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Volumn 2, Issue NOV, 2011, Pages

Tests of selection in pooled case-control data: An empirical study

Author keywords

Case control framework; Sequence pooling; Tests of selection

Indexed keywords

DROSOPHILA MELANOGASTER;

EID: 84875931964     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2011.00083     Document Type: Article
Times cited : (4)

References (24)
  • 1
    • 70350176199 scopus 로고    scopus 로고
    • Frequency spectrum neutrality tests: one for all and all for one
    • Achaz, G. (2009). Frequency spectrum neutrality tests: one for all and all for one. Genetics 183, 249-258.
    • (2009) Genetics , vol.183 , pp. 249-258
    • Achaz, G.1
  • 2
    • 78349264203 scopus 로고    scopus 로고
    • A covering method for detecting genetic associations between rare variants and common phenotypes
    • doi: 10.1371/journal.pcbi.1000954
    • Bhatia, G., Bansal, V., Harismendy, O., Schork, N. J., Topol, E. J., Frazer, K., and Bafna, V. (2010). A covering method for detecting genetic associations between rare variants and common phenotypes. PLoS Comput. Biol. 6, e1000954. doi: 10.1371/journal.pcbi.1000954
    • (2010) PLoS Comput. Biol , vol.6
    • Bhatia, G.1    Bansal, V.2    Harismendy, O.3    Schork, N.J.4    Topol, E.J.5    Frazer, K.6    Bafna, V.7
  • 3
    • 77957346489 scopus 로고    scopus 로고
    • Genome-wide analysis of a long-term evolution experiment with Drosophila
    • Burke, M. K., Dunham, J. P., Shahrestani, P., Thornton, K. R., Rose, M. R., and Long, A. D. (2010). Genome-wide analysis of a long-term evolution experiment with Drosophila. Nature 467, 587-590.
    • (2010) Nature , vol.467 , pp. 587-590
    • Burke, M.K.1    Dunham, J.P.2    Shahrestani, P.3    Thornton, K.R.4    Rose, M.R.5    Long, A.D.6
  • 4
    • 34548668009 scopus 로고    scopus 로고
    • Coalescent size versus coalescent time with strong selection
    • Campbell, R. B. (2007). Coalescent size versus coalescent time with strong selection. Bull. Math. Biol. 69, 2249-2259.
    • (2007) Bull. Math. Biol. , vol.69 , pp. 2249-2259
    • Campbell, R.B.1
  • 6
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J. C., and Wu, C. I. (2000). Hitchhiking under positive Darwinian selection. Genetics 155, 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 7
    • 77954656491 scopus 로고    scopus 로고
    • Drosophila melanogaster recombination rate calculator
    • Fiston-Lavier, A. S., Singh, N. D., Lipatov, M., and Petrov, D. A. (2010). Drosophila melanogaster recombination rate calculator. Gene 463, 18-20.
    • (2010) Gene , vol.463 , pp. 18-20
    • Fiston-Lavier, A.S.1    Singh, N.D.2    Lipatov, M.3    Petrov, D.A.4
  • 8
    • 0029391126 scopus 로고
    • Statistical properties of segregating sites
    • Fu, Y. X. (1995). Statistical properties of segregating sites. Theor. Popul. Biol. 48, 172-197.
    • (1995) Theor. Popul. Biol. , vol.48 , pp. 172-197
    • Fu, Y.X.1
  • 9
    • 0037786678 scopus 로고    scopus 로고
    • Estimating mutation rate: how to count mutations
    • Fu, Y. X., and Huai, H. (2003). Estimating mutation rate: how to count mutations? Genetics 164, 797-805.
    • (2003) Genetics , vol.164 , pp. 797-805
    • Fu, Y.X.1    Huai, H.2
  • 10
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y. X., and Li, W. H. (1993). Statistical tests of neutrality of mutations. Genetics 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 11
    • 68549098191 scopus 로고    scopus 로고
    • Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA
    • Holt, K. E., Teo, Y. Y., Li, H., Nair, S., Dougan, G., Wain, J., and Parkhill, J. (2009). Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinformatics 25, 2074-2075.
    • (2009) Bioinformatics , vol.25 , pp. 2074-2075
    • Holt, K.E.1    Teo, Y.Y.2    Li, H.3    Nair, S.4    Dougan, G.5    Wain, J.6    Parkhill, J.7
  • 12
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson, R. R., Slatkin, M., and Maddison, W. P. (1992). Estimation of levels of gene flow from DNA sequence data. Genetics 132, 583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 13
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman, J. F. C. (1982). On the genealogy of large populations. J. Appl. Probab. 19, 27-43.
    • (1982) J. Appl. Probab. , vol.19 , pp. 27-43
    • Kingman, J.F.C.1
  • 14
    • 0033870603 scopus 로고    scopus 로고
    • Quantitative trait loci for life span in Drosophila melanogaster: interactions with genetic background and larval density
    • Leips, J., and Mackay, T. F. C. (2000). Quantitative trait loci for life span in Drosophila melanogaster: interactions with genetic background and larval density. Genetics 155, 1773-1788.
    • (2000) Genetics , vol.155 , pp. 1773-1788
    • Leips, J.1    Mackay, T.F.C.2
  • 15
    • 34247990255 scopus 로고
    • On the Kolmogorov-Smirnov Test for normality with mean and variance unknown
    • Lilliefors, H. (1967). On the Kolmogorov-Smirnov Test for normality with mean and variance unknown. J. Am. Stat. Assoc. 62, 399-402.
    • (1967) J. Am. Stat. Assoc. , vol.62 , pp. 399-402
    • Lilliefors, H.1
  • 16
    • 61449168010 scopus 로고    scopus 로고
    • A groupwise association test for rare mutations using a weighted sum statistic
    • doi: 10.1371/journal.pgen.1000384
    • Madsen, B. E., and Browning, S. R. (2009). A groupwise association test for rare mutations using a weighted sum statistic. PLoS Genet. 5, e1000384. doi: 10.1371/journal.pgen.1000384
    • (2009) PLoS Genet , vol.5
    • Madsen, B.E.1    Browning, S.R.2
  • 17
    • 0000775877 scopus 로고
    • The measurement of gene mutation rate in Drosophila, its high variability, and its dependence upon temperature
    • Muller, H. J. (1928). The measurement of gene mutation rate in Drosophila, its high variability, and its dependence upon temperature. Genetics 13, 279-357.
    • (1928) Genetics , vol.13 , pp. 279-357
    • Muller, H.J.1
  • 20
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 21
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson, G. A. (1975). On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7, 256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 22
    • 80051499915 scopus 로고    scopus 로고
    • Rare-variant association testing for sequencing data with the sequence kernel association test
    • Wu, M. C., Lee, S., Cai, T., Li, Y., Boehnke, M., and Lin, X. (2011). Rare-variant association testing for sequencing data with the sequence kernel association test. Am. J. Hum. Genet. 89, 82-93.
    • (2011) Am. J. Hum. Genet. , vol.89 , pp. 82-93
    • Wu, M.C.1    Lee, S.2    Cai, T.3    Li, Y.4    Boehnke, M.5    Lin, X.6
  • 24
    • 52449106053 scopus 로고    scopus 로고
    • Experimental selection for Drosophila survival in extremely low O(2) environment
    • doi: 10.1371/journal.pone.0000490
    • Zhou, D., Xue, J., Chen, J., Morcillo, P., Lambert, J. D., White, K. P., and Haddad, G. G. (2007). Experimental selection for Drosophila survival in extremely low O(2) environment. PLoS ONE 2, e490. doi: 10.1371/journal.pone.0000490
    • (2007) PLoS ONE , vol.2
    • Zhou, D.1    Xue, J.2    Chen, J.3    Morcillo, P.4    Lambert, J.D.5    White, K.P.6    Haddad, G.G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.