OsELF3 Is involved in circadian clock regulation for promoting flowering under long-day conditions in rice

Molecular Plant

Volumn 6, Issue 1, 2013, Pages 202-215

  Yang, Ying ^a   Peng, Qiang ^a   Chen, Guo Xing ^a   Li, Xiang Hua ^a   Wu, Chang Yin ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; VEGETABLE PROTEIN;

BIOLOGICAL MODEL; CELL FRACTIONATION; CIRCADIAN RHYTHM; FLOWER; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; LIGHT; METABOLISM; MUTATION; PHENOTYPE; PHOTOPERIODICITY; PHYLOGENY; PHYSIOLOGY; PLANT GENE; PROTEIN TRANSPORT; RADIATION RESPONSE; RICE;

CIRCADIAN CLOCKS; CIRCADIAN RHYTHM; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; LIGHT; MODELS, BIOLOGICAL; MUTATION; ORYZA SATIVA; PHENOTYPE; PHOTOPERIOD; PHYLOGENY; PLANT PROTEINS; PROTEIN TRANSPORT; RNA, MESSENGER; SUBCELLULAR FRACTIONS;

EID: 84875712249     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sss062     Document Type: Article

References (65)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science. 293, 880-883.
2. Alabadi, D., Yanovsky, M.J., Mas, P., Harmer, S.L., and Kay, S.A. (2002). Critical role for CCA1 and LHY in maintaining circadian rhythmicity in Arabidopsis. Curr. Biol. 12, 757-761.
3. Baurle, I., and Dean, C. (2006). The timing of developmental transitions in plants. Cell. 125, 655-664.
4. Covington, M.F., Panda, S., Liu, X.L., Strayer, C.A., Wagner, D.R., and Kay, S.A. (2001). ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell. 13, 1305-1315.
5. Dixon, L.E., Knox, K., Kozma-Bognar, L., Southern, M.M., Pokhilko, A., and Millar, A.J. (2011). Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis. Curr. Biol. 21, 120-125.
6. Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T., Shimatani, Z., Yano, M., and Yoshimura, A. (2004). Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev. 18, 926-936.
7. Farre, E.M., Harmer, S.L., Harmon, F.G., Yanovsky, M.J., and Kay, S.A. (2005). Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15, 47-54.
8. Filichkin, S.A., Breton, G., Priest, H.D., Dharmawardhana, P., Jaiswal, P., Fox, S.E., Michael, T.P., Chory, J., Kay, S.A., and Mockler, T.C. (2011). Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One. 6, e16907.
9. Fornara, F., deMontaigu, A., and Coupland, G. (2010). SnapShot: control of flowering in Arabidopsis. Cell. 141, 550 e551-552.
10. Fowler, S., Lee, K., Onouchi, H., Samach, A., Richardson, K., Morris, B., Coupland, G., and Putterill, J. (1999). GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. EMBO J. 18, 4679-4688.
11. Fu, C., Yang, X.O., Chen, X., Chen, W., Ma, Y., Hu, J., and Li, S. (2009). OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice. Plant Biol. (Stuttg.). 11, 751-757.
12. Hall, A., et al. (2003). The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell. 15, 2719-2729.
13. Hayama, R., Yokoi, S., Tamaki, S., Yano, M., and Shimamoto, K. (2003). Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature. 422, 719-722.
14. Hiei, Y., Ohta, S., Komari, T., and Kumashiro, T. (1994). Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J. 6, 271-282.
15. Higgins, J.A., Bailey, P.C., and Laurie, D.A. (2010). Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses. PLoS One. 5, e10065.
16. Imaizumi, T., and Kay, S.A. (2006). Photoperiodic control of flowering: not only by coincidence. Trends Plant Sci. 11, 550-558.
17. Ishikawa, R., Aoki, M., Kurotani, K., Yokoi, S., Shinomura, T., Takano, M., and Shimamoto, K. (2011). Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice. Mol. Genet. Genomics. 285, 461-470.
18. Ito, S., Kawamura, H., Niwa, Y., Nakamichi, N., Yamashino, T., and Mizuno, T. (2009). A genetic study of the Arabidopsis circadian clock with reference to the TIMING OF CAB EXPRESSION 1 (TOC1) gene. Plant Cell Physiol. 50, 290-303.
19. Itoh, H., Nonoue, Y., Yano, M., and Izawa, T. (2010). A pair of floral regulators sets critical day length for Hd3a florigen expression in rice. Nat. Genet. 42, 635-638.
20. Itoh, J.I., Hasegawa, A., Kitano, H., and Nagato, Y. (1998). A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice. Plant Cell. 10, 1511-1522.
21. Izawa, T. (2007). Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice. J. Exp. Bot. 58, 3091-3097.
22. Izawa, T., et al. (2011). Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field. Plant Cell. 23, 1741-1755.
23. Jang, S., Marchal, V., Panigrahi, K.C., Wenkel, S., Soppe, W., Deng, X.W., Valverde, F., and Coupland, G. (2008). Arabidopsis COP1 shapes the temporal pattern of CO accumulation conferring a photoperiodic flowering response. EMBO J. 27, 1277-1288.
24. Kim, S.L., Lee, S., Kim, H.J., Nam, H.G., and An, G. (2007). OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol. 145, 1484-1494.
25. Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T., and Yano, M. (2002). Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 43, 1096-1105.
26. Kolmos, E., Herrero, E., Bujdoso, N., Millar, A.J., Toth, R., Gyula, P., Nagy, F., and Davis, S.J. (2011). A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis. Plant Cell. 23, 3230-3246.
27. Komiya, R., Ikegami, A., Tamaki, S., Yokoi, S., and Shimamoto, K. (2008). Hd3a and RFT1 are essential for flowering in rice. Development. 135, 767-774.
28. Komiya, R., Yokoi, S., and Shimamoto, K. (2009). A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice. Development. 136, 3443-3450.
29. Kumar, S., Nei, M., Dudley, J., and Tamura, K. (2008). MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform. 9, 299-306.
30. Lee, Y.S., et al. (2010). OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB. Plant J. 63, 18-30.
31. Liu, K.D., Wang, J., Li, H.B., Xu, C.G., Liu, A.M., Li, X.H., and Zhang, Q. (1997). A genome-wide analysis of wide compatibility in rice and the precise location of the S5 locus in the molecular map. Theor Appl. Genet. 95, 809-814.
32. Liu, L.J., Zhang, Y.C., Li, Q.H., Sang, Y., Mao, J., Lian, H.L., Wang, L., and Yang, H.Q. (2008). COP1-mediated ubiquitination of CONSTANS is implicated in cryptochrome regulation of flowering in Arabidopsis. Plant Cell. 20, 292-306.
33. Liu, X.L., Covington, M.F., Fankhauser, C., Chory, J., and Wagner, D.R. (2001). ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell. 13, 1293-1304.
34. Livak, K.J., and Schmittgen, T.D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 25, 402-408.
35. Lu, S.X., Webb, C.J., Knowles, S.M., Kim, S.H., Wang, Z., and Tobin, E.M. (2012). CCA1 and ELF3 interact in the control of hypocotyl length and flowering time in Arabidopsis. Plant Physiol. 158, 1079-1088.
36. Matsubara, K., Ogiso-Tanaka, E., Hori, K., Ebana, K., Ando, T., and Yano, M. (2012). Natural variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice photoperiodic flowering. Plant Cell Physiol. 53, 709-716.
37. McWatters, H.G., Bastow, R.M., Hall, A., and Millar, A.J. (2000). The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature. 408, 716-720.
38. Mizoguchi, T., and Yoshida, R. (2009). Punctual coordination: switching on and off for flowering during a day. Plant Signal Behav. 4, 113-115.
39. Murakami, M., Matsushika, A., Ashikari, M., Yamashino, T., and Mizuno, T. (2005). Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Biosci. Biotechnol. Biochem. 69, 410-414.
40. Murakami, M., Tago, Y., Yamashino, T., and Mizuno, T. (2007). Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol. 48, 110-121.
41. Murray, M.G., and Thompson, W.F. (1980). Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4325.
42. Nakamichi, N., Kiba, T., Henriques, R., Mizuno, T., Chua, N.H., and Sakakibara, H. (2010). PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell. 22, 594-605.
43. Nakamichi, N., Kita, M., Ito, S., Yamashino, T., and Mizuno, T. (2005). PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. Plant Cell Physiol. 46, 686-698.
44. Nusinow, D.A., Helfer, A., Hamilton, E.E., King, J.J., Imaizumi, T., Schultz, T.F., Farre, E.M., and Kay, S.A. (2011). The ELF4-ELF3- LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature. 475, 398-402.
45. Ogiso, E., Takahashi, Y., Sasaki, T., Yano, M., and Izawa, T. (2010). The role of casein kinase II in flowering time regulation has diversified during evolution. Plant Physiol. 152, 808-820.
46. Reed, J.W., Nagpal, P., Bastow, R.M., Solomon, K.S., Dowson-Day, M.J., Elumalai, R.P., and Millar, A.J. (2000). Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiol. 122, 1149-1160.
47. Saito, H., et al. (2012). Ef7 encodes an ELF3-like protein and promotes rice flowering by negatively regulating the floral repressor gene Ghd7 under both short- and long-day conditions. Plant Cell Physiol. 53, 717-728.
48. Sawa, M., Nusinow, D.A., Kay, S.A., and Imaizumi, T. (2007). FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science. 318, 261-265.
49. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carre, I.A., and Coupland, G. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell. 93, 1219-1229.
50. Serikawa, M., Miwa, K., Kondo, T., and Oyama, T. (2008). Functional conservation of clock-related genes in flowering plants: overexpression and RNA interference analyses of the circadian rhythm in the monocotyledon Lemna gibba. Plant Physiol. 146, 1952-1963.
51. Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Mas, P., Panda, S., Kreps, J.A., and Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science. 289, 768-771.
52. Suarez-Lopez, P., Wheatley, K., Robson, F., Onouchi, H., Valverde, F., and Coupland, G. (2001). CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature. 410, 1116-1120.
53. Takano, M., et al. (2005). Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice. Plant Cell. 17, 3311-3325.
54. Tsuji, H., Taoka, K., and Shimamoto, K. (2011). Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation. Curr. Opin. Plant Biol. 14, 45-52.
55. Valverde, F., Mouradov, A., Soppe, W., Ravenscroft, D., Samach, A., and Coupland, G. (2004). Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science. 303, 1003-1006.
56. Wang, Z.Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell. 93, 1207-1217.
57. Wu, C., et al. (2003). Development of enhancer trap lines for functional analysis of the rice genome. Plant J. 35, 418-427.
58. Wu, C., You, C., Li, C., Long, T., Chen, G., Byrne, M.E., and Zhang, Q. (2008). RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice. Proc. Natl Acad. Sci. U S A. 105, 12915-12920.
59. Xue, W., et al. (2008). Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat. Genet. 40, 761-767.
60. Yano, M., et al. (2000). Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell. 12, 2473-2484.
61. Yanovsky, M.J., and Kay, S.A. (2002). Molecular basis of seasonal time measurement in Arabidopsis. Nature. 419, 308-312.
62. Yoshida, R., et al. (2009). Possible role of early flowering 3 (ELF3) in clock-dependent floral regulation by short vegetative phase (SVP) in Arabidopsis thaliana. New Phytol. 182, 838-850.
63. Yu, J.W., et al. (2008). COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol. Cell. 32, 617-630.
64. Zagotta, M.T., Hicks, K.A., Jacobs, C.I., Young, J.C., Hangarter, R.P., and Meeks-Wagner, D.R. (1996). The Arabidopsis ELF3 gene regulates vegetative photomorphogenesis and the photoperiodic induction of flowering. Plant J. 10, 691-702.
65. Zhang, J., et al. (2007). Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library. Plant J. 49, 947-959.