메뉴 건너뛰기




Volumn 62, Issue 3, 2013, Pages 479-489

The tree of life: Metaphor, model, and heuristic device

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MODEL; EVOLUTION; LEARNING; LITERATURE; PHYLOGENY; REVIEW;

EID: 84876243684     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/sys115     Document Type: Review
Times cited : (46)

References (114)
  • 1
    • 70049087749 scopus 로고    scopus 로고
    • Gene transfer and diversification of microbial eukaryotes
    • Andersson J.O. 2009. Gene transfer and diversification of microbial eukaryotes. Annu. Rev. Microbiol. 63:177-193.
    • (2009) Annu. Rev. Microbiol. , vol.63 , pp. 177-193
    • Andersson, J.O.1
  • 3
    • 70350002068 scopus 로고    scopus 로고
    • Edward Hitchcock's pre-Darwinian (1840) "tree of Life."
    • Archibald J.D. 2009. Edward Hitchcock's pre-Darwinian (1840) "Tree of Life." J. Hist. Biol. 42:561-592.
    • (2009) J. Hist. Biol. , vol.42 , pp. 561-592
    • Archibald, J.D.1
  • 6
    • 0021025161 scopus 로고
    • A new theory on the origin and the nature of viruses
    • Bandea C. 1983. A new theory on the origin and the nature of viruses. J. Theor. Biol. 105:591-602.
    • (1983) J. Theor. Biol. , vol.105 , pp. 591-602
    • Bandea, C.1
  • 7
    • 77956011404 scopus 로고    scopus 로고
    • On the need for integrative phylogenomics, and some steps toward its creation
    • Bapteste E., Burian R.M. 2010. On the need for integrative phylogenomics, and some steps toward its creation. Biol. Philos. 25:711-736.
    • (2010) Biol. Philos. , vol.25 , pp. 711-736
    • Bapteste, E.1    Burian, R.M.2
  • 11
    • 33846839295 scopus 로고    scopus 로고
    • Concordance trees, concordance factors, and the exploration of reticulate genealogy
    • Baum D.A. 2007. Concordance trees, concordance factors, and the exploration of reticulate genealogy Taxon 56:417-426.
    • (2007) Taxon , vol.56 , pp. 417-426
    • Baum, D.A.1
  • 12
    • 82255194354 scopus 로고    scopus 로고
    • Towards an accurate identification of mosaic genes and partial horizontal gene transfers
    • Boc A., Makarenkov V. 2011. Towards an accurate identification of mosaic genes and partial horizontal gene transfers. Nucleic Acids Res. 39:e144.
    • (2011) Nucleic Acids Res. , vol.39
    • Boc, A.1    Makarenkov, V.2
  • 13
    • 77649259858 scopus 로고    scopus 로고
    • Inferring and validating horizontal gene transfer events using bipartition dissimilarity
    • Boc A., Philippe H., Makarenkov V. 2010. Inferring and validating horizontal gene transfer events using bipartition dissimilarity. Syst. Biol. 59:195-211.
    • (2010) Syst. Biol. , vol.59 , pp. 195-211
    • Boc, A.1    Philippe, H.2    Makarenkov, V.3
  • 14
    • 66449130374 scopus 로고    scopus 로고
    • Revisiting the concept of lineage in prokaryotes: A phylogenetic perspective
    • Boucher Y., Bapteste E. 2009. Revisiting the concept of lineage in prokaryotes: A phylogenetic perspective. BioEssays 31:526-536.
    • (2009) BioEssays , vol.31 , pp. 526-536
    • Boucher, Y.1    Bapteste, E.2
  • 16
    • 84959735295 scopus 로고
    • Hierarchy and reticulation in systematics
    • Bremer K., Wanntorp H.-E. 1979. Hierarchy and reticulation in systematics. Syst. Zool. 28:624-627
    • (1979) Syst. Zool. , vol.28 , pp. 624-627
    • Bremer, K.1    Wanntorp, H.-E.2
  • 17
    • 45849111485 scopus 로고    scopus 로고
    • Assumption 0 analysis:comparative phylogenetic studies in the age of complexity
    • Brooks D.R., van Veller M.G.P. 2008. Assumption 0 analysis:comparative phylogenetic studies in the age of complexity Ann. Mo. Bot. Gard. 95:201-223.
    • (2008) Ann. Mo. Bot. Gard. , vol.95 , pp. 201-223
    • Brooks, D.R.1    Van Veller, M.G.P.2
  • 18
    • 30444444371 scopus 로고    scopus 로고
    • More barrels from the viral tree of life
    • Burnett R.M. 2006. More barrels from the viral tree of life. Proc. Natl. Acad. Sci. USA 103:3-4.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 3-4
    • Burnett, R.M.1
  • 19
    • 33750105294 scopus 로고    scopus 로고
    • Viruses take center stage in cellular evolution
    • Claverie J.M. 2006. Viruses take center stage in cellular evolution. Genome Biol. 7:110.
    • (2006) Genome Biol , vol.7 , pp. 110
    • Claverie, J.M.1
  • 21
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • Dagan T., Artzy-Randrup Y., Martin W. 2008. Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc. Natl. Acad. Sci. USA 105:10039-10044.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2    Martin, W.3
  • 23
    • 78650987950 scopus 로고    scopus 로고
    • Rapid evolutionary innovation during an Archaean genetic expansion
    • David L.A., Alm E.J. 2011. Rapid evolutionary innovation during an Archaean genetic expansion. Nature 469:93-96.
    • (2011) Nature , vol.469 , pp. 93-96
    • David, L.A.1    Alm, E.J.2
  • 24
    • 65649131928 scopus 로고    scopus 로고
    • Gene tree discordance, phylogenetic inference and the multispecies coalescent
    • Degnan J.H., Rosenberg N.A. 2009. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends Ecol. Evol. 24:332-340.
    • (2009) Trends Ecol. Evol. , vol.24 , pp. 332-340
    • Degnan, J.H.1    Rosenberg, N.A.2
  • 26
    • 0033603539 scopus 로고    scopus 로고
    • Phylogenetic classification and the universal tree
    • Doolittle W.F. 1999. Phylogenetic classification and the universal tree. Science 284:2124-2128.
    • (1999) Science , vol.284 , pp. 2124-2128
    • Doolittle, W.F.1
  • 27
    • 77956237688 scopus 로고    scopus 로고
    • The attempt on the life of the Tree of Life:science, philosophy and politics
    • Doolittle W.F. 2010. The attempt on the life of the Tree of Life:science, philosophy and politics. Biol. Philos. 25:455-473.
    • (2010) Biol. Philos. , vol.25 , pp. 455-473
    • Doolittle, W.F.1
  • 28
    • 33847790997 scopus 로고    scopus 로고
    • Pattern pluralism and the tree of life hypothesis
    • Doolittle W.F., Bapteste E. 2007. Pattern pluralism and the tree of life hypothesis. Proc. Natl. Acad. Sci. USA 104:2043-2049.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 2043-2049
    • Doolittle, W.F.1    Bapteste, E.2
  • 29
    • 58249100073 scopus 로고    scopus 로고
    • Is a new and general theory of molecular systematics emerging?
    • Edwards S.V. 2009. Is a new and general theory of molecular systematics emerging? Evolution 63(1):1-19.
    • (2009) Evolution , vol.63 , Issue.1 , pp. 1-19
    • Edwards, S.V.1
  • 31
    • 0034178257 scopus 로고    scopus 로고
    • Homology a personal view on some of the problems
    • Fitch W.M. 2000. Homology a personal view on some of the problems. Trends Genet. 16:227-231.
    • (2000) Trends Genet , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 32
    • 77951767484 scopus 로고    scopus 로고
    • Defining life: The virus viewpoint
    • Forterre P. 2010. Defining life: The virus viewpoint. Orig. Life Evol. Biosph. 40:151-160.
    • (2010) Orig. Life Evol. Biosph. , vol.40 , pp. 151-160
    • Forterre, P.1
  • 33
    • 77956012769 scopus 로고    scopus 로고
    • Trashing life's tree
    • Franklin-Hall L.R. 2010. Trashing life's tree. Biol. Philos. 25:689-709.
    • (2010) Biol. Philos. , vol.25 , pp. 689-709
    • Franklin-Hall, L.R.1
  • 34
    • 33846625056 scopus 로고    scopus 로고
    • Recombination and the nature of bacterial speciation
    • Fraser C., Hanage W.P., Spratt B.G. 2007. Recombination and the nature of bacterial speciation. Science 315:476-480.
    • (2007) Science , vol.315 , pp. 476-480
    • Fraser, C.1    Hanage, W.P.2    Spratt, B.G.3
  • 35
    • 45849138121 scopus 로고
    • Special concerns in estimating plant phylogenies
    • In:Funk V.A., Brooks D.R., editors New York: New York Botanical Garden
    • Funk V.A. 1981. Special concerns in estimating plant phylogenies. In:Funk V.A., Brooks D.R., editors. Advances in cladistics, vol. I. New York:New York Botanical Garden. p. 73-86.
    • (1981) Advances in Cladistics , vol.1 , pp. 73-86
    • Funk, V.A.1
  • 36
    • 38449096427 scopus 로고    scopus 로고
    • A model of horizontal gene transfer and the bacterial phylogeny problem
    • Galtier N. 2007. A model of horizontal gene transfer and the bacterial phylogeny problem. Syst. Biol. 56:633-642.
    • (2007) Syst. Biol. , vol.56 , pp. 633-642
    • Galtier, N.1
  • 37
    • 45849089569 scopus 로고    scopus 로고
    • Massive horizontal gene transfer in bdelloid rotifers
    • Gladyshev E.A., Meselson M., Arkhipova I.R. 2008. Massive horizontal gene transfer in bdelloid rotifers. Science 320:1210-1213.
    • (2008) Science , vol.320 , pp. 1210-1213
    • Gladyshev, E.A.1    Meselson, M.2    Arkhipova, I.R.3
  • 38
    • 0028538351 scopus 로고
    • Which is the most conserved group of proteins? Homology-orthology, paralogy, xenology and the fusion of independent lineages
    • Gogarten J.P. 1994. Which is the most conserved group of proteins? Homology-orthology, paralogy, xenology and the fusion of independent lineages. J. Mol. Evol. 39:541-543.
    • (1994) J. Mol. Evol. , vol.39 , pp. 541-543
    • Gogarten, J.P.1
  • 39
    • 0034464472 scopus 로고    scopus 로고
    • Phylogenetic species, nested hierarchies, and character fixation
    • Goldstein P.Z., DeSalle R. 2000. Phylogenetic species, nested hierarchies, and character fixation. Cladistics 16:364-384.
    • (2000) Cladistics , vol.16 , pp. 364-384
    • Goldstein, P.Z.1    Desalle, R.2
  • 42
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M., Kishino H., Yano T. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 43
    • 0003934790 scopus 로고
    • Urbana-Champaign (IL):University of Illinois Press
    • Hennig W. 1966. Phylogenetic systematics. Urbana-Champaign (IL):University of Illinois Press.
    • (1966) Phylogenetic Systematics
    • Hennig, W.1
  • 44
    • 84943242686 scopus 로고
    • Homology in molecular biology
    • In:Hall B.K., editor San Diego (CA): Academic Press.
    • Hillis D.M. 1994. Homology in molecular biology In:Hall B.K., editor. Homology: The hierarchical basis of comparative biology San Diego (CA):Academic Press. p. 339-368.
    • (1994) Homology: The Hierarchical Basis of Comparative Biology , pp. 339-368
    • Hillis, D.M.1
  • 45
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • In: Munro H.N, editor New York: Academic Press
    • Jukes T.H., Cantor C.R. 1969. Evolution of protein molecules. In:Munro H.N, editor. Mammalian protein metabolism. New York:Academic Press. p. 21-123.
    • (1969) Mammalian Protein Metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 46
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling P.J., Palmer J.D. 2008. Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9:605-618.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 48
    • 34248223568 scopus 로고    scopus 로고
    • Evolution of glyoxylate cycle enzymes in metazoa:evidence of multiple horizontal transfer events and pseudogene formation
    • Kondrashov F.A., Koonin E.V., Morgunov I.G., Finogenova T.V., Kondrashova M.N 2006. Evolution of glyoxylate cycle enzymes in metazoa:evidence of multiple horizontal transfer events and pseudogene formation. Biol. Direct 1:31.
    • (2006) Biol. Direct , vol.1 , pp. 31
    • Kondrashov, F.A.1    Koonin, E.V.2    Morgunov, I.G.3    Finogenova, T.V.4    Kondrashova, M.N.5
  • 49
    • 78349261263 scopus 로고    scopus 로고
    • The common ancestry of life
    • Koonin E.V., Wolf Y.I. 2010. The common ancestry of life. Biol. Direct 5:64.
    • (2010) Biol. Direct , vol.5 , pp. 64
    • Koonin, E.V.1    Wolf, Y.I.2
  • 50
    • 70450277249 scopus 로고    scopus 로고
    • Identifying hybridization events in the presence of coalescence via model selection
    • Kubatko L.S. 2009. Identifying hybridization events in the presence of coalescence via model selection. Syst. Biol. 58:478-488.
    • (2009) Syst. Biol. , vol.58 , pp. 478-488
    • Kubatko, L.S.1
  • 51
    • 56449101000 scopus 로고    scopus 로고
    • The Apicomplexan whole genome phylogeny:an analysis of incongruence among gene trees
    • Kuo C.-H., Wares J.P., Kissinger J.C. 2008. The Apicomplexan whole genome phylogeny:an analysis of incongruence among gene trees. Mol. Biol. Evol. 25:2689-2698.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2689-2698
    • Kuo, C.-H.1    Wares, J.P.2    Kissinger, J.C.3
  • 52
  • 53
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree of Life (iTOL):an online tool for phylogenetic tree display and annotation
    • Letunic I., Bork P. 2007. Interactive Tree Of Life (iTOL):an online tool for phylogenetic tree display and annotation. Bioinformatics 23:127-128.
    • (2007) Bioinformatics , vol.23 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 54
    • 33846994035 scopus 로고    scopus 로고
    • In the beginning was the word (a book review)
    • Lewontin R.C. 2001. In the beginning was the word (a book review). Science 291:1263-1264.
    • (2001) Science , vol.291 , pp. 1263-1264
    • Lewontin, R.C.1
  • 56
    • 67651213752 scopus 로고    scopus 로고
    • Yet viruses cannot be included in the tree of life
    • López-García P., Moreira D. 2009. Yet viruses cannot be included in the tree of life. Nat. Rev. Microbiol. 7:615-617
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 615-617
    • López-García, P.1    Moreira, D.2
  • 57
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison W P. 1997. Gene trees in species trees. Syst. Biol. 46:523-536.
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 58
    • 49649114608 scopus 로고    scopus 로고
    • Hybridization, ecological races and the nature of species:empirical evidence for the ease of speciation
    • Mallet J. 2008. Hybridization, ecological races and the nature of species:empirical evidence for the ease of speciation. Phil. Trans. R. Soc. B 363:2971-2986.
    • (2008) Phil. Trans. R. Soc. B , vol.363 , pp. 2971-2986
    • Mallet, J.1
  • 59
    • 34248179124 scopus 로고    scopus 로고
    • The role of laterally transferred genes in adaptive evolution
    • Marri P.R., Hao W., Golding G.B. 2007. The role of laterally transferred genes in adaptive evolution. BMC Evol. Biol. 7(Suppl 1):S8.
    • (2007) BMC Evol. Biol. , vol.7 , Issue.SUPPL. 1
    • Marri, P.R.1    Hao, W.2    Golding, G.B.3
  • 60
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W., Rujan T., Richly E., Hansen A., Cornelsen S., Lins T., Leister D., Stoebe B., Hasegawa M., Penny D. 2002. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99:12246-12251.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 61
    • 84863827513 scopus 로고    scopus 로고
    • Proving universal common ancestry with similar sequences
    • Martins L., Posada D. 2012. Proving universal common ancestry with similar sequences. Trends Evol. Biol. 4:e5
    • (2012) Trends Evol. Biol. , vol.4
    • Martins, L.1    Posada, D.2
  • 62
    • 0000924146 scopus 로고
    • Hybrids and phylogenetic systematics i Patterns of character expression in hybrids and their implications for cladistic analysis
    • McDade L.A. 1990. Hybrids and phylogenetic systematics I. Patterns of character expression in hybrids and their implications for cladistic analysis. Evolution 44:1685-1700.
    • (1990) Evolution , vol.44 , pp. 1685-1700
    • McDade, L.A.1
  • 63
    • 0000247566 scopus 로고
    • Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis
    • McDade L.A. 1992. Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis. Evolution 46:1329-1346.
    • (1992) Evolution , vol.46 , pp. 1329-1346
    • McDade, L.A.1
  • 64
    • 43049090907 scopus 로고    scopus 로고
    • The prokaryotic tree of life:past, present and future?
    • McInerney J.O., Cotton J.A., Pisani D. 2008. The prokaryotic tree of life:past, present and future? Trends Ecol. Evol. 23:276-281.
    • (2008) Trends Ecol. Evol. , vol.23 , pp. 276-281
    • McInerney, J.O.1    Cotton, J.A.2    Pisani, D.3
  • 65
  • 66
    • 58249136809 scopus 로고    scopus 로고
    • Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
    • Meng C., Kubatko L.S. 2009. Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model. Theor. Popul. Biol. 75:35-45.
    • (2009) Theor. Popul. Biol. , vol.75 , pp. 35-45
    • Meng, C.1    Kubatko, L.S.2
  • 68
    • 0026787534 scopus 로고
    • Phylogenetic consequences of symbioses:Eukarya and Eubacteria are non-monophyletic taxa
    • Mindell D.P. 1992. Phylogenetic consequences of symbioses:Eukarya and Eubacteria are non-monophyletic taxa. BioSystems 27:53-62.
    • (1992) BioSystems , vol.27 , pp. 53-62
    • Mindell, D.P.1
  • 70
    • 79959471083 scopus 로고    scopus 로고
    • Viruses and the tree of life
    • In: Cracraft J., Donoghue M.J., editors New York:Oxford University Press
    • Mindell D.P., Rest J.S., Villarreal L.P. 2004. Viruses and the tree of life. In:Cracraft J., Donoghue M.J., editors. Assembling the tree of life. New York:Oxford University Press. p. 107-118.
    • (2004) Assembling the Tree of Life , pp. 107-118
    • Mindell, D.P.1    Rest, J.S.2    Villarreal, L.P.3
  • 71
    • 0001904414 scopus 로고    scopus 로고
    • The phylogenetic species concept:monophyly, apomorphy, and phylogenetic species concepts
    • In: Wheeler Q.D., Meier R., editors New York:Columbia University Press
    • Mishler B.D., Theriot E.C. 2000. The phylogenetic species concept:monophyly, apomorphy, and phylogenetic species concepts. In:Wheeler Q.D., Meier R., editors. Species concepts and phylogenetic theory. New York:Columbia University Press. p. 119-132.
    • (2000) Species Concepts and Phylogenetic Theory , pp. 119-132
    • Mishler, B.D.1    Theriot, E.C.2
  • 72
    • 63249112982 scopus 로고    scopus 로고
    • Ten reasons to exclude viruses from the tree of life
    • Moreira D., López-García P. 2009. Ten reasons to exclude viruses from the tree of life. Nat. Rev. Microbiol. 7:306-311.
    • (2009) Nat. Rev. Microbiol. , vol.7 , pp. 306-311
    • Moreira, D.1    López-García, P.2
  • 74
    • 84885468196 scopus 로고    scopus 로고
    • Article collection:beyond the tree of life
    • O'Malley M.A., Boucher Y., editors. 2011. Article collection:beyond the tree of life. Biol. Direct. 6. Available at http://www.biology-direct.com/ series/tree-of-life.
    • (2011) Biol. Direct. , pp. 6
    • O'Malley, M.A.1    Boucher, Y.2
  • 75
    • 79959645799 scopus 로고    scopus 로고
    • How stands the Tree of Life a century and a half after the Origin?
    • O'Malley M.A., Koonin E.V. 2011. How stands the Tree of Life a century and a half after The Origin? Biol. Direct 6:32.
    • (2011) Biol. Direct , vol.6 , pp. 32
    • O'Malley, M.A.1    Koonin, E.V.2
  • 78
    • 79960926657 scopus 로고    scopus 로고
    • Darwin's theory of descent with modification, versus the biblical tree of life
    • Penny D. 2011. Darwin's theory of descent with modification, versus the biblical tree of life. PLoS Biol. 9:e1001096.
    • (2011) PLoS Biol. , vol.9
    • Penny, D.1
  • 79
    • 34547751897 scopus 로고    scopus 로고
    • Supertrees disentangle the chimerical origin of eukaryotic genomes
    • Pisani D., Cotton J.A., McInerney J.O. 2007. Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol. Biol. Evol. 24:1752-1760.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1752-1760
    • Pisani, D.1    Cotton, J.A.2    McInerney, J.O.3
  • 80
    • 33750437728 scopus 로고    scopus 로고
    • Widespread discordance of gene trees with species tree in Drosophila:evidence for incomplete lineage sorting
    • Pollard D.A., Iyer V.N., Moses A.M., Eisen M.B. 2006. Widespread discordance of gene trees with species tree in Drosophila:evidence for incomplete lineage sorting. PLoS Genet. 2:e173.
    • (2006) PLoS Genet. , vol.2
    • Pollard, D.A.1    Iyer, V.N.2    Moses, A.M.3    Eisen, M.B.4
  • 81
    • 68149093715 scopus 로고    scopus 로고
    • Search for a Tree of Life in the thicket of the phylogenetic forest
    • Puigbo P., Wolf Y.I., Koonin E.V. 2009. Search for a Tree of Life in the thicket of the phylogenetic forest. J. Biol. 8:59.
    • (2009) J. Biol. , vol.8 , pp. 59
    • Puigbo, P.1    Wolf, Y.I.2    Koonin, E.V.3
  • 82
    • 72549098208 scopus 로고    scopus 로고
    • Trees and networks before and after Darwin
    • Ragan M.A. 2009. Trees and networks before and after Darwin. Biol. Direct 4:43.
    • (2009) Biol. Direct , vol.4 , pp. 43
    • Ragan, M.A.1
  • 83
    • 67651046208 scopus 로고    scopus 로고
    • The network of lifegenome beginnings and evolution
    • Ragan M.A., McInerney J.O., Lake J.A. 2009. The network of life:genome beginnings and evolution. Phil. Trans. R. Soc. Lond. B 364:2169-2185.
    • (2009) Phil Trans R Soc Lond B , vol.364 , pp. 2169-2185
    • Ragan, M.A.1    McInerney, J.O.2    Lake, J.A.3
  • 86
    • 33748455342 scopus 로고    scopus 로고
    • Evolution of filamentous plant pathogens:gene exchange across eukaryotic kingdoms
    • Richards T.A., Dacks J.B., Jenkinson J.M., Thornton C.R., Talbot NJ. 2006. Evolution of filamentous plant pathogens:gene exchange across eukaryotic kingdoms. Curr. Biol. 16:1857-1864.
    • (2006) Curr. Biol. , vol.16 , pp. 1857-1864
    • Richards, T.A.1    Dacks, J.B.2    Jenkinson, J.M.3    Thornton, C.R.4    Talbot, N.J.5
  • 87
    • 34447621988 scopus 로고    scopus 로고
    • The nature of parsimony and instrumentalism in systematics
    • Rieppel O. 2007. The nature of parsimony and instrumentalism in systematics. J. Zool. Syst. Evol. Res. 45:177-183.
    • (2007) J. Zool. Syst. Evol. Res. , vol.45 , pp. 177-183
    • Rieppel, O.1
  • 88
    • 78650776623 scopus 로고    scopus 로고
    • Willi Hennig's dichotomization of nature
    • Rieppel O. 2011. Willi Hennig's dichotomization of nature. Cladistics 27:103-112.
    • (2011) Cladistics , vol.27 , pp. 103-112
    • Rieppel, O.1
  • 93
    • 41049109535 scopus 로고    scopus 로고
    • Lateral transfer of the gene for a widely used marker, alpha-tubulin, indicated by a milti-protein study of the phylogenetic position of Andalucia (Excavata)
    • Simpson A.G., Perley T.A., Lara E. 2008. Lateral transfer of the gene for a widely used marker, alpha-tubulin, indicated by a milti-protein study of the phylogenetic position of Andalucia (Excavata). Mol. Phylogenet. Evol. 47:366-377.
    • (2008) Mol. Phylogenet. Evol. , vol.47 , pp. 366-377
    • Simpson, A.G.1    Perley, T.A.2    Lara, E.3
  • 94
    • 41549141861 scopus 로고    scopus 로고
    • Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: A phylogenetic study
    • Slot J.C., Hibbett D.S. 2007. Horizontal transfer of a nitrate assimilation gene cluster and ecological transitions in fungi: A phylogenetic study. PLoS ONE 2:e1097
    • (2007) PLoS ONE , vol.2
    • Slot, J.C.1    Hibbett, D.S.2
  • 95
    • 67651052323 scopus 로고    scopus 로고
    • The role of hybridization in plant speciation
    • Soltis P.S., Soltis D.E. 2009. The role of hybridization in plant speciation. Ann. Rev. Plant Biol. 60:561-588.
    • (2009) Ann. Rev. Plant Biol. , vol.60 , pp. 561-588
    • Soltis, P.S.1    Soltis, D.E.2
  • 96
    • 2642629481 scopus 로고
    • Augustin Augier's Arbre Botanique' (1801), a remarkable early botanical representation of the natural system
    • Stevens P.F. 1983. Augustin Augier's Arbre Botanique' (1801), a remarkable early botanical representation of the natural system. Taxon 32:203-211.
    • (1983) Taxon , vol.32 , pp. 203-211
    • Stevens, P.F.1
  • 97
    • 20444410815 scopus 로고    scopus 로고
    • Stochastic models for horizontal gene transfer:taking a random walk through tree space
    • Suchard M.A. 2005. Stochastic models for horizontal gene transfer:taking a random walk through tree space. Genetics 170:419-431.
    • (2005) Genetics , vol.170 , pp. 419-431
    • Suchard, M.A.1
  • 98
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen M. 2012. Evolutionary implications of horizontal gene transfer. Annu. Rev. Genet. 46:341-358.
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 99
    • 79953647279 scopus 로고    scopus 로고
    • Trees before and after Darwin
    • Tassy P. 2011. Trees before and after Darwin. J. Zool. Syst. Evol. Res. 49:89-101.
    • (2011) J. Zool. Syst. Evol. Res. , vol.49 , pp. 89-101
    • Tassy, P.1
  • 100
    • 34250380386 scopus 로고    scopus 로고
    • Confounding factors in HGT detection:statistical error, coalescent effects, and multiple solutions
    • Than C., Ruths D., Innan H., Nakhleh L. 2007. Confounding factors in HGT detection:statistical error, coalescent effects, and multiple solutions. J. Comput. Biol. 14:517-535.
    • (2007) J. Comput. Biol. , vol.14 , pp. 517-535
    • Than, C.1    Ruths, D.2    Innan, H.3    Nakhleh, L.4
  • 101
    • 77952332096 scopus 로고    scopus 로고
    • A formal test of the theory of universal common ancestry
    • Theobald D.L. 2010. A formal test of the theory of universal common ancestry Nature 465:219-223.
    • (2010) Nature , vol.465 , pp. 219-223
    • Theobald, D.L.1
  • 102
    • 82055175876 scopus 로고    scopus 로고
    • On universal common ancestry, sequence similarity, and phylogenetic structure: The sins of P-values and the virtues of Bayesian evidence
    • Theobald D.L. 2011. On universal common ancestry, sequence similarity, and phylogenetic structure: The sins of P-values and the virtues of Bayesian evidence. Biol. Direct 6:60.
    • (2011) Biol. Direct , vol.6 , pp. 60
    • Theobald, D.L.1
  • 103
    • 77956300636 scopus 로고    scopus 로고
    • Species, genes, and the tree of life
    • Velasco J.D. 2010. Species, genes, and the tree of life. Brit. J. Phil. Sci. 61:599-619.
    • (2010) Brit. J. Phil. Sci. , vol.61 , pp. 599-619
    • Velasco, J.D.1
  • 104
    • 77949266054 scopus 로고    scopus 로고
    • Viruses are essential agents within the roots and stem of the tree of life
    • Villarreal L.P., Witzany G. 2010. Viruses are essential agents within the roots and stem of the tree of life. J. Theor. Biol. 262:698-710.
    • (2010) J. Theor. Biol. , vol.262 , pp. 698-710
    • Villarreal, L.P.1    Witzany, G.2
  • 106
    • 79959201884 scopus 로고    scopus 로고
    • Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses
    • Williams T.A., Embley T.M., Heinz E. 2011b. Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. PLoS ONE 6(6):e21080.
    • (2011) PLoS ONE , vol.6 , Issue.6
    • Williams, T.A.1    Embley, T.M.2    Heinz, E.3
  • 107
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese C.R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 109
    • 20044385937 scopus 로고    scopus 로고
    • PACT: A simple and efficient algorithm for generating area cladograms
    • Wojcicki M., Brooks D.R. 2005. PACT: A simple and efficient algorithm for generating area cladograms. J. Biogeogr. 32:755-774.
    • (2005) J. Biogeogr. , vol.32 , pp. 755-774
    • Wojcicki, M.1    Brooks, D.R.2
  • 110
    • 79952806659 scopus 로고    scopus 로고
    • Stalking the fourth domain in metagenomic data:searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees
    • Wu D., Wu M., Halpern A., Rusch D.B., Yooseph S., Frazier M., Venter J.C., Eisen J.A. 2011. Stalking the fourth domain in metagenomic data:searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees. PLoS ONE 6:e18011.
    • (2011) PLoS ONE , vol.6
    • Wu, D.1    Wu, M.2    Halpern, A.3    Rusch, D.B.4    Yooseph, S.5    Frazier, M.6    Venter, J.C.7    Eisen, J.A.8
  • 111
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites:approximate methods
    • Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites:approximate methods. J. Mol. Evol. 39:306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 112
    • 78650323903 scopus 로고    scopus 로고
    • Was the universal common ancestry proved?
    • Yonezawa T., Hasegawa M. 2010. Was the universal common ancestry proved? Nature 468:E9-E9.
    • (2010) Nature , vol.468
    • Yonezawa, T.1    Hasegawa, M.2
  • 113
    • 79951575208 scopus 로고    scopus 로고
    • Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting
    • Yu Y., Than C., Degnan J.H., Nakhleh L. 2011. Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Syst. Biol. 60:138-149.
    • (2011) Syst. Biol. , vol.60 , pp. 138-149
    • Yu, Y.1    Than, C.2    Degnan, J.H.3    Nakhleh, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.