Evolutionary history, immigration history, and the extent of diversification in community assembly

Frontiers in Microbiology

Volumn 2, Issue JAN, 2012, Pages

  Knope, Matthew L ^a   Forde, Samantha E ^b   Fukami, Tadashi ^a  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Adaptive peaks; Colonization; Dispersal; Eco evolutionary dynamics; Fitness trade off; Historical contingency; Niche pre emption; Priority effect

Indexed keywords

BACTERIA (MICROORGANISMS); PSEUDOMONAS FLUORESCENS;

EID: 84875789198     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2011.00273     Document Type: Article

References (39)

1. Brockhurst, M. A., Colegrave, N., Hodgson, D. J., and Buckling, A. (2007). Niche occupation limits adaptive radiation in experimental microcosms. PLoS ONE 2, el93-e195. doi:10.1371/journal.pone.0000193
2. Brockhurst, M. A., Morgan, A. D., Rainey, P. B., and Buckling, A. (2003). Population mixing accelerates coevolution. Ecol Lett. 6, 975-979.
3. Brockhurst, M. A., Rainey, P. B., and Buckling, A. (2004). The effect of spatial heterogeneity and parasites on the evolution of host diversity. Proc. Biol. Sci. 271, 107-111.
4. Buckling, A., and Rainey, P. B. (2002). The role of parasites in sympatric and allopatric host diversification. Nature 420,496-499.
5. Buckling, A., Wills, M. A., and Colegrave, N. (2003). Adaptation limits diversification of experimental bacterial populations. Science 302, 2107-2109.
6. Cadotte, M. W., Drake, J. A., and Fukami, T. (2005). Constructing nature: laboratory models as necessary tools for investigating complex ecological communities. Adv. Ecol. Res. 37, 333-353.
7. Calsbeek, R., and Cox, R. M. (2010). Experimentally assessing the relative importance of predation and competition as agents of selection. Nature 465, 613-616.
8. Carpenter, S. R. (1996). Microcosm experiments have limited relevance for community and ecosystem ecology. Ecology 77, 677-680.
9. Chase, J. M. (2003). Community assembly: when should history matter? Oecologia 136, 489-498.
10. Dobzhansky, T. (1937). Genetics and the Origin of Species. New York: Columbia University Press.
11. Emerson, B. C., and Gillespie, R. G. (2008). Phylogenetic analysis of community assembly and structure over space and time. Trends Ecol. Evol (Amst.) 23, 619-630.
12. Fukami,T. (2010)."Community assembly dynamics in space," in Community Ecology: Processes, Models, and Applications, edsH.A.Verhoef andP. J. Morin (Oxford: Oxford University Press), 45-54.
13. Fukami, T., Beaumont, H. J. E., Zhang, X.-X., and Rainey, P. B. (2007). Immigration history controls diversification in experimental adaptive radiation. Nature 446, 436-439.
14. Gavrilets, S., and Losos, J. B. (2009). Adaptive radiation: contrasting theory with data. Science 323, 732-736.
15. Gillespie, R. G. (2004). Community assembly through adaptive radiation in Hawaiian spiders. Science 303, 356-359.
16. Gillespie, R. G., and Emerson, B. C. (2007). Adaptation under a microscope. Nature 446, 386-387.
17. Glor, R. E. (2010). Phylogenetic insights on adaptive radiation. Annu. Rev. Ecol Evol Syst. 41, 251-270.
18. Gould, S. J. (1989). Wonderful Life: The Burgess Shale and the Nature of History. New York: W. W. Norton Press.
19. Hairston, N. G. Jr., Ellner, S. P., Geber, M. A., Yoshida, T., and Fox, J. A. (2005). Rapid evolution and the convergence of ecological and evolutionary time. Ecol Lett. 8, 1114-1127.
20. Hubbell, S. P. (2001). The Unified Neutral Theory of Biodiversity and Biogeography. Princeton: Princeton University Press.
21. Kassen, R., Llewellyn, M., and Rainey, P. B. (2004). Ecological constraints on diversification in a model adaptive radiation. Nature 451, 984-988.
22. Kassen, R., and Rainey, P. B. (2004). The ecology and genetics of microbial diversity. Annu. Rev. Microbiol. 58,207-231.
23. Kauffman, S. A. (1989). Cambrian explosion and Permian quiescence: implications of rugged fitness landscapes. Evol Ecol. 3,274-281.
24. Losos, J. B., and Ricklefs, R. E. (2009). Adaptation and diversification on islands. Nature 457, 830-836.
25. Meyer, J. R., and Kassen, R. (2007). The effects of competition and predation on diversification in a model adaptive radiation. Nature 446, 432-435.
26. Rainey, P. B., and Travisano, M. (1998). Adaptive radiation in a heterogeneous environment. Nature 394, 69-72.
27. Samuels, C. L., and Drake, J. A. (1997). Divergent perspectives on community convergence. Trends Ecol Evol. (Amst.) 12, 427-432.
28. Schluter, D. (2000). The Ecology of Adaptive Radiation. Oxford: Oxford University Press.
29. Schoener, T. W. (2011). The newest synthesis: understanding the interplay of evolutionary and ecological dynamics. Science 331, 426-429.
30. Seehausen, O. (2007). Chance, historical contingency, and ecological determinism jointly determine the rate of adaptive radiation. Heredity 99, 361-363.
31. Silvertown, J. (2004). The ghost of competition past in the phylogeny of island endemic plants. J. Ecol. 92, 168-173.
32. Simpson, G. G. (1953). The Major Features of Evolution. New York: Columbia University Press.
33. Spiers, A. J., Bohannon, J., Gehrig, S. M., and Rainey, P. B. (2003). Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose. Mol. Microbiol. 50, 15-27.
34. Spiers, A. J., Kahn, S. G., Bohannon, J., Travisano, M., and Rainey, P. B. (2002). Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness. Genetics 161, 33-46.
35. Spiers, A. J., and Rainey, P. B. (2005). The Pseudomonas fluorescens SBW25 wrinkly spreader A-L biofilm requires attachment factor, cellulose fibre and LPS interactions to maintain strength and integrity. Microbiology 151,2829-2839.
36. Urban, M. C., and De Meester, L. (2009). Community monopolization: local adaptation enhances priority effects in an evolving meta-community. Proc. Biol Sci. 276, 4129-4138.
37. Whitlock, M. C., Phillips, P. C., Moore, F. B. G., and Tonsor, S. (1995). Epistasis and multiple fitness peaks. Annu. Rev. Ecol Evol Syst. 26, 601-629.
38. Wright, S. (1932). "The roles of mutation, inbreeding, crossbreeding and selection in evolution," in Proceedings 6th International Congress of Genetics, Ithaca, NY, 356-366.
39. Zhang, X.-X., and Rainey, P. B. (2007). Construction and validation of a neutrally-marked strain of Pseudomonas fluorescens SBW25. J. Microbiol. Methods 71, 78-81