16. E. Collini, C. Y. Wong, K. E. Wilk, P. M. G. Curmi, P. Brumer, and G. D. Scholes, Nature (London) 463, 644-647 (2010). 10.1038/nature08811
17. S. T. Cundiff, T. Zhang, A. D. Bristow, D. Karaiskaj, and X. Dai, Acc. Chem. Res. 42, 1423 (2009). 10.1021/ar9000636
18. J. Ullrich, A. Rudenko, and R. Moshammer, Ann. Rev. Phys. Chem. 63, 635 (2012). 10.1146/annurev-physchem-032511-143720
19. J. M. Glownia, J. Cryan, J. Andreasson, A. Belkacem, N. Berrah, C. I. Blaga, C. Bostedt, J. Bozek, L. F. DiMauro, L. Fang, J. Frisch, O. Gessner, M. Gühr, J. Hajdu, M. P. Hertlein, M. Hoener, G. Huang, O. Kornilov, J. P. Marangos, A. M. March, B. K. McFarland, H. Merdji, V. S. Petrovic, C. Raman, D. Ray, D. A. Reis, M. Trigo, J. L. White, W. White, R. Wilcox, L. Young, R. N. Coffee, and P. H. Bucksbaum, Opt. Express 18, 17620 (2010). 10.1364/OE.18.017620
20. L. Gallmann, C. Cirelli, and U. Keller, Ann. Rev. Phys. Chem. 63, 447 (2012). 10.1146/annurev-physchem-032511-143702
21. A. Zholents and G. Penn, Nucl. Instrum. Methods Phys. Res. A 612, 254 (2010). 10.1016/j.nima.2009.10.063
22. F. F. Guimarães and F. Gelmukhanov, J. Chem. Phys. 125, 204313 (2006). 10.1063/1.2393234
23. F. F. Guimarães, V. Kimberg, F. Gelmukhanov, and H. Ågren, Phys. Rev. A 70, 062504 (2004). 10.1103/PhysRevA.70.062504
24. E. Goulielmakis, Z.-H. Loh, A. Wirth, R. Santra, N. Rohringer, V. S. Yakovlev, S. Zherebtsov, T. Pfeifer, A. M. Azzeer, M. F. Kling, S. R. Leone, and F. Krausz, Nature (London) 466, 739 (2010). 10.1038/nature09212
25. A. I. Kuleff and L. S. Cederbaum, Phys. Rev. Lett. 98, 083201 (2007). 10.1103/PhysRevLett.98.083201
26. G. Sansone, T. Pfeifer, K. Simeonidis, and A. I. Kuleff, ChemPhysChem 13, 661 (2012). 10.1002/cphc.201100528
27. L.-Y. Peng, Z. Zhang, W.-C. Jiang, G.-Q. Zhang, and Q. Gong, Phys. Rev. A 86, 063401 (2012). 10.1103/PhysRevA.86.063401
28. P. Tzallas, E. Skantzakis, L. A. A. Nikolopoulos, G. D. Tsakiris, and D. Charalambidis, Nat. Phys. 7, 781 (2011). 10.1038/nphys2033
29. K. Meyer, C. Ott, P. Raith, A. Kaldun, Y. Jiang, A. Senftleben, M. Kurka, R. Moshammer, J. Ullrich, and T. Pfeifer, Phys. Rev. Lett. 108, 098302 (2012). 10.1103/PhysRevLett.108.098302
30. J. D. Biggs, J. A. Voll, and S. Mukamel, Philos. Trans. R. Soc. London, Ser. A 370, 3709 (2012). 10.1098/rsta.2011.0219
31. S. Mukamel and S. Rahav, in Advances in Atomic, Molecular, and Optical Physics, Advances in Atomic, Molecular, and Optical Physics Vol. 59, edited by, P. B. E. Arimondo, and, C. Lin, (Academic Press, 2010), pp. 223-263.
32. T. Hayashi and A. A. Stuchebrukhov, Proc. Natl. Acad. Sci. U.S.A. 107, 19157 (2010). 10.1073/pnas.1009181107
33. M. J. Frisch, G. W. Trucks, H. B. Schlegel, GAUSSIAN 09, Revision C.01, Gaussian, Inc. Wallingford, CT, 2009.
34. A. D. Becke, J. Chem. Phys. 98, 5648 (1993). 10.1063/1.464913
35. P. J. Stephens, F. J. Devlin, C. F. Chabalowski, and M. J. Frisch, J. Phys. Chem. 98, 11623 (1994). 10.1021/j100096a001
36. M. Valiev, E. Bylaska, N. Govind, K. Kowalski, T. Straatsma, H. van Dam, D. Wang, J. Nieplocha, E. Apra, T. Windus, and W. de Jong, Comput. Phys. Commun. 181, 1477 (2010). 10.1016/j.cpc.2010.04.018
37. K. Lopata, B. E. Van Kuiken, M. Khalil, and N. Govind, J. Chem. Theory Comput. 8, 3284 (2012). 10.1021/ct3005613
38. T. Yanai, D. Tew, and N. Handy, Chem. Phys. Lett. 393, 51 (2004). 10.1016/j.cplett.2004.06.011
39. S. Hirata and M. Head-Gordon, Chem. Phys. Lett. 314, 291 (1999). 10.1016/S0009-2614(99)01149-5
40. D. Abramavicius and S. Mukamel, J. Chem. Phys. 133, 184501 (2010). 10.1063/1.3493580
41. I. V. Schweigert and S. Mukamel, J. Chem. Phys. 128, 184307 (2008). 10.1063/1.2839859
42. D. Healion, J. D. Biggs, and S. Mukamel, Phys. Rev. A 86, 033429 (2012). 10.1103/PhysRevA.86.033429
43. P. Emma, R. Akre, J. Arthur, R. Bionta, C. Bostedt, J. Bozek, A. Brachmann, P. Bucksbaum, R. Coffee, F. J. Decker, Y. Ding, D. Dowell, S. Edstrom, A. Fisher, J. Frisch, S. Gilevich, J. Hastings, G. Hays, Ph. Hering, Z. Huang, R. Iverson, H. Loos, M. Messerschmidt, A. Miahnahri, S. Moeller, H. D. Nuhn, G. Pile, D. Ratner, J. Rzepiela, D. Schultz, T. Smith, P. Stefan, H. Tompkins, J. Turner, J. Welch, W. White, J. Wu, G. Yocky, and J. Galayda, Nat. Photonics 4, 641 (2010). 10.1038/nphoton.2010.176
44. M. Hoener, L. Fang, O. Kornilov, O. Gessner, S. T. Pratt, M. Gühr, E. P. Kanter, C. Blaga, C. Bostedt, J. D. Bozek, P. H. Bucksbaum, C. Buth, M. Chen, R. Coffee, J. Cryan, L. DiMauro, M. Glownia, E. Hosler, E. Kukk, S. R. Leone, B. McFarland, M. Messerschmidt, B. Murphy, V. Petrovic, D. Rolles, and N. Berrah, Phys. Rev. Lett. 104, 253002 (2010). 10.1103/PhysRevLett.104.253002
45. B. Patterson, Resource letter on stimulated inelastic x-ray scattering at an XFEL., Technical Report (SLAC, 2010), see http://slac.stanford.edu/pubs/ slactns/tn04/slac-tn-10-026.pdf.
46. G. H. Zschornack, Handbook of X-ray Data, 1st ed. (Springer, 2007).
47. D. L. Andrews and T. Thirunamachandran, J. Phys. Chem. 67, 5026 (1977). 10.1063/1.434725