Lipid-induced conformational changes within the cytochrome b 6 f complex of oxygenic photosynthesis

Biochemistry

Volumn 52, Issue 15, 2013, Pages 2649-2654

  Hasan, S Saif ^a   Stofleth, Jason T ^a,b   Yamashita, Eiki ^c   Cramer, William A ^a  

^a PURDUE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c OSAKA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ANIONIC LIPIDS; CONFORMATIONAL CHANGE; CONFORMATIONAL FLEXIBILITY; CRYSTALLOGRAPHIC DISORDER; ELECTROCHEMICAL GRADIENTS; ELECTRON TRANSFER; IRON-SULFUR PROTEINS; OXYGENIC PHOTOSYNTHESIS;

PHOTOSYNTHETIC MEMBRANES; REDOX REACTIONS;

IRON COMPOUNDS;

ADENOSINE TRIPHOSPHATE; CYTOCHROME B6F; HEME; IRON SULFUR PROTEIN; LIPID;

ARTICLE; CONFORMATIONAL TRANSITION; CRYSTALLOGRAPHY; ELECTROCHEMICAL ANALYSIS; ELECTRON TRANSPORT; OXIDATION REDUCTION REACTION; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEIN PURIFICATION; STATIC ELECTRICITY;

CRYSTALLOGRAPHY, X-RAY; CYANOBACTERIA; CYTOCHROME B6F COMPLEX; IRON-SULFUR PROTEINS; LIPIDS; MODELS, MOLECULAR; PHOSPHATIDYLGLYCEROLS; PHOTOSYNTHESIS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY;

EID: 84876224296     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi301638h     Document Type: Article

References (39)

1. Schutz, M., Brugna, M., Lebrun, E., Baymann, F., Huber, R., Stetter, K. O., Hauska, G., Toci, R., Lemesle-Meunier, D., Tron, P., Schmidt, C., and Nitschke, W. (2000) Early evolution of cytochrome bc complexes J. Mol. Biol. 300, 663-675
2. 6f Complex: Similarities and Differences Photosynth. Res. 79, 25-44
3. Widger, W. R., Cramer, W. A., Herrmann, R. G., and Trebst, A. (1984) Sequence homology and structural similarity between cytochrome b of mitochondrial complex III and the chloroplast b6-f complex: Position of the cytochrome b hemes in the membrane Proc. Natl. Acad. Sci. U.S.A. 81, 674-678
4. Cramer, W. A., Hasan, S. S., and Yamashita, E. (2011) The Q cycle of cytochrome bc complexes: A structure perspective Biochim. Biophys. Acta 1807, 788-802
5. Berry, E. A., Guergova-Kuras, M., Huang, L. S., and Crofts, A. R. (2000) Structure and function of cytochrome bc complexes Annu. Rev. Biochem. 69, 1005-1075
6. Kurisu, G., Zhang, H., Smith, J. L., and Cramer, W. A. (2003) Structure of the cytochrome b6f complex of oxygenic photosynthesis: Tuning the cavity Science 302, 1009-1014
7. 6f complex Nature 426, 413-418
8. 6f complex Proc. Natl. Acad. Sci. U.S.A. 103, 69-74
9. Baniulis, D., Yamashita, E., Whitelegge, J. P., Zatsman, A. I., Hendrich, M. P., Hasan, S. S., Ryan, C. M., and Cramer, W. A. (2009) Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120 J. Biol. Chem. 284, 9861-9869
10. Yamashita, E., Zhang, H., and Cramer, W. A. (2007) Structure of the cytochrome b6f complex: Quinone analogue inhibitors as ligands of heme cn J. Mol. Biol. 370, 39-52
11. Moser, C. C., Keske, J. M., Warncke, K., Farid, R. S., and Dutton, P. L. (1992) Nature of biological electron transfer Nature 355, 796-802
12. Zhang, Z., Huang, L., Shulmeister, V. M., Chi, Y. I., Kim, K. K., Hung, L. W., Crofts, A. R., Berry, E. A., and Kim, S. H. (1998) Electron transfer by domain movement in cytochrome bc1 Nature 392, 677-684
13. Carrell, C. J., Schlarb, B. G., Bendall, D. S., Howe, C. J., Cramer, W. A., and Smith, J. L. (1999) Structure of the soluble domain of cytochrome f from the cyanobacterium Phormidium laminosum Biochemistry 38, 9590-9599
14. Martinez, S. E., Huang, D., Szczepaniak, A., Cramer, W. A., and Smith, J. L. (1994) Crystal structure of chloroplast cytochrome f reveals a novel cytochrome fold and unexpected heme ligation Structure 2, 95-105
15. 6f complex Phys. Chem. Chem. Phys. 14, 13853-13860
16. Zhang, H., Kurisu, G., Smith, J. L., and Cramer, W. A. (2003) A defined protein-detergent-lipid complex for crystallization of integral membrane proteins: The cytochrome b6f complex of oxygenic photosynthesis Proc. Natl. Acad. Sci. U.S.A. 100, 5160-5163
17. 6f complex in oxygenic photosynthesis Methods Mol. Biol. 274, 67-78
18. Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276, 307-326
19. Murshudov, G. N., Skubak, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F., and Vagin, A. A. (2011) REFMAC5 for the refinement of macromolecular crystal structures Acta Crystallogr. D67, 355-367
20. Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot Acta Crystallogr. D66, 486-501
21. Adams, P. D., Afonine, P. V., Bunkoczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: A comprehensive Python-based system for macromolecular structure solution Acta Crystallogr. D66, 213-221
22. Sobolev, V., Sorokine, A., Prilusky, J., Abola, E. E., and Edelman, M. (1999) Automated analysis of interatomic contacts in proteins Bioinformatics 15, 327-332
23. 6f complex J. Biol. Chem. 276, 38159-38165
24. Gounaris, K., Barber, J., and Harwood, J. L. (1986) The thylakoid membranes of higher plant chloroplasts Biochem. J. 237, 313-326
25. Gounaris, K., Sundby, C., Andersson, B., and Barber, J. (1983) Lateral heterogeneity of polar lipids in the thylakoid membranes of spinach chloroplasts FEBS Lett. 156, 170-174
26. 1 complex: Role of the iron sulfur protein and its mobility Biochemistry 38, 15791-15806
27. Hasan, S. S., Yamashita, E., Ryan, C. M., Whitelegge, J. P., and Cramer, W. A. (2011) Conservation of lipid functions in cytochrome bc complexes J. Mol. Biol. 414, 145-162
28. de Vitry, C., Ouyang, Y., Finazzi, G., Wollman, F. A., and Kallas, T. (2004) The chloroplast Rieske iron-sulfur protein. At the crossroad of electron transport and signal transduction J. Biol. Chem. 279, 44621-44627
29. Lange, C., Nett, J. H., Trumpower, B. L., and Hunte, C. (2001) Specific roles of protein-phospholipid interactions in the yeast cytochrome bc1 complex structure EMBO J. 20, 6591-6600
30. Palsdottir, H. and Hunte, C. (2004) Lipids in membrane protein structures Biochim. Biophys. Acta 1666, 2-18
31. Jones, M. R. (2007) Lipids in photosynthetic reaction centres: Structural roles and functional holes Prog. Lipid Res. 46, 56-87
32. Aoki, M., Sato, N., Meguro, A., and Tsuzuki, M. (2004) Differing involvement of sulfoquinovosyl diacylglycerol in photosystem II in two species of unicellular cyanobacteria Eur. J. Biochemistry 271, 685-693
33. Sato, N. (2004) Roles of the acidic lipids sulfoquinovosyl diacylglycerol and phosphatidylglycerol in photosynthesis: Their specificity and evolution J. Plant Res. 117, 495-505
34. Minoda, A., Sato, N., Nozaki, H., Okada, K., Takahashi, H., Sonoike, K., and Tsuzuki, M. (2002) Role of sulfoquinovosyl diacylglycerol for the maintenance of photosystem II in Chlamydomonas reinhardtii Eur. J. Biochem. 269, 2353-2358
35. Fromme, P., Jordan, P., and Krauss, N. (2001) Structure of photosystem I Biochim. Biophys. Acta 1507, 5-31
36. Grotjohann, I. and Fromme, P. (2005) Structure of cyanobacterial photosystem I Photosynth. Res. 85, 51-72
37. White, S. H. and Wimley, W. C. (1999) Membrane protein folding and stability: Physical principles Annu. Rev. Biophys. Biomol. Struct. 28, 319-365
38. Yan, J. and Cramer, W. A. (2003) Functional insensitivity of the cytochrome b6f complex to structure changes in the hinge region of the Rieske iron-sulfur protein J. Biol. Chem. 278, 20925-20933
39. Solmaz, S. R. and Hunte, C. (2008) Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer J. Biol. Chem. 283, 17542-17549