Exact pattern matching with feed-forward Bloom filters

2011 Proceedings of the 13th Workshop on Algorithm Engineering and Experiments, ALENEX 2011

Volumn , Issue , 2011, Pages 1-12

  Moraru, Iulian ^a   Andersen, David G ^a  

^a Carnegie Mellon University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATA STRUCTURES; PATTERN MATCHING;

ASYMPTOTIC TIME COMPLEXITY; CPU ARCHITECTURE; EXACT-PATTERN MATCHING; LARGE CORPORA; MEMORY CONSUMPTION; MEMORY EFFICIENT; MULTIPLE-PATTERN MATCHING; OPTIMIZED ALGORITHMS;

CACHE MEMORY;

EID: 84875615876     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1137/1.9781611972917.1     Document Type: Conference Paper

References (22)

1. Read the Web Project Webpage. http://rtw.ml.cmu.edu/readtheweb.html.
2. Streptococcus Suis Sequencing Webpage. http://www.sanger.ac.uk/Projects/ S-suis.
3. A. V. Aho and M. J. Corasick, Efficient string matching: An aid to bibliographic search, Communications of the ACM, 18 (1975), pp. 333-340.
4. D. G. Andersen, J. Franklin, M. Kaminsky, A. Phanishayee, L. Tan, and V. Vasudevan, FAWN: A fast array of wimpy nodes, in Proc. 22nd ACM Symposium on Operating Systems Principles (SOSP), Big Sky, MT, Oct. 2009.
5. B. H. Bloom, Space/time trade-offs in hash coding with allowable errors, Communications of the ACM, 13 (1970), pp. 422-426.
6. R. S. Boyer and J. S. Moore, A fast string searching algorithm, Communications of the ACM, 20 (1977), pp. 762-772.
7. S. K. Cha, I. Moraru, J. Jang, J. Truelove, D. Brumley, and D. G. Andersen, SplitScreen: Enabling efficient, distributed malware detection, in Proc. 7th USENIX NSDI, San Jose, CA, Apr. 2010.
8. B. Chazelle, J. Kilian, R. Rubinfeld, A. Tal, and O. Boy, The bloomier filter: An eficient data structure for static support lookup tables, in In Proceedings of the Fifteenth Annual ACM-SIAM Symposium on Discrete Algorithms (SODA), 2004, pp. 30-39.
9. J. D. Cohen, Recursive hashing functions for n grams, ACM Transactions on Information Systems, 15 (1997), pp. 291-320.
10. S. Cohen and Y. Matias, Spectral bloom filters, in Proceedings of the 2003 ACM SIGMOD international conference on Management of data, ACM, 2003, pp. 241-252.
11. B. Commentz-Walter, A string matching algorithm fast on the average, in Proceedings of the 6th Colloquium, on Automata, Languages and Programming, London, UK, 1979, Springer-Verlag, pp. 118-132.
12. L. Fan, P. Cao, J. Almeida, and A. Z. Broder, Summary cache: A scalable wide-area Web cache sharing protocol, in Proc. ACM SIGCOMM, Vancouver, British Columbia, Canada, Sept. 1998, pp. 254-265.
13. F. Hao, M. Kodialam, and T. V. Lakshman, Building high accuracy bloom filters using partitioned hashing, SIGMETRICS Performance Evaluation Review, (2007), pp. 277-288.
14. R. M. Karp and M. O. Rabin, Eficient randomized pattern-matching algorithms, IBM Journal of Research Developments, (1987), pp. 249-260.
15. S. Kim and Y. Kim, A Fast Multiple StringPattern Matching Algorithm, in Proceedings of the 17th AoM/IAoM Conference on Computer Science, 1999.
16. A. Kirsch and M. Mitzenmacher, Distancesensitive bloom filters, in In Proceedings of the Eighth Workshop on Algorithm Engineering and Experiments (ALENEX), 2006.
17. Less hashing, same performance: Building a better bloom filter, Random Structures & Algorithms, 33 (2008), pp. 187-218.
18. P.-c. Lin, Z.-x. Li, Y.-d. Lin, and Y.-c. Lai, Profiling and accelerating string matching algorithms in three network content security applications, IEEE Communications Surveys & Tutorials, 8 (2006).
19. H. Mangalam, tacg a grep for dna, BMC Bioinformatics, 3 (2002), p. 8.
20. R. Muth and U. Manber, Approximate multiple string search, in Proceedings CPM'96, LNCS 1075, Springer-Verlag, 1996, pp. 75-86.
21. F. Putze, P. Sanders, and S. Johannes, Cache-, hashand space-eficient bloom filters, in Experimental Algorithms, Springer Berlin/Heidelberg, 2007, pp. 108-121.
22. S. Wu and U. Manber, A fast algorithm for multi-pattern searching, Tech. Rep. TR-94-17, Department of Computer Science, University of Arizona, 1994.