Virus induced gene silencing in Lolium temulentum

Plant Cell, Tissue and Organ Culture

Volumn 113, Issue 2, 2013, Pages 163-171

  Martin, Ruth C ^a   Glover Cutter, Kira ^a   Martin, Robert R ^b   Dombrowski, James E ^a  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b HORTICULTURAL CROPS RESEARCH LABORATORY   (United States)

Author keywords

Barley stripe mosaic virus; Lolium temulentum; Phytoene desaturase; VIGS; Virus induced gene silencing

Indexed keywords

GENE EXPRESSION; GENETIC ENGINEERING; PLANTS (BOTANY); POLYMERASE CHAIN REACTION; VECTORS;

LOLIUM TEMULENTUM; MOSAIC VIRUS; PHYTOENE DESATURASE; VIGS; VIRUS-INDUCED GENE SILENCING;

VIRUSES;

AGROBACTERIUM; BARLEY STRIPE MOSAIC VIRUS; HORDEUM; LOLIUM; LOLIUM TEMULENTUM; POACEAE; RHIZOBIUM;

EID: 84876198469     PISSN: 01676857     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11240-012-0257-z     Document Type: Article

References (65)

1. Achard P, Gong F, Cheminant S, Alioua M, Hedden P, Genschik P (2008) The cold-inducible CBF1 factor-dependent signaling pathway modulates the accumulation of the growth-repressing DELLA proteins via its effect on gibberellin metabolism. Plant Cell 20: 2117-2129.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Biol 215: 403-410.
3. Atabekov JG, Novikov VK (1989) Barley stripe mosaic virus, descriptions of plant viruses, #344. Association of Applied Biologists, United Kingdom.
4. Baldwin JC, Dombrowski JE (2006) Evaluation of Lolium temulentum as a model grass species for the study of salinity stress by PCR-based subtractive suppression hybridization analysis. Plant Sci 171: 459-469.
5. Baldwin JC, Dombrowski JE, Martin RC, Banowetz GM (2007) Differentially expressed genes associated with post-harvest processing in Lolium temulentum L. Plant Sci 173: 73-83.
6. Baulcombe DC (1999) Fast forward genetics based on virus-induced gene silencing. Curr Opin Plant Biol 2: 109-113.
7. Baulcombe DC (2004) RNA silencing in plants. Nature 431: 356-363.
8. Becker A, Lange M (2010) VIGS genomics goes functional. Trends Plant Sci 15: 1-4.
9. Branco-Price C, Kaiser KA, Jang CJ, Larive CK, Bailey-Serres J (2008) Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. Plant J 56: 743-755.
10. Brostrom CO, Brostrom MA (1998) Regulation of translational initiation during cellular responses to stress. Prog Nucleic Acid Res Mol Biol 58: 79-125.
11. Brunt AA, Crabtree K, Dallwitz MJ, Gibbs AJ, Watson L, Zurcher EJ (eds) (1996) 1996 Onwards. Plant virus online: descriptions and lists from the VIDE database. Version: 20th. http://imagefdsuidahoedu/vide/refs/htm.
12. Bruun-Rasmussen M, Madsen CT, Jessing S, Albrechtsen M (2007) Stability of Barley stripe mosaic virus-induced gene silencing in barley. Mol Plant-Microbe Interact 20: 1323-1331.
13. Burch-Smith TM, Anderson JC, Martin GB, Dinesh-Kumar SP (2004) Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J 39: 734-746.
14. Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, Kubista M, Mueller R, Nolan T, Pfaffl MW, Shipley GL, Vandesompele J, Wittwer CT (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622.
15. Cakir C, Gillespie ME, Scofield SR (2010) Rapid determination of gene function by virus-induced gene silencing in wheat and barley. Crop Sci 50(Suppl_1): S-77-S-84.
16. Campbell J, Huang L (2010) Silencing of multiple genes in wheat using Barley stripe mosaic virus. J Biotech Res 2: 12-20.
17. Castelli LM, Lui J, Campbell SG, Rowe W, Zeef LA, Holmes LE, Hoyle NP, Bone J, Selley JN, Sims PF, Ashe MP (2011) Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated. Mol Biol Cell 22: 3379-3393.
18. Constantin GD, Krath BN, MacFarlane SA, Nicolaisen M, Johansen IE, Lund OS (2004) Virus-induced gene silencing as a tool for functional genomics in a legume species. Plant J 40: 622-631.
19. Dalton SJ, Bettany AJE, Timms E, Morris P (1999) Co-transformed, diploid Lolium perenne (perennial ryegrass), Lolium multiflorum (Italian ryegrass) and Lolium temulentum (darnel) plants produced by microprojectile bombardment. Plant Cell Rep 18: 721-726.
20. Demircan T, Akkaya MS (2010) Virus induced gene silencing in Brachypodium distachyon, a model organism for cereals. Plant Cell Tiss Org 100: 91-96.
21. Demmig-Adams B, Adams WW (1992) Photoprotection and other responses of plants to high light stress. Annu Rev Plant Physiol Plant Mol Biol 43: 599-626.
22. Ding XS, Schneider WL, Chaluvadi SR, Mian MAR, Nelson RS (2006) Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts. Mol Plant Microbe Interact 19: 1229-1239.
23. Dombrowski JE, Martin RC (2009) Evaluation of reference genes for quantitative RT-PCR in Lolium temulentum under abiotic stress. Plant Sci 176: 390-396.
24. Dombrowski JE, Martin RC (2012) Abiotic stresses activate a MAPkinase in the model grass species Lolium temulentum. J Plant Physiol 169: 915-919.
25. Dombrowski JE, Baldwin JC, Martin RC (2008) Cloning and characterization of a salt stress-inducible small GTPase gene from the model grass species Lolium temulentum. J Plant Physiol 165: 651-661.
26. Evans LT (1958) Lolium temulentum L., a long-day plant requiring only one inductive photocycle. Nature 182: 197-198.
27. Fitzmaurice WP, Holzberg S, Lindbo JA, Padgett HS, Palmer KE, Wolfe GM, Pogue GP (2002) Epigenetic modification of plants with systemic RNA viruses. OMICS 6: 137-151.
28. Ge YX, Cheng XF, Hopkins A, Wang ZY (2007) Generation of transgenic Lolium temulentum plants by Agrobacterium tumefaciens-mediated transformation. Plant Cell Rep 26: 783-789.
29. Hein I, Barciszewska-Pacak M, Hrubikova K, Williamson S, Dinesen M, Soenderby IE, Sundar S, Jarmolowski A, Shirasu K, Lacomme C (2005) Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiol 138: 2155-2164.
30. Holzberg S, Brosio P, Gross C, Pogue GP (2002) Barley stripe mosaic virus-induced gene silencing in a monocot plant. Plant J 30: 315-327.
31. Huang C, Qian Y, Li Z, Zhou X (2012) Virus-induced gene silencing and its application in plant functional genomics. Sci China Life Sci 55: 99-108.
32. Huff DR (1997) RAPD Characterization of heterogenous perennial ryegrass cultivars. Crop Sci 37: 557-564.
33. Kawalek A, Dmochowska-Boguta M, Nadolska-Orczyk A, Orczyk W (2012) A new BSMV-based vector with modified β molecule allows simultaneous and stable silencing of two genes. Cell Mol Biol Lett 17: 107-123.
34. King RW, Moritz T, Evans LT, Junttila O, Herlt AJ (2001) Long-day induction of flowering in Lolium temulentum involves sequential increases in specific gibberellins at the shoot apex. Plant Physiol 127: 624-632.
35. King RW, Moritz T, Evans LT, Martin J, Andersen CH, Blundell C, Kardailsky I, Chandler PM (2006) Regulation of flowering in the long-day grass Lolium temulentum by gibberellins and the FLOWERING LOCUS T gene. Plant Physiol 141: 498-507.
36. Kolliker R, Stadelmann FJ, Reidy B, Nosberger J (1999) Genetic variability of forage grass cultivars: a comparison of Festuca pratensis Huds., Lolium perenne L., and Dactylis glomerata L. Euphytica 106: 261-270.
37. Kubik C, Sawkins M, Meyer WA, Gaut BS (2001) Genetic diversity in seven perennial ryegrass (Lolium perenne L.) cultivars based on SSR markers. Crop Sci 41: 1565-1572.
38. Kumagai MH, Donson J, della-Cioppa G, Harvey D, Hanley K, Grill LK (1995) Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. Proc Natl Acad Sci USA 92: 1679-1683.
39. Lacomme C, Hrubikova K (2003) Enhancement of virus-induced gene silencing through viral-based production of inverted-repeats. Plant J 34: 543-553.
40. Lee W-S, Hammond-Kosack KE, Kanyuka K (2012) Barley stripe mosaic virus-mediated tools for investigating gene function in cereal plants and their pathogens: VIGS, HIGS and VOX. Plant Physiol. doi: 10. 1104/pp. 112. 203489.
41. Liu X, Baird WV (2003) The ribosomal small-subunit protein S28 gene from Helianthus annuus (Asteraceae) is down-regulated in response to drought, high salinity, and abscisic acid. Am J Bot 90: 526-531.
42. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25: 402-408.
43. Meng Y, Moscou MJ, Wise RP (2009) Blufensin1 negatively impacts basal defense in response to barley powdery mildew. Plant Physiol 149: 271-285.
44. Norris SR, Barrette TR, DellaPenna D (1995) Genetic dissection of carotenoid synthesis in arabidopsis defines plastoquinone as an essential component of phytoene desaturation. Plant Cell 7: 2139-2149.
45. Norris SR, Shen X, Della Penna D (1998) Complementation of the arabidopsis pds1 mutation with the gene encoding p-hydroxyphenylpyruvate dioxygenase. Plant Physiol 117: 1317-1323.
46. Pacak A, Geisler K, Jorgensen B, Barciszewska-Pacak M, Nilsson L, Nielsen T, Johansen E, Gronlund M, Jakobsen I, Albrechtsen M (2010) Investigations of Barley stripe mosaic virus as a gene silencing vector in barley roots and in Brachypodium distachyon and oat. Plant Methods 6: 26.
47. Parsyan A, Svitkin Y, Shahbazian D, Gkogkas C, Lasko P, Merrick WC, Sonenberg N (2011) mRNA helicases: the tacticians of translational control. Nat Rev Mol Cell Biol 12: 235-245.
48. Perilleux C, Bernier G (1997) Leaf carbohydrate status in Lolium temulentum during the induction of flowering. New Phytol 135: 59-66.
49. Quadrana L, Rodriguez MC, Lopez M, Bermudez L, Nunes-Nesi A, Fernie AR, Descalzo A, Asis R, Rossi M, Asurmendi S, Carrari F (2011) Coupling virus-induced gene silencing to exogenous green fluorescence protein expression provides a highly efficient system for functional genomics in Arabidopsis and across all stages of tomato fruit development. Plant Physiol 156: 1278-1291.
50. Ratcliff F, Martin-Hernandez AM, Baulcombe DC (2001) Technical Advance: tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J 25: 237-245.
51. Robertson D (2004) VIGS vectors for gene silencing: many targets, many tools. Annu Rev Plant Biol 55: 495-519.
52. Roldan-Ruiz I, Dendauw J, van Bockstaele E, Depicker A, De Loose M (2000) AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol Breed 6: 125-134.
53. Scofield SR, Brandt AS (2012) Virus-induced gene silencing in hexaploid wheat using Barley stripe mosaic virus vectors. Methods Mol Biol 894: 93-112.
54. Scofield SR, Nelson RS (2009) Resources for virus-induced gene silencing in the grasses. Plant Physiol 149: 152-157.
55. Scofield SR, Huang L, Brandt AS, Gill BS (2005) Development of a virus-induced gene-silencing system for hexaploid wheat and its use in functional analysis of the Lr21-mediated leaf rust resistance pathway. Plant Physiol 138: 2165-2173.
56. Senthil-Kumar M, Mysore KS (2011) New dimensions for VIGS in plant functional genomics. Trends Plant Sci 16: 656-665.
57. Senthil-Kumar M, Rame Gowda HV, Hema R, Mysore KS, Udayakumar M (2008) Virus-induced gene silencing and its application in characterizing genes involved in water-deficit-stress tolerance. J Plant Physiol 165: 1404-1421.
58. Singh D, Mathur SB (2004) Histopathology of seed-borne infections. CRC Press, Florida.
59. Spitsin S, Steplewski K, Fleysh N, Belanger H, Mikheeva T, Shivprasad S, Dawson W, Koprowski H, Yusibov V (1999) Expression of alfalfa mosaic virus coat protein in tobacco mosaic virus (TMV) deficient in the production of its native coat protein supports long-distance movement of a chimeric TMV. Proc Natl Acad Sci USA 96: 2549-2553.
60. Spriggs KA, Bushell M, Willis AE (2010) Translational regulation of gene expression during conditions of cell stress. Mol Cell 40: 228-237.
61. van der Linde K, Kastner C, Kumlehn J, Kahmann R, Doehlemann G (2011) Systemic virus-induced gene silencing allows functional characterization of maize genes during biotrophic interaction with Ustilago maydis. New Phytol 189: 471-483.
62. Wang ZY, Scott M, Hopkins A (2002) Plant regeneration from embryogenic cell suspension cultures of Lolium temulentum. In Vitro Cell Dev-Pl 38: 446-450.
63. Wang ZY, Ge YX, Mian R, Baker J (2005) Development of highly tissue culture responsive lines of Lolium temulentum by anther culture. Plant Sci 168: 203-211.
64. Yuan JS, Reed A, Chen F, Stewart CN Jr (2006) Statistical analysis of real-time PCR data. BMC Bioinformatics 7: 85.
65. Yuan C, Li C, Yan L, Jackson AO, Liu Z, Han C, Yu J, Li D (2011) A high throughput Barley stripe mosaic virus vector for virus induced gene silencing in monocots and dicots. PLoS ONE 6: e26468.