Bacteriohopanoid inventory of Geobacter sulfurreducens and Geobacter metallireducens

Organic Geochemistry

Volumn 58, Issue , 2013, Pages 107-114

  Eickhoff, Merle ^a   Birgel, Daniel ^b   Talbot, Helen M ^c   Peckmann, Jörn ^b   Kappler, Andreas ^a  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b UNIVERSITY OF VIENNA   (Austria)

^c NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANAEROBIC CULTURES; BACTERIAL ACTIVITY; BACTERIOHOPANEPOLYOLS; GEOBACTER SULFURREDUCENS; METHYLOTROPHIC BACTERIA; MOLECULAR FOSSILS; SEDIMENTARY ENVIRONMENT; SEDIMENTARY RECORDS;

AEROBIC BACTERIA; ETHERS;

SEDIMENTOLOGY;

BACTERIUM; BIOCHEMISTRY; BIOLOGICAL PRODUCTION; ETHER; FOSSIL; HOPANOID; INVENTORY; IRON; MICROBIAL ACTIVITY; ORGANIC COMPOUND; OXIC CONDITIONS; OXIDATION; SEDIMENT CHEMISTRY; SEDIMENTARY SEQUENCE;

BACTERIA (MICROORGANISMS); GEOBACTER; GEOBACTER METALLIREDUCENS; GEOBACTER SULFURREDUCENS; PROKARYOTA;

EID: 84875831719     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2013.02.013     Document Type: Article

References (75)

1. Aklujkar M., Krushkal J., DiBartolo G., Lapidus A., Land M.L., Lovley D.R. The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens. BMC Microbiology 2009, 9:109. http://dx.doi.org/10.1186/1471-2180-9-109.
2. Bednarczyk A., Hernandez T.C., Schaeffer P., Adam P., Talbot H.M., Farrimond P., Riboulleau A., Largeau C., Derenne S., Rohmer M., Albrecht P. 32,35-Anhydrobacteriohopanetetrol: an unusual bacteriohopanepolyol widespread in recent and past environments. Organic Geochemistry 2005, 36:673-677.
3. Berry A.M., Harriott O.T., Moreau R.A., Osman S.F., Benson D.R., Jones A.D. Hopanoid lipids compose the Frankia vesicle envelope, presumptive barrier of oxygen diffusion to nitrogenase. Proceedings of the National Academy of Sciences of the USA 1993, 90:6091-6094.
4. Bisseret P., Zundel M., Rohmer M. Prokaryotic triterpenoids. 2. 2β-methylhopanoids from Methylobacterium organophilum and Nostoc muscorum, a new series of prokaryotic triterpenoids. European Journal of Biochemistry 1985, 150:29-34.
5. Blumenberg M., Krüger M., Nauhaus K., Talbot H.M., Oppermann B.I., Seifert R., Pape T., Michaelis W. Biosynthesis of hopanoids by sulfate-reducing bacteria (genus Desulfovibrio). Environmental Microbiology 2006, 8:1220-1227.
6. Blumenberg M., Hoppert M., Krüger M., Dreier A., Thiel V. Novel findings on hopanoid occurrences among sulfate reducing bacteria: is there a direct link to nitrogen fixation?. Organic Geochemistry 2012, 49:1-5.
7. Bratbak G., Dundas I. Bacterial dry matter content and biomass estimations. Applied and Environmental Microbiology 1984, 48:755-757.
8. Bravo J.M., Perzl M., Härtner T., Kannenberg E.L., Rohmer M. Novel methylated triterpenoids of the gammacerane series from the nitrogen-fixing bacterium Bradyrhizobium japonicum USDA 110. European Journal of Biochemistry 2001, 268:1323-1331.
9. Brocks J.J., Logan G.A., Buick R., Summons R.E. Archean molecular fossils and the early rise of eukaryotes. Science 1999, 285:1033-1036.
10. Brocks J.J., Buick R., Summons R.E., Logan G.A. A reconstruction of Archean biological diversity based on molecular fossils from the 2.78 to 2.45 billion-year-old Mount Bruce supergroup, Hamersley basin, western Australia. Geochimica et Cosmochimica Acta 2003, 67:4321-4335.
11. Brocks J.J., Schaeffer P. Okenane, a biomarker for purple sulfur bacteria (Chromatiaceae), and other new carotenoid derivatives from the 1640Ma Barney Creek formation. Geochimica et Cosmochimica Acta 2008, 72:1396-1414.
12. Caccavo F., Lonergan D.J., Lovley D.R., Davis M., Stolz J.F., McInerney M.J. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Applied and Environmental Microbiology 1994, 60:3752-3759.
13. Coates J.D., Lonergan D.J., Philips E.J.P., Jenter H., Lovley D.R. Desulfuromonas palmitatis sp. nov., a marine dissimilatory Fe(III) reducer that can oxidize long-chain fatty acids. Archives of Microbiology 1995, 164:406-413.
14. Cooke M.P., Talbot H.M., Farrimond P. Bacterial populations recorded in bacteriohopanepolyol distributions in soils from northern England. Organic Geochemistry 2008, 39:1347-1358.
15. Cooke, M.P., 2010. The Role of Bacteriohopanepolyols as Biomarkers for Soil Bacterial Communities and Soil Derived Organic Matter. PhD Thesis, Newcastle University, UK.
16. Coolen M.J.L., Talbot H.M., Abbas B.A., Ward C., Schouten S., Volkman J.K., Sinninghe Damsté J.S. Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphy. Environmental Microbiology 2008, 10:1783-1803.
17. Cummings D.E., Snoeyenbos-West O.L., Newby D.T., Niggemyer A.M., Lovley D.R., Achenbach L.A., Rosenzweig R.F. Diversity of Geobacteraceae species inhabiting metal-polluted freshwater lake sediments ascertained by 16S rDNA analyses. Microbial Ecology 2003, 46:257-269.
18. Cvejic J.H., Putra S.R., El-Beltagy A., Hattori R., Hattori T., Rohmer M. Bacterial triterpenoids of the hopane series as biomarkers for the chemotaxonomy of Burkholderia, Pseudomonas and Ralstonia spp. FEMS Microbiology Letters 2000, 183:295-299.
19. Eickhoff, M., Birgel, D., Talbot, H.M., Peckmann, J., Kappler, A., 2013. Oxidation of Fe(II) leads to increased C-2 methylation of pentacyclic triterpenoids in the anoxygenic phototrophic bacterium Rhodopseudomonas palustris strain TIE-1. Geobiology, in press.
20. Farrimond P., Head I.M., Innes H.E. Environmental influence on the biohopanoid composition of recent sediments. Geochimica et Cosmochimica Acta 2000, 64:2985-2992.
21. Fischer W.W., Summons R.E., Pearson A. Targeted genomic detection of biosynthetic pathways: anaerobic production of hopanoid biomarkers by a common sedimentary microbe. Geobiology 2005, 3:33-40.
22. Flesch G., Rohmer M. Prokaryotic triterpenoids - a novel hopanoid from the ethanol-producing bacterium Zymomonas mobilis. Biochemical Journal 1989, 262:673-675.
23. 1 Compounds 1981, Heyden, London.
24. Green P.N., Bousfield I.J., Hood D. Three new Methylobacterium species: M. rhodesianum sp. nov., M. zatmanii sp. nov., and M. fujisawaense sp. nov. International Journal of Systematic Bacteriology 1988, 38:124-127.
25. Härtner T., Straub K.L., Kannenberg E. Occurrence of hopanoid lipids in anaerobic Geobacter species. FEMS Microbiology Letters 2005, 243:59-64.
26. Handley L., Talbot H.M., Cooke M.P., Anderson K.E., Wagner T. Bacteriohopanepolyols as tracers for continental and marine organic matter supply and phases of enhanced nitrogen cycling on the late Quaternary Congo deep sea fan. Organic Geochemistry 2010, 41:910-914.
27. Hegler F., Posth N.R., Jiang J., Kappler A. Physiology of phototrophic iron(II)-oxidizing bacteria-implications for modern and ancient environments. FEMS Microbiology Ecology 2008, 66:250-260.
28. Hermans M.A.F., Neuss B., Sahm H. Content and composition of hopanoids in Zymomonas mobilis under various growth conditions. Journal of Bacteriology 1991, 173:5592-5595.
29. Innes H.E., Bishop A.N., Head I.M., Farrimond P. Preservation and diagenesis of hopanoids in recent lacustrine sediments of Priest Pot, England. Organic Geochemistry 1997, 26:565-576.
30. Jahnke L.L., Stan-Lotter H., Kato K., Hochstein L.I. Presence of methyl sterol and bacteriohopanepolyol in an outer-membrane preparation from Methylococcus capsulatus (bath). Journal of General Microbiology 1992, 138:1759-1766.
31. Joyeux C., Fouchard S., Llopiz P., Neunlist S. Influence of the temperature and the growth phase on the hopanoids and fatty acids content of Frateuria aurantia (DSMZ 6220). FEMS Microbiology Ecology 2004, 47:371-379.
32. Kannenberg E.L., Poralla K. Hopanoid biosynthesis and function in bacteria. Naturwissenschaften 1999, 86:168-176.
33. Kim J.H., Talbot H.M., Zarzycka B., Bauersachs T., Wagner T. Occurrence and abundance of soil-specific bacterial membrane lipid markers in the Tet watershed (southern France): soil-specific BHPs and branched GDGTs. Geochemistry Geophysics Geosystems 2011, 12:Q02008. 10.1029/2010gc003364.
34. Knani M., Corpe W.A., Rohmer M. Bacterial hopanoids from pink-pigmented facultative methylotrophs (PPFMs) and from green plant surfaces. Microbiology-UK 1994, 140:2755-2759.
35. Langworthy T.A., Mayberry W.R., Smith P.F. A sulfonolipid and novel glucosamidyl glycolipids from the extreme thermoacidophile Bacillus acidocaldarius. Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism 1976, 431:550-569.
36. Lin W.C., Coppi M.V., Lovley D.R. Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor. Applied and Environmental Microbiology 2004, 70:2525-2528.
37. Llopiz P., Neunlist S., Rohmer M. Prokaryotic triterpenoids: O-α-d-glucuronopyranosyl bacteriohopanetetrol, a novel hopanoid from the bacterium Rhodospirillum rubrum. Biochemical Journal 1992, 287:159-161.
38. Lovley D.R., Phillips E.J.P. Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Applied and Environmental Microbiology 1988, 54:1472-1480.
39. Lovley D.R., Giovannoni S.J., White D.C., Champine J.E., Phillips E.J.P., Gorby Y.A., Goodwin S. Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals. Archives of Microbiology 1993, 159:336-344.
40. Methé B.A., Nelson K.E., Eisen J.A., Paulsen I.T., Nelson W., Heidelberg J.F., Wu D., Wu M., Ward N., Beanan M.J., Dodson R.J., Madupu R., Brinkac L.M., Daugherty S.C., DeBoy R.T., Durkin A.S., Gwinn M., Kolonay J.F., Sullivan S.A., Haft D.H., Selengut J., Davidsen T.M., Zafar N., White O., Tran B., Romero C., Forberger H.A., Weidman J., Khouri H., Feldblyum T.V., Utterback T.R., Van Aken S.E., Lovley D.R., Fraser C.M. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science 2003, 302:1967-1969.
41. Neunlist S., Holst O., Rohmer M. Prokaryotic triterpenoids - the hopanoids of the purple non-sulfur bacterium Rhodomicrobium vannielii: an aminotriol and its aminoacyl derivatives, N-tryptophanyl and N-ornithinyl aminotriol. European Journal of Biochemistry 1985, 147:561-568.
42. Neunlist S., Bisseret P., Rohmer M. The hopanoids of the purple non-sulfur bacteria Rhodopseudomonas palustris and Rhodopseudomonas acidophila and the absolute configuration of bacteriohopanetetrol. European Journal of Biochemistry 1988, 171:245-252.
43. Ourisson G., Albrecht P., Rohmer M. Hopanoids: Palaeochemistry and biochemistry of a group of natural products. Pure and Applied Chemistry 1979, 51:709-729.
44. Ourisson G., Rohmer M., Poralla K. Prokaryotic hopanoids and other polyterpenoid sterol surrogates. Annual Review of Microbiology 1987, 41:301-333.
45. Ourisson G., Albrecht P. Hopanoids. 1. Geohopanoids: the most abundant natural products on Earth?. Accounts of Chemical Research 1992, 25:398-402.
46. Pearson A., Flood Page S.R., Jorgenson T.L., Fischer W.W., Higgins M.B. Novel hopanoid cyclases from the environment. Environmental Microbiology 2007, 9:2175-2188.
47. Pearson A., Leavitt W.D., Sáenz J.P., Summons R.E., Tam M.C.M., Close H.G. Diversity of hopanoids and squalene-hopene cyclases across a tropical land-sea gradient. Environmental Microbiology 2009, 11:1208-1223.
48. Rashby S.E., Sessions A.L., Summons R.E., Newman D.K. Biosynthesis of 2-methylbacteriohopanepolyols by an anoxygenic phototroph. Proceedings of the National Academy of Sciences of the USA 2007, 104:15099-15104.
49. Renoux J.M., Rohmer M. Prokaryotic triterpenoids - new bacteriohopanetetrol cyclitol ethers from the methylotrophic bacterium Methylobacterium organophilum. European Journal of Biochemistry 1985, 151:405-410.
50. Roden E.E., Lovley D.R. Dissimilatory Fe(III) reduction by the marine microorganism Desulfuromonas acetoxidans. Applied and Environmental Microbiology 1993, 59:734-742.
51. Rohmer M., Bouvier-Nave P., Ourisson G. Distribution of hopanoid triterpenes in prokaryotes. Journal of General Microbiology 1984, 130:1137-1150.
52. Rohmer M., Knani M., Simonin P., Sutter B., Sahm H. Isoprenoid biosynthesis in bacteria: a novel pathway for the early steps leading to isopentenyl diphosphate. Biochemical Journal 1993, 295:517-524.
53. Sáenz J.P., Eglinton T.I., Summons R.E. Abundance and structural diversity of bacteriohopanepolyols in suspended particulate matter along a river to ocean transect. Organic Geochemistry 2011, 42:774-780.
54. Sáenz J.P., Waterbury J.B., Eglinton T.I., Summons R.E. Hopanoids in marine cyanobacteria: probing their phylogenetic distribution and biological role. Geobiology 2012, 10:311-319.
55. Schaeffer P., Schmitt G., Adam P., Rohmer M. Acid-catalyzed formation of 32,35-anhydrobacteriohopanetetrol from bacteriohopanetetrol. Organic Geochemistry 2008, 39:1479-1482.
56. Schaeffer P., Schmitt G., Adam P., Rohmer M. Abiotic formation of 32,35-anhydrobacteriohopanetetrol: a geomimetic approach. Organic Geochemistry 2010, 41:1005-1008.
57. Sessions A.L., Zhang L., Welander P.V., Doughty D., Summons R.E., Newman D.K. Identification and quantification of polyfunctionalized hopanoids by high temperature gas chromatography-mass spectrometry. Organic Geochemistry 2013, http://dx.doi.org/10.1016/j.orggeochem.2012.12.009.
58. Sinninghe Damsté J.S., Rijpstra W.I.C., Schouten S., Fuerst J.A., Jetten M.S.M., Strous M. The occurrence of hopanoids in planctomycetes: implications for the sedimentary biomarker record. Organic Geochemistry 2004, 35:561-566.
59. Stookey L.L. Ferrozine - a new spectrophotometric reagent for iron. Analytical Chemistry 1970, 42:779-781.
60. Summons R.E., Jahnke L.L., Hope J.M., Logan G.A. 2-Methylhopanoids as biomarkers for cyanobacterial oxygenic photosynthesis. Nature 1999, 400:554-557.
61. Talbot H.M., Watson D.F., Murrell J.C., Carter J.F., Farrimond P. Analysis of intact bacteriohopanepolyols from methanotrophic bacteria by reversed-phase high-performance liquid chromatography-atmospheric pressure chemical ionisation mass spectrometry. Journal of Chromatography A 2001, 921:175-185.
62. Talbot H.M., Farrimond P., Schaeffer P., Pancost R.D. Bacteriohopanepolyols in hydrothermal vent biogenic silicates. Organic Geochemistry 2005, 36:663-672.
63. Talbot H.M., Farrimond P. Bacterial populations recorded in diverse sedimentary biohopanoid distributions. Organic Geochemistry 2007, 38:1212-1225.
64. Talbot H.M., Summons R.E., Jahnke L.L., Cockell C.S., Rohmer M., Farrimond P. Cyanobacterial bacteriohopanepolyol signatures from cultures and natural environmental settings. Organic Geochemistry 2008, 39:232-263.
65. Thiel V., Blumenberg M., Pape T., Seifert R., Michaelis W. Unexpected occurrence of hopanoids at gas seeps in the Black Sea. Organic Geochemistry 2003, 34:81-87.
66. Tschech A., Pfennig N. Growth yield increase linked to caffeate reduction in Acetobacterium woodii. Archives of Microbiology 1984, 137:163-167.
67. van Winden J.F., Talbot H.M., Kip N., Reichart G.J., Pol A., McNamara N.P., Jetten M.S.M., den Camp H., Sinninghe Damsté J.S. Bacteriohopanepolyol signatures as markers for methanotrophic bacteria in peat moss. Geochimica et Cosmochimica Acta 2012, 77:52-61.
68. Vilchèze C., Llopiz P., Neunlist S., Poralla K., Rohmer M. Prokaryotic triterpenoids: new hopanoids from the nitrogen fixing bacteria Azotobacter vinelandii, Beijerinckia indica and Beijerinckia mobilis. Microbiology 1994, 140:2749-2753.
69. Welander P.V., Hunter R.C., Zhang L.C., Sessions A.L., Summons R.E., Newman D.K. Hopanoids play a role in membrane integrity and pH homeostasis in Rhodopseudomonas palustris TIE-1. Journal of Bacteriology 2009, 191:6145-6156.
70. Welander P.V., Coleman M.L., Sessions A.L., Summons R.E., Newman D.K. Identification of a methylase required for 2-methylhopanoid production and implications for the interpretation of sedimentary hopanes. Proceedings of the National Academy of Sciences of the USA 2010, 107:8537-8542.
71. Welander P.V., Doughty D.M., Wu C.H., Mehay S., Summons R.E., Newman D.K. Identification and characterization of Rhodopseudomonas palustris TIE-1 hopanoid biosynthesis mutants. Geobiology 2012, 10:163-177.
72. Welander P.V., Summons R.E. Discovery, taxonomic distribution, and phenotypic characterization of a gene required for 3-methylhopanoid production. Proceedings of the National Academy of Sciences of the USA 2012, 109:12905-12910.
73. Zhu C., Talbot H.M., Wagner T., Pan J.M., Pancost R.D. Distribution of hopanoids along a land to sea transect: implications for microbial ecology and the use of hopanoids in environmental studies. Limnology and Oceanography 2011, 56:1850-1865.
74. Zundel M., Rohmer M. Prokaryotic triterpenoids. 1. 3β-Methylhopanoids from Acetobacter species and Methylococcus capsulatus. European Journal of Biochemistry 1985, 150:23-27.
75. Zundel M., Rohmer M. Prokaryotic triterpenoids. 3. The biosynthesis of 2β-methylhopanoids and 3β-methylhopanoids of Methylobacterium organophilum and Acetobacter pasteurianus ssp. pasteurianus. European Journal of Biochemistry 1985, 150:35-39.