메뉴 건너뛰기




Volumn 8, Issue 4, 2013, Pages

Do TE activity and counteracting genome defenses, RNAi and methylation, shape the sex lives of smut fungi?

Author keywords

Gene silencing; Genome research; Plant pathogen; Sporisorium; Ustilago

Indexed keywords

FUNGI; SPORISORIUM; USTILAGO; USTILAGO HORDEI; USTILAGO MAYDIS;

EID: 84875871256     PISSN: 15592316     EISSN: 15592324     Source Type: Journal    
DOI: 10.4161/psb.23853     Document Type: Article
Times cited : (7)

References (71)
  • 1
    • 84863095607 scopus 로고    scopus 로고
    • Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements
    • PMID:22623492
    • Laurie JD, Ali S, Linning R, Mannhaupt G, Wong P, Güldener U, et al. Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements. Plant Cell 2012; 24:1733-1745. PMID:22623492; http://dx.doi.org/10.1105/tpc.112.097261.
    • (2012) Plant Cell , vol.24 , pp. 1733-1745
    • Laurie, J.D.1    Ali, S.2    Linning, R.3    Mannhaupt, G.4    Wong, P.5    Güldener, U.6
  • 2
    • 33750597877 scopus 로고    scopus 로고
    • Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
    • PMID:17080091
    • Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, et al. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 2006; 444:97-101. PMID:17080091; http://dx.doi.org/10.1038/nature05248.
    • (2006) Nature , vol.444 , pp. 97-101
    • Kämper, J.1    Kahmann, R.2    Bölker, M.3    Ma, L.J.4    Brefort, T.5    Saville, B.J.6
  • 3
    • 78650100793 scopus 로고    scopus 로고
    • Pathogenicity determinants in smut fungi revealed by genome comparison
    • PMID:21148393
    • Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, et al. Pathogenicity determinants in smut fungi revealed by genome comparison. Science 2010; 330:1546-1548. PMID:21148393; http://dx.doi.org/10.1126/science.1195330.
    • (2010) Science , vol.330 , pp. 1546-1548
    • Schirawski, J.1    Mannhaupt, G.2    Münch, K.3    Brefort, T.4    Schipper, K.5    Doehlemann, G.6
  • 4
    • 0024427598 scopus 로고
    • A natural case of RIP: Degeneration of the DNA sequence in an ancestral tandem duplication
    • PMID:2531278
    • Grayburn WS, Selker EU. A natural case of RIP: degeneration of the DNA sequence in an ancestral tandem duplication. Mol Cell Biol 1989; 9:4416-4421. PMID:2531278.
    • (1989) Mol Cell Biol , vol.9 , pp. 4416-4421
    • Grayburn, W.S.1    Selker, E.U.2
  • 5
    • 23344431640 scopus 로고    scopus 로고
    • Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum
    • PMID:15911572
    • Hood ME, Katawczik M, Giraud T. Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum. Genetics 2005; 170:1081-1089. PMID:15911572; http://dx.doi.org/10.1534/genetics.105.042564.
    • (2005) Genetics , vol.170 , pp. 1081-1089
    • Hood, M.E.1    Katawczik, M.2    Giraud, T.3
  • 6
    • 84861188156 scopus 로고    scopus 로고
    • Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi
    • PMID:22250128
    • Horns F, Petit E, Yockteng R, Hood ME. Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi. Genome Biol Evol 2012; 4:240-47. PMID:22250128; http://dx.doi.org/10.1093/gbe/evs005.
    • (2012) Genome Biol Evol , vol.4 , pp. 240-247
    • Horns, F.1    Petit, E.2    Yockteng, R.3    Hood, M.E.4
  • 8
    • 23844488722 scopus 로고    scopus 로고
    • Mating type loci of Sporisorium reilianum: Novel pattern with three a and multiple b specificities
    • PMID:16087737
    • Schirawski J, Heinze B, Wagenknecht M, Kahmann R. Mating type loci of Sporisorium reilianum: novel pattern with three a and multiple b specificities. Eukaryot Cell 2005; 4:1317-1327. PMID:16087737; http://dx.doi.org/10.1128/EC.4.8.1317-1327.2005.
    • (2005) Eukaryot Cell , vol.4 , pp. 1317-1327
    • Schirawski, J.1    Heinze, B.2    Wagenknecht, M.3    Kahmann, R.4
  • 9
    • 0028228510 scopus 로고
    • Linkage of mating-type loci distinguishes bipolar from tetrapolar mating in basidiomycetous smut fungi
    • PMID:7913746
    • Bakkeren G, Kronstad JW. Linkage of mating-type loci distinguishes bipolar from tetrapolar mating in basidiomycetous smut fungi. Proc Natl Acad Sci USA 1994; 91:7085-7089. PMID:7913746; http://dx.doi.org/10.1073/pnas.91.15.7085.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 7085-7089
    • Bakkeren, G.1    Kronstad, J.W.2
  • 10
    • 0033592862 scopus 로고    scopus 로고
    • The mating-type and pathogenicity locus of the fungus Ustilago hordei spans a 500-kb region
    • PMID:10611332
    • Lee N, Bakkeren G, Wong K, Sherwood JE, Kronstad JW. The mating-type and pathogenicity locus of the fungus Ustilago hordei spans a 500-kb region. Proc Natl Acad Sci USA 1999; 96:15026-15031. PMID:10611332; http://dx.doi.org/10.1073/pnas.96.26.15026.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 15026-15031
    • Lee, N.1    Bakkeren, G.2    Wong, K.3    Sherwood, J.E.4    Kronstad, J.W.5
  • 11
    • 33746851583 scopus 로고    scopus 로고
    • Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals
    • PMID:16793293
    • Bakkeren G, Jiang G, Warren RL, Butterfield Y, Shin H, Chiu R, et al. Mating factor linkage and genome evolution in basidiomycetous pathogens of cereals. Fungal Genet Biol 2006; 43:655-666. PMID:16793293; http://dx.doi.org/10.1016/j.fgb.2006.04.002.
    • (2006) Fungal Genet Biol , vol.43 , pp. 655-666
    • Bakkeren, G.1    Jiang, G.2    Warren, R.L.3    Butterfield, Y.4    Shin, H.5    Chiu, R.6
  • 12
    • 84866468213 scopus 로고    scopus 로고
    • The evolutionary dynamics of transposable elements in eukaryote genomes
    • PMID:22759814
    • Tollis M, Boissinot S. The evolutionary dynamics of transposable elements in eukaryote genomes. Genome Dyn 2010; 7:68-91. PMID:22759814; http://dx.doi.org/10.1159/000337126.
    • (2010) Genome Dyn , vol.7 , pp. 68-91
    • Tollis, M.1    Boissinot, S.2
  • 13
    • 0036960274 scopus 로고    scopus 로고
    • On the roles of repetitive DNA elements in the context of a unified genomic-epigenetic system
    • PMID:12547679
    • von Sternberg R. On the roles of repetitive DNA elements in the context of a unified genomic-epigenetic system. Ann N Y Acad Sci 2002; 981:154-188. PMID:12547679; http://dx.doi.org/10.1111/j.1749-6632.2002.tb04917.x.
    • (2002) Ann N Y Acad Sci , vol.981 , pp. 154-188
    • von Sternberg, R.1
  • 14
    • 19044397450 scopus 로고    scopus 로고
    • Why repetitive DNA is essential to genome function
    • PMID:15921050
    • Shapiro JA, von Sternberg R. Why repetitive DNA is essential to genome function. Biol Rev Camb Philos Soc 2005; 80:227-250. PMID:15921050; http://dx.doi.org/10.1017/S1464793104006657.
    • (2005) Biol Rev Camb Philos Soc , vol.80 , pp. 227-250
    • Shapiro, J.A.1    von Sternberg, R.2
  • 15
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • PMID:17363976
    • Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007; 8:272-285. PMID:17363976; http://dx.doi.org/10.1038/nrg2072.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 16
    • 70350459239 scopus 로고    scopus 로고
    • Noncoding RNAs: Persistent viral agents as modular tools for cellular needs
    • PMID:19845641
    • Witzany G. Noncoding RNAs: persistent viral agents as modular tools for cellular needs. Ann N Y Acad Sci 2009; 1178:244-267. PMID:19845641; http://dx.doi.org/10.1111/j.1749-6632.2009.04989.x.
    • (2009) Ann N Y Acad Sci , vol.1178 , pp. 244-267
    • Witzany, G.1
  • 17
    • 78650525750 scopus 로고    scopus 로고
    • Transposable element insertions have strongly affected human evolution
    • PMID:21041622
    • Britten RJ. Transposable element insertions have strongly affected human evolution. Proc Natl Acad Sci USA 2010; 107:19945-19948. PMID:21041622; http://dx.doi.org/10.1073/pnas.1014330107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 19945-19948
    • Britten, R.J.1
  • 18
    • 79952706183 scopus 로고    scopus 로고
    • The struggle for life of the genome's selfish architects
    • PMID:21414203
    • Hua-Van A, Le Rouzic A, Boutin TS, Filée J, Capy P. The struggle for life of the genome's selfish architects. Biol Direct 2011; 6:19. PMID:21414203; http://dx.doi.org/10.1186/1745-6150-6-19.
    • (2011) Biol Direct , vol.6 , pp. 19
    • Hua-Van, A.1    Le Rouzic, A.2    Boutin, T.S.3    Filée, J.4    Capy, P.5
  • 19
    • 84868534630 scopus 로고    scopus 로고
    • Presidential address. Transposable elements, epigenetics, and genome evolution
    • PMID:23145453
    • Fedoroff NV. Presidential address. Transposable elements, epigenetics, and genome evolution. Science 2012; 338:758-767. PMID:23145453; http://dx.doi.org/10.1126/science.338.6108.758.
    • (2012) Science , vol.338 , pp. 758-767
    • Fedoroff, N.V.1
  • 20
    • 13444296873 scopus 로고    scopus 로고
    • How repeated retroelements format genome function
    • PMID:16093662
    • von Sternberg R, Shapiro JA. How repeated retroelements format genome function. Cytogenet Genome Res 2005; 110:108-116. PMID:16093662; http://dx.doi.org/10.1159/000084942.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 108-116
    • von Sternberg, R.1    Shapiro, J.A.2
  • 21
    • 84864519955 scopus 로고    scopus 로고
    • The genomics of obligate (and nonobligate) biotrophs
    • PMID:22559067
    • Spanu PD. The genomics of obligate (and nonobligate) biotrophs. Annu Rev Phytopathol 2012; 50:91-109. PMID:22559067; http://dx.doi.org/10.1146/annurev-phyto-081211-173024.
    • (2012) Annu Rev Phytopathol , vol.50 , pp. 91-109
    • Spanu, P.D.1
  • 22
    • 84861182813 scopus 로고    scopus 로고
    • Genome evolution in filamentous plant pathogens: Why bigger can be better
    • PMID:22565130
    • Raffaele S, Kamoun S. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Microbiol 2012; 10:417-430. PMID:22565130.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 417-430
    • Raffaele, S.1    Kamoun, S.2
  • 23
    • 84860605333 scopus 로고    scopus 로고
    • How does selfing affect the dynamics of selfish transposable elements?
    • PMID:22394388
    • Boutin TS, Le Rouzic A, Capy P. How does selfing affect the dynamics of selfish transposable elements? Mob DNA 2012; 3:5. PMID:22394388; http://dx.doi.org/10.1186/1759-8753-3-5.
    • (2012) Mob DNA , vol.3 , pp. 5
    • Boutin, T.S.1    Le Rouzic, A.2    Capy, P.3
  • 24
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • PMID:15800622
    • Goddard MR, Godfray HC, Burt A. Sex increases the efficacy of natural selection in experimental yeast populations. Nature 2005; 434:636-640. PMID:15800622; http://dx.doi.org/10.1038/nature03405.
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.C.2    Burt, A.3
  • 25
    • 77952946376 scopus 로고    scopus 로고
    • The evolution of sex: A perspective from the fungal kingdom
    • PMID:20508251
    • Lee SC, Ni M, Li W, Shertz C, Heitman J. The evolution of sex: a perspective from the fungal kingdom. Microbiol Mol Biol Rev 2010; 74:298-340. PMID:20508251; http://dx.doi.org/10.1128/MMBR.00005-10.
    • (2010) Microbiol Mol Biol Rev , vol.74 , pp. 298-340
    • Lee, S.C.1    Ni, M.2    Li, W.3    Shertz, C.4    Heitman, J.5
  • 26
    • 78650630076 scopus 로고    scopus 로고
    • Evolutionary dynamics of transposable elements in a small RNA world
    • PMID:21074888
    • Blumenstiel JP. Evolutionary dynamics of transposable elements in a small RNA world. Trends Genet 2011; 27:23-31. PMID:21074888; http://dx.doi.org/10.1016/j.tig.2010.10.003.
    • (2011) Trends Genet , vol.27 , pp. 23-31
    • Blumenstiel, J.P.1
  • 27
    • 84866946845 scopus 로고    scopus 로고
    • Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice
    • PMID:23028360
    • Nosaka M, Itoh JI, Nagato Y, Ono A, Ishiwata A, Sato Y. Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice. PLoS Genet 2012; 8:e1002953. PMID:23028360; http://dx.doi.org/10.1371/journal.pgen.1002953.
    • (2012) PLoS Genet , vol.8
    • Nosaka, M.1    Itoh, J.I.2    Nagato, Y.3    Ono, A.4    Ishiwata, A.5    Sato, Y.6
  • 28
    • 78650122420 scopus 로고    scopus 로고
    • Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism
    • PMID:21148392
    • Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, et al. Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism. Science 2010; 330:1543-1546. PMID:21148392; http://dx.doi.org/10.1126/science.1194573.
    • (2010) Science , vol.330 , pp. 1543-1546
    • Spanu, P.D.1    Abbott, J.C.2    Amselem, J.3    Burgis, T.A.4    Soanes, D.M.5    Stüber, K.6
  • 29
    • 79959340303 scopus 로고    scopus 로고
    • Obligate biotrophy features unraveled by the genomic analysis of rust fungi
    • PMID:21536894
    • Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc Natl Acad Sci USA 2011; 108:9166-9171. PMID:21536894; http://dx.doi.org/10.1073/pnas.1019315108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 9166-9171
    • Duplessis, S.1    Cuomo, C.A.2    Lin, Y.C.3    Aerts, A.4    Tisserant, E.5    Veneault-Fourrey, C.6
  • 30
    • 0031832807 scopus 로고    scopus 로고
    • Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence
    • PMID:9582191
    • Kim JM, Vanguri S, Boeke JD, Gabriel A, Voytas DF. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 1998; 8:464-478. PMID:9582191.
    • (1998) Genome Res , vol.8 , pp. 464-478
    • Kim, J.M.1    Vanguri, S.2    Boeke, J.D.3    Gabriel, A.4    Voytas, D.F.5
  • 31
    • 70349281388 scopus 로고    scopus 로고
    • Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
    • PMID:19741609
    • Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, et al. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 2009; 461:393-398. PMID:19741609; http://dx.doi.org/10.1038/nature08358.
    • (2009) Nature , vol.461 , pp. 393-398
    • Haas, B.J.1    Kamoun, S.2    Zody, M.C.3    Jiang, R.H.Y.4    Handsaker, R.E.5    Cano, L.M.6
  • 32
    • 59749094857 scopus 로고    scopus 로고
    • Emerging concepts in effector biology of plant-associated organisms
    • PMID:19132864
    • Hogenhout SA, Van der Hoorn RA, Terauchi R, Kamoun S. Emerging concepts in effector biology of plant-associated organisms. Mol Plant Microbe Interact 2009; 22:115-122. PMID:19132864; http://dx.doi.org/10.1094/MPMI-22-2-0115.
    • (2009) Mol Plant Microbe Interact , vol.22 , pp. 115-122
    • Hogenhout, S.A.1    Van der Hoorn, R.A.2    Terauchi, R.3    Kamoun, S.4
  • 33
    • 78650126298 scopus 로고    scopus 로고
    • Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome
    • PMID:21148394
    • Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, et al. Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Science 2010; 330:1549-1551. PMID:21148394; http://dx.doi.org/10.1126/science.1195203.
    • (2010) Science , vol.330 , pp. 1549-1551
    • Baxter, L.1    Tripathy, S.2    Ishaque, N.3    Boot, N.4    Cabral, A.5    Kemen, E.6
  • 34
    • 0035059327 scopus 로고    scopus 로고
    • Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene
    • PMID:11332731
    • Kang S, Lebrun MH, Farrall L, Valent B. Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol Plant Microbe Interact 2001; 14:671-674. PMID:11332731; http://dx.doi.org/10.1094/MPMI.2001.14.5.671.
    • (2001) Mol Plant Microbe Interact , vol.14 , pp. 671-674
    • Kang, S.1    Lebrun, M.H.2    Farrall, L.3    Valent, B.4
  • 35
    • 33745033975 scopus 로고    scopus 로고
    • The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae
    • PMID:16507177
    • Thon MR, Pan H, Diener S, Papalas J, Taro A, Mitchell TK, et al. The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae. Genome Biol 2006; 7:R16. PMID:16507177; http://dx.doi.org/10.1186/gb-2006-7-2-r16.
    • (2006) Genome Biol , vol.7
    • Thon, M.R.1    Pan, H.2    Diener, S.3    Papalas, J.4    Taro, A.5    Mitchell, T.K.6
  • 36
    • 70449382810 scopus 로고    scopus 로고
    • Coevolution between a family of parasite virulence effectors and a class of LINE-1 retrotransposons
    • PMID:19829700
    • Sacristán S, Vigouroux M, Pedersen C, Skamnioti P, Thordal-Christensen H, Micali C, et al. Coevolution between a family of parasite virulence effectors and a class of LINE-1 retrotransposons. PLoS ONE 2009; 4:e7463. PMID:19829700; http://dx.doi.org/10.1371/journal.pone.0007463.
    • (2009) PLoS ONE , vol.4
    • Sacristán, S.1    Vigouroux, M.2    Pedersen, C.3    Skamnioti, P.4    Thordal-Christensen, H.5    Micali, C.6
  • 37
    • 84875420788 scopus 로고    scopus 로고
    • Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
    • PMID:21326234
    • Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations. Nat Commun 2011; 2:202. PMID:21326234; http://dx.doi.org/10.1038/ncomms1189.
    • (2011) Nat Commun , vol.2 , pp. 202
    • Rouxel, T.1    Grandaubert, J.2    Hane, J.K.3    Hoede, C.4    van de Wouw, A.P.5    Couloux, A.6
  • 38
    • 34247116457 scopus 로고    scopus 로고
    • Quelling: Post-transcriptional gene silencing guided by small RNAs in Neurospora crassa
    • PMID:17395524
    • Fulci V, Macino G. Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa. Curr Opin Microbiol 2007; 10:199-203. PMID:17395524; http://dx.doi.org/10.1016/j.mib.2007.03.016.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 199-203
    • Fulci, V.1    Macino, G.2
  • 39
    • 0023644245 scopus 로고
    • Rearrangement of duplicated DNA in specialized cells of Neurospora
    • PMID:2960455
    • Selker EU, Cambareri EB, Jensen BC, Haack KR. Rearrangement of duplicated DNA in specialized cells of Neurospora. Cell 1987; 51:741-752. PMID:2960455; http://dx.doi.org/10.1016/0092-8674(87)90097-3.
    • (1987) Cell , vol.51 , pp. 741-752
    • Selker, E.U.1    Cambareri, E.B.2    Jensen, B.C.3    Haack, K.R.4
  • 40
    • 0035966290 scopus 로고    scopus 로고
    • Meiotic silencing by unpaired DNA
    • PMID:11779466
    • Shiu PK, Raju NB, Zickler D, Metzenberg RL. Meiotic silencing by unpaired DNA. Cell 2001; 107:905-916. PMID:11779466; http://dx.doi.org/10.1016/S0092-8674(01)00609-2.
    • (2001) Cell , vol.107 , pp. 905-916
    • Shiu, P.K.1    Raju, N.B.2    Zickler, D.3    Metzenberg, R.L.4
  • 41
    • 78349309117 scopus 로고    scopus 로고
    • Characterizing the role of RNA silencing components in Cryptococcus neoformans
    • PMID:21067947
    • Janbon G, Maeng S, Yang DH, Ko YJ, Jung KW, Moyrand F, et al. Characterizing the role of RNA silencing components in Cryptococcus neoformans. Fungal Genet Biol 2010; 47:1070-1080. PMID:21067947; http://dx.doi.org/10.1016/j.fgb.2010.10.005.
    • (2010) Fungal Genet Biol , vol.47 , pp. 1070-1080
    • Janbon, G.1    Maeng, S.2    Yang, D.H.3    Ko, Y.J.4    Jung, K.W.5    Moyrand, F.6
  • 42
    • 78349241121 scopus 로고    scopus 로고
    • Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi
    • PMID:21078820
    • Wang X, Hsueh YP, Li W, Floyd A, Skalsky R, Heitman J. Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi. Genes Dev 2010; 24:2566-2582. PMID:21078820; http://dx.doi.org/10.1101/gad.1970910.
    • (2010) Genes Dev , vol.24 , pp. 2566-2582
    • Wang, X.1    Hsueh, Y.P.2    Li, W.3    Floyd, A.4    Skalsky, R.5    Heitman, J.6
  • 43
    • 84866147731 scopus 로고    scopus 로고
    • Transgene induced co-suppression during vegetative growth in Cryptococcus neoformans
    • PMID:22916030
    • Wang X, Wang P, Sun S, Darwiche S, Idnurm A, Heitman J. Transgene induced co-suppression during vegetative growth in Cryptococcus neoformans. PLoS Genet 2012; 8:e1002885. PMID:22916030; http://dx.doi.org/10.1371/journal.pgen.1002885.
    • (2012) PLoS Genet , vol.8
    • Wang, X.1    Wang, P.2    Sun, S.3    Darwiche, S.4    Idnurm, A.5    Heitman, J.6
  • 44
    • 20544448953 scopus 로고    scopus 로고
    • The role of heterochromatin in centromere function
    • PMID:15905142
    • Pidoux AL, Allshire RC. The role of heterochromatin in centromere function. Philos Trans R Soc Lond B Biol Sci 2005; 360:569-579. PMID:15905142; http://dx.doi.org/10.1098/rstb.2004.1611.
    • (2005) Philos Trans R Soc Lond B Biol Sci , vol.360 , pp. 569-579
    • Pidoux, A.L.1    Allshire, R.C.2
  • 46
    • 58749097426 scopus 로고    scopus 로고
    • Small RNAs in transcriptional gene silencing and genome defence
    • PMID:19158787
    • Moazed D. Small RNAs in transcriptional gene silencing and genome defence. Nature 2009; 457:413-420. PMID:19158787; http://dx.doi.org/10.1038/nature07756.
    • (2009) Nature , vol.457 , pp. 413-420
    • Moazed, D.1
  • 47
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • PMID:20142834
    • Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010; 11:204-220. PMID:20142834; http://dx.doi.org/10.1038/nrg2719.
    • (2010) Nat Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 48
    • 33646267428 scopus 로고    scopus 로고
    • Targeted gene silencing in the model mushroom Coprinopsis cinerea (Coprinus cinereus) by expression of homologous hairpin RNAs
    • PMID:16607020
    • Wälti MA, Villalba C, Buser RM, Grünler A, Aebi M, Künzler M. Targeted gene silencing in the model mushroom Coprinopsis cinerea (Coprinus cinereus) by expression of homologous hairpin RNAs. Eukaryot Cell 2006; 5:732-744. PMID:16607020; http://dx.doi.org/10.1128/EC.5.4.732-744.2006.
    • (2006) Eukaryot Cell , vol.5 , pp. 732-744
    • Wälti, M.A.1    Villalba, C.2    Buser, R.M.3    Grünler, A.4    Aebi, M.5    Künzler, M.6
  • 49
    • 0037464589 scopus 로고    scopus 로고
    • The genome sequence of the filamentous fungus Neurospora crassa
    • PMID:12712197
    • Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature 2003; 422:859-868. PMID:12712197; http://dx.doi.org/10.1038/nature01554.
    • (2003) Nature , vol.422 , pp. 859-868
    • Galagan, J.E.1    Calvo, S.E.2    Borkovich, K.A.3    Selker, E.U.4    Read, N.D.5    Jaffe, D.6
  • 50
    • 67649979510 scopus 로고    scopus 로고
    • RNA silencing in the model mycorrhizal fungus Laccaria bicolor: Gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus
    • PMID:19397683
    • Kemppainen M, Duplessis S, Martin F, Pardo AG. RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus. Environ Microbiol 2009; 11:1878-896. PMID:19397683; http://dx.doi.org/10.1111/j.1462-2920.2009.01912.x.
    • (2009) Environ Microbiol , vol.11 , pp. 1878-1896
    • Kemppainen, M.1    Duplessis, S.2    Martin, F.3    Pardo, A.G.4
  • 51
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • PMID:20395474
    • Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010; 328:916-919. PMID:20395474; http://dx.doi.org/10.1126/science.1186366.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 52
    • 84866140080 scopus 로고    scopus 로고
    • Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes
    • PMID:22984074
    • Ibarra CA, Feng X, Schoft VK, Hsieh TF, Uzawa R, Rodrigues JA, et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 2012; 337:1360-1364. PMID:22984074; http://dx.doi.org/10.1126/science.1224839.
    • (2012) Science , vol.337 , pp. 1360-1364
    • Ibarra, C.A.1    Feng, X.2    Schoft, V.K.3    Hsieh, T.F.4    Uzawa, R.5    Rodrigues, J.A.6
  • 53
    • 0037172977 scopus 로고    scopus 로고
    • A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa
    • PMID:12072568
    • Freitag M, Williams RL, Kothe GO, Selker EU. A cytosine methyltransferase homologue is essential for repeat-induced point mutation in Neurospora crassa. Proc Natl Acad Sci USA 2002; 99:8802-8807. PMID:12072568; http://dx.doi.org/10.1073/pnas.132212899.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 8802-8807
    • Freitag, M.1    Williams, R.L.2    Kothe, G.O.3    Selker, E.U.4
  • 54
    • 36749090098 scopus 로고    scopus 로고
    • Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens
    • PMID:18000048
    • Xu J, Saunders CW, Hu P, Grant RA, Boekhout T, Kuramae EE, et al. Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. Proc Natl Acad Sci USA 2007; 104:18730-18735. PMID:18000048; http://dx.doi.org/10.1073/pnas.0706756104.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18730-18735
    • Xu, J.1    Saunders, C.W.2    Hu, P.3    Grant, R.A.4    Boekhout, T.5    Kuramae, E.E.6
  • 55
    • 47049093932 scopus 로고    scopus 로고
    • Mating system of the anther smut fungus Microbotryum violaceum: Selfing under heterothallism
    • PMID:18281603
    • Giraud T, Yockteng R, López-Villavicencio M, Refrégier G, Hood ME. Mating system of the anther smut fungus Microbotryum violaceum: selfing under heterothallism. Eukaryot Cell 2008; 7:765-775. PMID:18281603; http://dx.doi.org/10.1128/EC.00440-07.
    • (2008) Eukaryot Cell , vol.7 , pp. 765-775
    • Giraud, T.1    Yockteng, R.2    López-Villavicencio, M.3    Refrégier, G.4    Hood, M.E.5
  • 56
    • 79956150568 scopus 로고    scopus 로고
    • Consequences of reproductive mode on genome evolution in fungi
    • PMID:21362492
    • Whittle CA, Nygren K, Johannesson H. Consequences of reproductive mode on genome evolution in fungi. Fungal Genet Biol 2011; 48:661-667. PMID:21362492; http://dx.doi.org/10.1016/j.fgb.2011.02.005.
    • (2011) Fungal Genet Biol , vol.48 , pp. 661-667
    • Whittle, C.A.1    Nygren, K.2    Johannesson, H.3
  • 57
    • 84861199620 scopus 로고    scopus 로고
    • Sex, outcrossing and mating types: Unsolved questions in fungi and beyond
    • PMID:22515640
    • Billiard S, López-Villavicencio M, Hood ME, Giraud T. Sex, outcrossing and mating types: unsolved questions in fungi and beyond. J Evol Biol 2012; 25:1020-1038. PMID:22515640; http://dx.doi.org/10.1111/j.1420-9101.2012.02495.x.
    • (2012) J Evol Biol , vol.25 , pp. 1020-1038
    • Billiard, S.1    López-Villavicencio, M.2    Hood, M.E.3    Giraud, T.4
  • 58
    • 40149090884 scopus 로고    scopus 로고
    • The evolution of MAT: The ascomycetes
    • In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds., D.C.: ASM Press
    • Butler G. The evolution of MAT: the ascomycetes. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds. Sex in fungi. Washington, D.C.: ASM Press, 2007:3-18.
    • (2007) Sex In Fungi. Washington , pp. 3-18
    • Butler, G.1
  • 59
    • 40149100691 scopus 로고    scopus 로고
    • Evolution of the mating-type locus: The basidiomycetes
    • In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds., Washington, D.C.: ASM Press
    • Fraser JA, Hsueh YP, Findley KM, Heitman J. Evolution of the mating-type locus: the basidiomycetes. In: Heitman J, Kronstad JW, Taylor JW, Casselton LA, eds. Sex in fungi. Washington, D.C.: ASM Press, 2007:19-34.
    • (2007) Sex In Fungi , pp. 19-34
    • Fraser, J.A.1    Hsueh, Y.P.2    Findley, K.M.3    Heitman, J.4
  • 60
    • 73549103607 scopus 로고    scopus 로고
    • Alpha3, a transposable element that promotes host sexual reproduction
    • PMID:20008928
    • Barsoum E, Martinez P, Aström SU. Alpha3, a transposable element that promotes host sexual reproduction. Genes Dev 2010; 24:33-44. PMID:20008928; http://dx.doi.org/10.1101/gad.557310.
    • (2010) Genes Dev , vol.24 , pp. 33-44
    • Barsoum, E.1    Martinez, P.2    Aström, S.U.3
  • 61
    • 84866904057 scopus 로고    scopus 로고
    • Unidirectional evolutionary transitions in fungal mating systems and the role of transposable elements
    • PMID:22593224
    • Gioti A, Mushegian AA, Strandberg R, Stajich JE, Johannesson H. Unidirectional evolutionary transitions in fungal mating systems and the role of transposable elements. Mol Biol Evol 2012; 29:3215-3226. PMID:22593224; http://dx.doi.org/10.1093/molbev/mss132.
    • (2012) Mol Biol Evol , vol.29 , pp. 3215-3226
    • Gioti, A.1    Mushegian, A.A.2    Strandberg, R.3    Stajich, J.E.4    Johannesson, H.5
  • 62
    • 0036778017 scopus 로고    scopus 로고
    • Mating-type locus of Cryptococcus neoformans: A step in the evolution of sex chromosomes
    • PMID:12455690
    • Lengeler KB, Fox DS, Fraser JA, Allen A, Forrester K, Dietrich FS, et al. Mating-type locus of Cryptococcus neoformans: a step in the evolution of sex chromosomes. Eukaryot Cell 2002; 1:704-718. PMID:12455690; http://dx.doi.org/10.1128/EC.1.5.704-718.2002.
    • (2002) Eukaryot Cell , vol.1 , pp. 704-718
    • Lengeler, K.B.1    Fox, D.S.2    Fraser, J.A.3    Allen, A.4    Forrester, K.5    Dietrich, F.S.6
  • 63
    • 5144224453 scopus 로고    scopus 로고
    • Koskella B. Shared forces of sex chromosome evolution in haploid-mating and diploid-mating organisms: Microbotryum violaceum and other model organisms
    • PMID:15454533
    • Hood ME, Antonovics J, Koskella B. Shared forces of sex chromosome evolution in haploid-mating and diploid-mating organisms: Microbotryum violaceum and other model organisms. Genetics 2004; 168:14114-14116. PMID:15454533; http://dx.doi.org/10.1534/genetics.104.029900.
    • (2004) Genetics , vol.168 , pp. 14114-14116
    • Hood, M.E.1    Antonovics, J.2
  • 64
    • 67650593842 scopus 로고    scopus 로고
    • Chromodomains and LTR retrotransposons in plants
    • PMID:19513271
    • Novikova O. Chromodomains and LTR retrotransposons in plants. Commun Integr Biol 2009; 2:158-162. PMID:19513271.
    • (2009) Commun Integr Biol , vol.2 , pp. 158-162
    • Novikova, O.1
  • 65
    • 40449136688 scopus 로고    scopus 로고
    • Chromodomains direct integration of retrotransposons to heterochromatin
    • PMID:18256242
    • Gao X, Hou Y, Ebina H, Levin HL, Voytas DF. Chromodomains direct integration of retrotransposons to heterochromatin. Genome Res 2008; 18:359-369. PMID:18256242; http://dx.doi.org/10.1101/gr.7146408.
    • (2008) Genome Res , vol.18 , pp. 359-369
    • Gao, X.1    Hou, Y.2    Ebina, H.3    Levin, H.L.4    Voytas, D.F.5
  • 66
    • 0023468755 scopus 로고
    • Inbreeding depression and its evolutionary consequences
    • Charlesworth D, Charlesworth B. Inbreeding depression and its evolutionary consequences. Annu Rev Ecol Syst 1987; 18:237-268. http://dx.doi.org/10.1146/nnurev.es.18.110187.001321.
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 237-268
    • Charlesworth, D.1    Charlesworth, B.2
  • 67
    • 79960099104 scopus 로고    scopus 로고
    • Running with the Red Queen: Host-parasite coevolution selects for biparental sex
    • PMID:21737739
    • Morran LT, Schmidt OG, Gelarden IA, Parrish RC 2nd, Lively CM. Running with the Red Queen: host-parasite coevolution selects for biparental sex. Science 2011; 333:216-218. PMID:21737739; http://dx.doi.org/10.1126/science.1206360.
    • (2011) Science , vol.333 , pp. 216-218
    • Morran, L.T.1    Schmidt, O.G.2    Gelarden, I.A.3    Parrish, R.C.4    Lively, C.M.5
  • 68
    • 80051668689 scopus 로고    scopus 로고
    • Characterization of retrotransposon sequences expressed in inflorescences of apomictic and sexual Paspalum notatum plants
    • PMID:21394488
    • Ochogavía AC, Seijo JG, González AM, Podio M, Duarte Silveira E, Machado Lacerda AL, et al. Characterization of retrotransposon sequences expressed in inflorescences of apomictic and sexual Paspalum notatum plants. Sex Plant Reprod 2011; 24:231-246. PMID:21394488; http://dx.doi.org/10.1007/s00497-011-0165-0.
    • (2011) Sex Plant Reprod , vol.24 , pp. 231-246
    • Ochogavía, A.C.1    Seijo, J.G.2    González, A.M.3    Podio, M.4    Duarte, S.E.5    Machado, L.A.L.6
  • 69
    • 0027510188 scopus 로고
    • The directed mutation controversy and neo-Darwinism
    • PMID:7678468
    • Lenski RE, Mittler JE. The directed mutation controversy and neo-Darwinism. Science 1993; 259:188-194. PMID:7678468; http://dx.doi.org/10.1126/science.7678468.
    • (1993) Science , vol.259 , pp. 188-194
    • Lenski, R.E.1    Mittler, J.E.2
  • 70
    • 7344260214 scopus 로고    scopus 로고
    • Adaptive mutagenesis: A process that generates almost exclusively beneficial mutations
    • PMID:9720275
    • Hall BG. Adaptive mutagenesis: a process that generates almost exclusively beneficial mutations. Genetica 1998; 102-103:109-125. PMID:9720275; http://dx.doi.org/10.1023/A:1017015815643.
    • (1998) Genetica , vol.102-103 , pp. 109-125
    • Hall, B.G.1
  • 71
    • 80455176844 scopus 로고    scopus 로고
    • RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II
    • PMID:22002604
    • Zaratiegui M, Castel SE, Irvine DV, Kloc A, Ren J, Li F, et al. RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II. Nature 2011; 479:135-138. PMID:22002604; http://dx.doi.org/10.1038/nature10501.
    • (2011) Nature , vol.479 , pp. 135-138
    • Zaratiegui, M.1    Castel, S.E.2    Irvine, D.V.3    Kloc, A.4    Ren, J.5    Li, F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.