Bacterial and fungal community responses to reciprocal soil transfer along a temperature and soil moisture gradient in a glacier forefield

Soil Biology and Biochemistry

Volumn 61, Issue , 2013, Pages 121-132

  Zumsteg, Anita ^a   Bååth, Erland ^b   Stierli, Beat ^a   Zeyer, Josef ^c   Frey, Beat ^a  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^b LUND UNIVERSITY   (Sweden)

^c ETH ZURICH   (Switzerland)

Author keywords

Adaptation; Bacteria; Fungi; Glacier forefield; Microbial activity; Microbial community structure; Soil moisture; Soil transfer; Temperature

Indexed keywords

ADAPTATION; GLACIER FOREFIELD; MICROBIAL ACTIVITIES; MICROBIAL COMMUNITY STRUCTURES; SOIL TRANSFERS;

BACTERIA; MICROORGANISMS; SOCIAL SCIENCES; SOIL MOISTURE; TEMPERATURE;

FUNGI;

ADAPTATION; COMMUNITY STRUCTURE; FUNGUS; GLACIER; GRANITE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PHYLOGENETICS; PHYSICOCHEMICAL PROPERTY; SAMPLING; SOIL MOISTURE; SOIL PROPERTY; SPECIES DIVERSITY;

ACIDOBACTERIA; ACTINOBACTERIA; ASCOMYCOTA; BACTERIA (MICROORGANISMS); FUNGI; PEZIZOMYCETES; PROTEOBACTERIA;

EID: 84875662755     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2013.02.017     Document Type: Article

References (63)

1. Albert K.R., Rinnan R., Ro-Poulsen H., Mikkelsen T.N., Håkansson K.B., Arndal M.F., Michelsen A. Solar ultraviolet-B radiation at Zackenberg: the impact on higher plants and soil microbial communities. Advances in Ecological Research 2008, 40:421-440.
2. Anderson M. DISTLM v. 5: a FORTRAN Computer Program to Calculate a Distance-based Multivariate Analysis for a Linear Model 2004, Department of Statistics, University of Auckland, New Zealand, p. 10.
3. Anderson M.J. A new method for non-parametric multivariate analysis of variance. Austral Ecology 2001, 26:32-46.
4. Bååth E. Growth rates of bacterial communities in soils at varying pH: a comparison of the thymidine and leucine incorporation techniques. Microbial Ecology 1998, 36:316-327.
5. Bååth E. Estimation of fungal growth rates in soil using C-14-acetate incorporation into ergosterol. Soil Biology & Biochemistry 2001, 33:2011-2018.
6. Barcenas-Moreno G., Gomez-Brandon M., Rousk J., Bååth E. Adaptation of soil microbial communities to temperature: comparison of fungi and bacteria in a laboratory experiment. Global Change Biology 2009, 15:2950-2957.
7. Bell C., McIntyre N., Cox S., Tissue D., Zak J. Soil microbial responses to temporal variations of moisture and temperature in a Chihuahuan Desert grassland. Microbial Ecology 2008, 56:153-167.
8. Bell T.H., Klironomos J.N., Henry H.A.L. Seasonal responses of extracellular enzyme activity and microbial biomass to warming and nitrogen addition. Soil Science Society of America Journal 2010, 74:820-828.
9. Bernasconi S.M., Bauder A., Bourdon B., Brunner I., Bunemann E., Christl I., Derungs N., Edwards P., Farinotti D., Frey B., Frossard E., Furrer G., Gierga M., Göransson H., Gulland K., Hagedorn F., Hajdas I., Hindshaw R., Ivy-Ochs S., Jansa J., Jonas T., Kiczka M., Kretzschmar R., Lemarchand E., Luster J., Magnusson J., Mitchell E.A.D., Venterink H.O., Plotze M., Reynolds B., Smittenberg R.H., Stahli M., Tamburini F., Tipper E.T., Wacker L., Welc M., Wiederhold J.G., Zeyer J., Zimmermann S., Zumsteg A. Chemical and biological gradients along the Damma Glacier soil chronosequence, Switzerland. Vadose Zone Journal 2011, 10:867-883.
10. Beyer L., Bolter M., Seppelt R.D. Nutrient and thermal regime, microbial biomass, and vegetation of Antarctic soils in the Windmill Islands region of East Antarctica (Wilkes Land). Arctic, Antarctic and Alpine Research 2000, 32:30-39.
11. Bottomley P.J., Yarwood R.R., Kageyama S.A., Waterstripe K.E., Williams M.A., Cromack K., Myrold D.D. Responses of soil bacterial and fungal communities to reciprocal transfers of soil between adjacent coniferous forest and meadow vegetation in the Cascade Mountains of Oregon. Plant and Soil 2006, 289:35-45.
12. Brankatschk R., Towe S., Kleineidam K., Schloter M., Zeyer J. Abundances and potential activities of nitrogen cycling microbial communities along a chronosequence of a glacier forefield. ISME Journal 2011, 5:1025-1037.
13. Brinkmann M., Pearce D.A., Convey P., Ott S. The cyanobacterial community of polygon soils at an inland Antarctic nunatak. Polar Biology 2007, 30:1505-1511.
14. Brunner I., Plotze M., Rieder S.R., Zumsteg A., Furrer G., Frey B. Pioneering fungi from the Damma glacier forefield in the Swiss Alps can promote granite weathering. Geobiology 2011, 9:266-279.
15. Christner B.C., Mosley-Thompson E., Thompson L.G., Reeve J.N. Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice. Environmental Microbiology 2001, 3:570-577.
16. Clarke K.R., Somerfield P.J., Gorley R.N. Testing of null hypotheses in exploratory community analyses: similarity profiles and biota-environment linkage. Journal of Experimental Marine Biology and Ecology 2008, 366:56-69.
17. Costello E.K., Schmidt S.K. Microbial diversity in alpine tundra wet meadow soil: novel Chloroflexi from a cold, water-saturated environment. Environmental Microbiology 2006, 8:1471-1486.
18. Davis K.E.R., Sangwan P., Janssen P.H. Acidobacteria, Rubrobacteridae and Chloroflexi are abundant among very slow-growing and mini-colony-forming soil bacteria. Environmental Microbiology 2011, 13:798-805.
19. Dunn O.J. Multiple comparisons among means. Journal of the American Statistical Association 1961, 56:52-64.
20. Eichorst S.A., Kuske C.R., Schmidt T.M. Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria. Applied and Environmental Microbiology 2011, 77:586-596.
21. Fermani P., Mataloni G., Van de Vijver B. Soil microalgal communities on an Antarctic active volcano (Deception Island, South Shetlands). Polar Biology 2007, 30:1381-1393.
22. Fontaine S., Henault C., Aamor A., Bdioui N., Bloor J.M.G., Maire V., Mary B., Revaillot S., Maron P.A. Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect. Soil Biology & Biochemistry 2011, 43:86-96.
23. Frey B., Rieder S.R., Brunner I., Plotze M., Koetzsch S., Lapanje A., Brandl H., Furrer G. Weathering-associated bacteria from the Damma Glacier forefield: physiological capabilities and impact on granite dissolution. Applied and Environmental Microbiology 2010, 76:4788-4796.
24. Frey B., Niklaus P.A., Kremer J., Luscher P., Zimmermann S. Heavy-machinery traffic impacts methane emissions as well as methanogen abundance and community structure in oxic forest soils. Applied and Environmental Microbiology 2011, 77:6060-6068.
25. Gee G.W., Bauder J.W. Particle-size analysis. Methods of Soil Analysis 1986, American Society of Agronomy, Madison, WI.
26. Göransson H., Venterink H.O., Bååth E. Soil bacterial growth and nutrient limitation along a chronosequence from a glacier forefield. Soil Biology & Biochemistry 2011, 43:1333-1340.
27. Green V.S., Stott D.E., Diack M. Assay for fluorescein diacetate hydrolytic activity: optimization for soil samples. Soil Biology & Biochemistry 2006, 38:693-701.
28. Greenhouse S.W., Geisser S. On methods in the analysis of profile data. Psychometrika 1959, 24:95-112.
29. Hart S.C. Potential impacts of climate change on nitrogen transformations and greenhouse gas fluxes in forests: a soil transfer study. Global Change Biology 2006, 12:1032-1046.
30. Hartmann M., Howes C.G., VanInsberghe D., Yu H., Bachar D., Christen R., Nilsson R.H., Hallam S.J., Mohn W.W. Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests. ISME Journal 2012, 6:2199-2218.
31. Hawes T.C. Aeolian fallout on recently deglaciated terrain in the high Arctic. Polar Biology 2008, 31:295-301.
32. Jumpponen A. Soil fungal community assembly in a primary successional glacier forefront ecosystem as inferred from rDNA sequence analyses. New Phytologist 2003, 158:569-578.
33. Jumpponen A., Trappe J.M., Cazares E. Occurrence of ectomycorrhizal fungi on the forefront of retreating Lyman Glacier (Washington, USA) in relation to time since deglaciation. Mycorrhiza 2002, 12:43-49.
34. Kirschbaum M.U.F. Soil respiration under prolonged soil warming: are rate reductions caused by acclimation or substrate loss?. Global Change Biology 2004, 10:1870-1877.
35. Lankau R.A. Resistance and recovery of soil microbial communities in the face of Alliaria petiolata invasions. New Phytologist 2010, 189:536-548.
36. Lapanje A., Wimmersberger C., Furrer G., Brunner I., Frey B. Pattern of elemental release during the granite dissolution can be changed by aerobic heterotrophic bacterial strains isolated from Damma glacier (Central Alps) deglaciated granite sand. Microbial Ecology 2011, 63:865-882.
37. Lazzaro A., Gauer A., Zeyer J. Field-scale transplantation experiment to investigate structures of soil bacterial communities at pioneering sites. Applied and Environmental Microbiology 2011, 77:8241-8248.
38. Lazzaro A., Brankatschk R., Zeyer J. Seasonal dynamics of nutrients and bacterial communities in unvegetated alpine glacier forefields. Applied Soil Ecology 2012, 53:10-22.
39. Lipson D.A. Relationships between temperature responses and bacterial community structure along seasonal and altitudinal gradients. FEMS Microbiology Ecology 2007, 59:418-427.
40. Loffler U.C.M., Cypionka H., Loffler J. Soil microbial activity along an arctic-alpine altitudinal gradient from a seasonal perspective. European Journal of Soil Science 2008, 59:842-854.
41. Long T., Or D. Dynamics of microbial growth and coexistence on variably saturated rough surfaces. Microbial Ecology 2009, 58:262-275.
42. Mannisto M.K., Tiirola M., Haggblom M.M. Effect of freeze-thaw cycles on bacterial communities of Arctic Tundra soil. Microbial Ecology 2009, 58:621-631.
43. Marx M.C., Wood M., Jarvis S.C. A microplate fluorimetric assay for the study of enzyme diversity in soils. Soil Biology & Biochemistry 2001, 33:1633-1640.
44. Nicol G.W., Tscherko D., Embley T.M., Prosser J.I. Primary succession of soil crenarchaeota across a receding glacier foreland. Environmental Microbiology 2005, 7:337-347.
45. Oberhaus L., Briand J.F., Leboulanger C., Jacquet S., Humbert J.F. Comparative effects of the quality and quantity of light and temperature on the growth of Planktothrix agardhii and P. rubescens. Journal of Phycology 2007, 43:1191-1199.
46. Paul F., Kaab A., Maisch M., Kellenberger T., Haeberli W. Rapid disintegration of Alpine glaciers observed with satellite data. Geophysical Research Letters 2004, 31:L21402.
47. Pettersson M., Bååth E. Temperature-dependent changes in the soil bacterial community in limed and unlimed soil. FEMS Microbiology Ecology 2003, 45:13-21.
48. Philippot L., Tscherko D., Bru D., Kandeler E. Distribution of high bacterial taxa across the chronosequence of two Alpine glacier forelands. Microbial Ecology 2011, 61:303-312.
49. Rousk J., Frey S.D., Bååth E. Temperature adaptation of bacterial communities in experimentally warmed forest soils. Global Change Biology 2012, 18:3252-3258.
50. Sattin S.R., Cleveland C.C., Hood E., Reed S.C., King A.J., Schmidt S.K., Robeson M.S., Ascarrunz N., Nemergut D.R. Functional shifts in unvegetated, perhumid, recently-deglaciated soils do not correlate with shifts in soil bacterial community composition. Journal of Microbiology 2009, 47:673-681.
51. Schaffer B., Attinger W., Schulin R. Compaction of restored soil by heavy agricultural machinery - soil physical and mechanical aspects. Soil and Tillage Research 2007, 93:28-43.
52. Schloss P.D., Allen H.K., Klimowicz A.K., Mlot C., Gross J.A., Savengsuksa S., McEllin J., Clardy J., Ruess R.W., Handelsman J. Psychrotrophic strain of Janthinobacterium lividum from a cold Alaskan soil produces prodigiosin. DNA and Cell Biology 2010, 29:533-541.
53. Schmidt S.K., Lynch R.C., King A.J., Karki D., Robeson M.S., Nagy L., Williams M.W., Mitter M.S., Freeman K.R. Phylogeography of microbial phototrophs in the dry valleys of the high Himalayas and Antarctica. Proceedings of the Royal Society of Biological Sciences 2011, 278:702-708.
54. Schnürer J., Rosswall T. Fluorescein diacetate hydrolysis as a measure of total microbial activity in soil and litter. Applied and Environmental Microbiology 1982, 43:1256-1261.
55. Schutte U.M.E., Abdo Z., Bent S.J., Williams C.J., Schneider G.M., Solheim B., Forney L.J. Bacterial succession in a glacier foreland of the high Arctic. ISME Journal 2009, 3:1258-1268.
56. Torsvik V., Øvreås L. Microbial diversity, life strategies, and adaptation to life in extreme soils. Microbiology of Extreme Soils 2008, vol. 13:15-43. Springer, Berlin, Heidelberg.
57. Vincent W.F., Mueller D.R., Bonilla S. Ecosystems on ice: the microbial ecology of Markham Ice Shelf in the high Arctic. Cryobiology 2004, 48:103-112.
58. Waldrop M.P., Firestone M.K. Response of microbial community composition and function to soil climate change. Microbial Ecology 2006, 52:716-724.
59. Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J., Barabote R.D., Bradley B., Brettin T.S., Brinkac L.M., Bruce D., Creasy T., Daugherty S.C., Davidsen T.M., Deboy R.T., Detter J.C., Dodson R.J., Durkin A.S., Ganapathy A., Gwinn-Giglio M., Han C.S., Khouri H., Kiss H., Kothari S.P., Madupu R., Nelson K.E., Nelson W.C., Paulsen I., Penn K., Ren Q.H., Rosovitz M.J., Selengut J.D., Shrivastava S., Sullivan S.A., Tapia R., Thompson L.S., Watkins K.L., Yang Q., Yu C.H., Zafar N., Zhou L.W., Kuske C.R. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and Environmental Microbiology 2009, 75:2046-2056.
60. Wright J., Smith B., Whalley B. Mechanisms of loess-sized quartz silt production and their relative effectiveness: laboratory simulations. Geomorphology 1998, 23:15-34.
61. Yuste J.C., Penuelas J., Estiarte M., Garcia-Mas J., Mattana S., Ogaya R., Pujol M., Sardans J. Drought-resistant fungi control soil organic matter decomposition and its response to temperature. Global Change Biology 2011, 17:1475-1486.
62. Zumsteg A., Bernasconi S.M., Zeyer J., Frey B. Microbial community and activity shifts after soil transplantation in a glacier forefield. Applied Geochemistry 2011, 26:326-S329.
63. Zumsteg A., Luster J., Göransson H., Smittenberg R.H., Brunner I., Bernasconi S.M., Zeyer J., Frey B. Bacterial, archaeal and fungal succession in the forefield of a receding glacier. Microbial Ecology 2012, 63:552-564.