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Volumn 13, Issue 3, 2013, Pages 225-227

Next-generation sequencing in clinical microbiology

Author keywords

diagnostics; infectious disease; medical microbiology; next generation sequencing; translational medicine

Indexed keywords

ANTIBIOTIC RESISTANCE; BACTERIAL INFECTION; COST EFFECTIVENESS ANALYSIS; DIAGNOSTIC TEST; HEPATITIS B VIRUS; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS; LABORATORY AUTOMATION; LABORATORY DIAGNOSIS; MICROBIOLOGY; MYCOSIS; NEXT GENERATION SEQUENCING; PARASITOSIS; REVIEW; SEQUENCE ANALYSIS; VIRUS INFECTION; VIRUS RESISTANCE;

EID: 84876110365     PISSN: 14737159     EISSN: 17448352     Source Type: Journal    
DOI: 10.1586/erm.13.8     Document Type: Review
Times cited : (13)

References (17)
  • 1
    • 84866148001 scopus 로고    scopus 로고
    • Routine use of microbial whole genome sequencing in diagnostic and public health microbiology
    • Koser CU, Ellington MJ, Cartwright EJ et al. Routine use of microbial whole genome sequencing in diagnostic and public health microbiology. PLoS Pathog. 8(8), e1002824 (2012
    • (2012) PLoS Pathog , vol.8 , Issue.8
    • Koser, C.U.1    Ellington, M.J.2    Cartwright, E.J.3
  • 3
    • 84865179264 scopus 로고    scopus 로고
    • High-throughput bacterial genome sequencing: An embarrassment of choice, a world of opportunity
    • Loman NJ, Constantinidou C, Chan JZ et al. High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nat. Rev. Microbiol. 10(9), 599-606 (2012
    • (2012) Nat. Rev. Microbiol. , vol.10 , Issue.9 , pp. 599-606
    • Loman, N.J.1    Constantinidou, C.2    Chan, J.Z.3
  • 4
    • 84860756398 scopus 로고    scopus 로고
    • Performance comparison of benchtop high-throughput sequencing platforms
    • Loman NJ, Misra RV, Dallman TJ et al. Performance comparison of benchtop high-throughput sequencing platforms. Nat. Biotechnol. 30(5), 434-439 (2012
    • (2012) Nat. Biotechnol. , vol.30 , Issue.5 , pp. 434-439
    • Loman, N.J.1    Misra, R.V.2    Dallman, T.J.3
  • 5
    • 84865591846 scopus 로고    scopus 로고
    • A tale of three next-generation sequencing platforms: Comparison of Ion Torrent. Pacific Biosciences and Illumina MiSeq sequencers
    • Quail MA, Smith M, Coupland P et al. A tale of three next-generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13, 341 (2012
    • (2012) BMC Genomics , vol.13 , Issue.341
    • Quail, M.A.1    Smith, M.2    Coupland, P.3
  • 7
    • 84866419093 scopus 로고    scopus 로고
    • Nextgeneration and whole-genome sequencing in the diagnostic clinical microbiology laboratory
    • Dunne WM Jr, Westblade LF, Ford B. Nextgeneration and whole-genome sequencing in the diagnostic clinical microbiology laboratory. Eur. J. Clin. Microbiol. Infect. Dis. 31(8), 1719-1726 (2012
    • (2012) Eur. J. Clin. Microbiol. Infect. Dis. , vol.31 , Issue.8 , pp. 1719-1726
    • Dunne Jr., W.M.1    Westblade, L.F.2    Ford, B.3
  • 8
    • 84873467253 scopus 로고    scopus 로고
    • A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak
    • Reuter S, Harrison TG, Koser CU et al. A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak. BMJ Open 3(1), (2013
    • (2013) BMJ Open , vol.3 , Issue.1
    • Reuter, S.1    Harrison, T.G.2    Koser, C.U.3
  • 9
    • 84872417031 scopus 로고    scopus 로고
    • Using next-generation sequencing to tackle non-typhoidal Salmonella infections
    • Wain J, Keddy KH, Hendriksen RS, Rubino S. Using next-generation sequencing to tackle non-typhoidal Salmonella infections. J. Infect. Dev. Ctries. 7(1), 1-5 (2013
    • (2013) J. Infect. Dev. Ctries. , vol.7 , Issue.1 , pp. 1-5
    • Wain, J.1    Keddy, K.H.2    Hendriksen, R.S.3    Rubino, S.4
  • 10
    • 84862199752 scopus 로고    scopus 로고
    • Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak
    • Koser CU, Holden MT, Ellington MJ et al. Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. N. Engl. J. Med. 366(24), 2267-2275 (2012
    • (2012) N. Engl. J. Med. , vol.366 , Issue.24 , pp. 2267-2275
    • Koser, C.U.1    Holden, M.T.2    Ellington, M.J.3
  • 11
    • 84871702878 scopus 로고    scopus 로고
    • Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak
    • Underwood AP, Dallman T, Thomson NR et al. Public health value of next-generation DNA sequencing of enterohemorrhagic Escherichia coli isolates from an outbreak. J. Clin. Microbiol. 51(1), 232-237 (2013
    • (2013) J. Clin. Microbiol. , vol.51 , Issue.1 , pp. 232-237
    • Underwood, A.P.1    Dallman, T.2    Thomson, N.R.3
  • 12
    • 84865231395 scopus 로고    scopus 로고
    • Transforming clinical microbiology with bacterial genome sequencing
    • Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW. Transforming clinical microbiology with bacterial genome sequencing. Nat. Rev. Genet. 13(9), 601-612 (2012
    • (2012) Nat. Rev. Genet. , vol.13 , Issue.9 , pp. 601-612
    • Didelot, X.1    Bowden, R.2    Wilson, D.J.3    Peto, T.E.4    Crook, D.W.5
  • 13
    • 79960085112 scopus 로고    scopus 로고
    • Detection and resolution of Cryptosporidium species and species mixtures by genus-specific nested PCR-restriction fragment length polymorphism analysis, direct sequencing, and cloning
    • Ruecker NJ, Hoffman RM, Chalmers RM, Neumann NF. Detection and resolution of Cryptosporidium species and species mixtures by genus-specific nested PCR-restriction fragment length polymorphism analysis, direct sequencing, and cloning. Appl. Environ. Microbiol. 77(12), 3998-4007 (2011
    • (2011) Appl. Environ. Microbiol. , vol.77 , Issue.12 , pp. 3998-4007
    • Ruecker, N.J.1    Hoffman, R.M.2    Chalmers, R.M.3    Neumann, N.F.4
  • 14
    • 82555165205 scopus 로고    scopus 로고
    • Cryptic parasite revealed improved prospects for treatment and control of human cryptosporidiosis through advanced technologies
    • Jex AR, Smith HV, Nolan MJ et al. Cryptic parasite revealed improved prospects for treatment and control of human cryptosporidiosis through advanced technologies. Adv. Parasitol. 77, 141-173 (2011
    • (2011) Adv. Parasitol. , vol.77 , pp. 141-173
    • Jex, A.R.1    Smith, H.V.2    Nolan, M.J.3
  • 15
    • 84874034668 scopus 로고    scopus 로고
    • Efficient depletion of host DNA contamination in malaria clinical sequencing
    • Oyola SO, Gu Y, Manske M et al. Efficient depletion of host DNA contamination in malaria clinical sequencing. J. Clin. Microbiol. 51(3), 745-751(2012
    • (2012) J. Clin. Microbiol. , vol.51 , Issue.3 , pp. 745-751
    • Oyola, S.O.1    Gu, Y.2    Manske, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.