Erratum: A Versatile Medium for Cultivating Methanogenic Archaea (PLoS ONE (2013) 8:4 (e61563) DOI: 10.1371/journal.pone.0061563);A Versatile Medium for Cultivating Methanogenic Archaea

PLoS ONE

Volumn 8, Issue 4, 2013, Pages

  Khelaifia, Saber ^a   Raoult, Didier ^a   Drancourt, Michel ^a  

^a AIX MARSEILLE UNIVERSITÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

METHANE; RNA 16S;

ARTICLE; BACTERIAL GROWTH; BACTERIUM DETECTION; BACTERIUM ISOLATE; COLONY FORMING UNIT; CONTROLLED STUDY; CULTURE MEDIUM; DSMZ MEDIUM; FECES MICROFLORA; INCUBATION TIME; INOCULATION; MESOPHILE; METHANOBACTERIUM BEIJINGENSE; METHANOGENIC ARCHAEON; METHANOSAETA CONCILII; NONHUMAN; RNA SEQUENCE; SAB MEDIUM; SEQUENCE HOMOLOGY; SPECIES CULTIVATION;

EID: 84876237326     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0278740     Document Type: Erratum

References (37)

1. Hungate RE, (1969) Roll-tube method for the cultivation of strict anaerobes. Method Microbiol 3B: 117-32.
2. Miller TL, Wolin MJ, (1974) A serum bottle modification of Hungate technique for cultiving obligate anaerobes. Appl Microbiol 27: 985-7.
3. Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M, (2012) Methanomassiliicocus luminyensis, gen. nov., sp. nov., isolated from the human gut microbiota. Int J Syst Evol Micr 62: 1902-7.
4. Ferrari A, Brusa T, Rutili A, Canzi E, Biavati B, (1994) Isolation and characterization Methanobrevibacter oralis sp. nov. Curr Microbiol 29: 7-12.
5. Patel GB, Sprott GD, (1990) Methanosaeta concilii gen. nov., sp. nov. (Methanothrix concilii) and Methanosaeta thermoacetophila nom. rev., comb. nov. Int J Syst Bacteriol 40: 79-82.
6. Ma K, Liu X, Dong X, (2005) Methanobacterium beijingense sp. nov., a novel methanogen isolated from anaerobic digesters. Int J Syst Evol Micr 55: 325-9.
7. Miller TL, Wolin MJ, de Macario EC, Macario AJ, (1982) Isolation of Methanobrevibacter smithii from human feces. Appl Environ Microbiol 43: 227-32.
8. Miller TL, Wolin MJ, (1985) Methanosphaera stadtmaniae gen. nov., sp. nov.: a species that forms methane by reducing methanol with hydrogen. Arch Microbiol 141: 116-22.
9. Wolfe RS, Metcalf WW, (2010) A vacuum-vortex technique for preparation of anoxic solutions or liquid culture media in small volumes for cultivating methanogens or other strict anaerobes. Anaerobe 16: 216-9.
10. Dridi B, Raoult D, Drancourt M, (2011) Archaea as emerging organisms in complex human microbiomes. Anaerobe 17: 56-63.
11. Murray PA, Zinder SH, (1985) Nutritional requirements of Methanosarcina sp. strain TM-1. Appl Environ Microbiol 50: 49-55.
12. Asakawa S, Morii H, Akagawa-Matsushita M, Koga Y, Hayano K, (1993) Characterization of Methanobrevibacter arboriphilicus SA isolated from a paddy field soil and DNA-DNA hybridization among M. arboriphilicus strains. Int J Syst Bactriol 43: 683-6.
13. Fricke WF, Seedorf H, Henne A, Krüer M, Liesegang H, et al. (2006) The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. J Bacteriol 188: 642-58.
14. Dridi B, Khelaifia S, Fardeau ML, Ollivier B, Drancourt M, (2012) Tungsten-enhanced growth of Methanosphaera stadtmanae. BMC Res Notes 5: 238.
15. Scherer P, Sahm H, (1981) Effect of trace elements and vitamins on the growth of Methanosarcina barkeri. Acta Biotechnol 1: 57-65.
16. Tanner RS, Wolfe RS, (1988) Nutritional requirements of Methanomicrobium mobile. Appl Environ Microbiol 54: 625-8.
17. Diekert G, Konheiser U, Piechulla K, Thauer RK, (1981) Nickel requirement and factor F430 content of methanogenic bacteria. J Bacteriol 148: 459-64.
18. Hammel KE, Cornwell KL, Diekert GB, Thauer RK, (1984) Evidence for a nickel-containing carbon monoxide dehydrogenase in Methanobrevibacter arboriphilicus. J Bacteriol 157: 975-8.
19. Belay N, Mukhopadhyay B, Conway de Macario E, Galask R, Daniels L, (1990) Methanogenic bacteria in human vaginal samples. J Clin Microbiol 28: 1666-8.
20. Conway de Macario E, Macario AJL, (2009) Methanogenic archaea in health and disease: A novel paradigm of microbial pathogenesis. Int J Med Microbiol 299: 99-108.
21. Zhang H, DiBaise JK, Zuccolo A, Kudrna D, Braidotti M, et al. (2009) Human gut microbiota in obesity and after gastric bypass. P Natl Acad Sci USA 106: 2365-70.
22. Bringuier A, Khelaifia S, Richet H, Aboudharam G, Drancourt M (2012) Real-time PCR quantification of Methanobrevibacter oralis in periodontitis. J Clin Microbiol in-press.
23. Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, et al. (2004) Methanogenic archaea and human periodontal disease. P Natl Acad Sci USA 101: 6176-81.
24. Yamabe K, Maeda H, Kokeguchi S, Tanimoto I, Sonoi N, et al. (2008) Distribution of archaea in Japanese patients with periodontitis and humoral immune response to the components. FEMS Microbiol Lett 287: 69-75.
25. Rother M, Metcalf WW, (2004) Anaerobic growth of Methanosarcina acetivorans C2A on carbon monoxide: An unusual way of life for a methanogenic archaeon. P Natl Acad Sci USA 101: 16929-34.
26. Bryant MP, Tzeng SF, Robinson IM, Joyner AE (1971) Nutrient requirements of methanogenic bacteria. In: Anaerobic Biological Treatment Processes. American Chemical Society. 23-40.
27. Hartzell PL, Wolfe RS, (1986) Requirement of the nickel tetrapyrrole F430 for in vitro methanogenesis: reconstitution of methylreductase component C from its dissociated subunits. P Natl Acad Sci USA 83: 6726-30.
28. Hensgens CMH, Nienhuis-Kuiper ME, Hansen TA, (1994) Effects of tungstate on the growth of Desulfovibrio gigas NCIMB 9332 and other sulfate-reducing bacteria with ethanol as a substrate. Arch Microbiol 162: 143-7.
29. Jarrell KF, Kalmokoff ML, (1988) Nutritional requirements of the methanogenic archaebacteria. Can J Microbiol 34: 557-76.
30. Moore JM, Salama NR, (2005) Mutational analysis of metronidazole resistance in Helicobacter pylori. Antimicrob Agents Ch 49: 1236-7.
31. Patel GB, Baudet C, Agnew BJ, (1988) Nutritional requirements for growth of Methanothrix concilii. Can J Microbiol 34: 73-7.
32. Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS, (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43: 260-96.
33. Bryant MP, (1972) Commentary on the Hungate technique for culture of anaerobic bacteria. Am J Clin Nutr 25: 1324-8.
34. Taylor CD, McBride BC, Wolfe RS, Bryant MP, (1974) Coenzyme M, Essential for Growth of a Rumen Strain of Methanobacterium ruminantium. J Bacteriol 120: 974-5.
35. Wang Q, Kuninobu M, Ogawa HI, Kato Y, (1999) Degradation of volatile fatty acids in highly efficient anaerobic digestion. Biomass Bioenerg 16: 407-416.
36. Tanner RS, Wolfe RS, (1988) Nutritional requirements of Methanomicrobium mobile. Appl Environ Microbiol 54: 625-8.
37. Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M, (2011) The antimicrobial resistance pattern of cultured human methanogens reflects the unique phylogenetic position of archaea. J Antimicrob Chemoth 66: 2038-44.