메뉴 건너뛰기




Volumn 29, Issue 8, 2013, Pages 965-972

An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BAYES THEOREM; CHROMOSOME MAP; COMPUTER PROGRAM; DNA SEQUENCE; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN GENOME; METHODOLOGY; RHESUS MONKEY; SEQUENCE ALIGNMENT; STATISTICAL MODEL; X CHROMOSOME;

EID: 84876249593     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt073     Document Type: Article
Times cited : (12)

References (10)
  • 2
    • 77954139210 scopus 로고    scopus 로고
    • Incorporating sequence quality data into alignment im-proves DNA read mapping
    • Frith, M.C. et al. (2010) Incorporating sequence quality data into alignment im-proves DNA read mapping. Nucleic Acids Res., 38, e100.
    • (2010) Nucleic Acids Res. , vol.38
    • Frith, M.C.1
  • 3
    • 78651320424 scopus 로고    scopus 로고
    • The UCSC genome browser database: Update 2011
    • Fujita, P.A. et al. (2011) The UCSC genome browser database: update 2011. Nucleic Acids Res., 39, D876-D882.
    • (2011) Nucleic Acids Res. , vol.39
    • Fujita, P.A.1
  • 4
    • 79952256999 scopus 로고    scopus 로고
    • Adaptive seeds tame genomic sequence comparison
    • Kiełbasa, S.M. et al. (2011) Adaptive seeds tame genomic sequence comparison. Genome Res., 21, 487-493.
    • (2011) Genome Res. , vol.21 , pp. 487-493
    • Kiełbasa, S.M.1
  • 5
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S.L. (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 6
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignmen with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignmen with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 7
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: An improved ultrafast tool for short read alignment
    • Li, R. et al. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, 25, 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1
  • 8
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
    • Lunter, G. and Goodson, M. (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res., 21, 936-939.
    • (2011) Genome Res. , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 9
    • 0035173378 scopus 로고    scopus 로고
    • DbSNP: The NCBI database of genetic variation
    • Sherry, S.T. et al. (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res., 29, 308-311.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 308-311
    • Sherry, S.T.1
  • 10
    • 77951820899 scopus 로고    scopus 로고
    • Fast and SNP-tolerant detection of complex variants and splicing in short reads
    • Wu, T.D. and Nacu, S. (2010) Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics, 26, 873-881.
    • (2010) Bioinformatics , vol.26 , pp. 873-881
    • Wu, T.D.1    Nacu, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.