Representation of research hypotheses

Journal of Biomedical Semantics

Volumn 2, Issue 2, 2011, Pages

  Soldatova, Larisa N ^a   Rzhetsky, Andrey ^b  

^a ABERYSTWYTH UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84875596482     PISSN: None     EISSN: 20411480     Source Type: Journal    
DOI: 10.1186/2041-1480-2-S2-S9     Document Type: Article

References (26)

1. Gao Y, Kinoshita J, Wu E: SWAN: A Distributed Knowledge Infrastructure for Alzheimer Disease Research. J. of Web Semantics. 2006, 4 (3): 222-228. 10.1016/j.websem.2006.05.006.
2. Whelan KE, King RD: Using a logical model to predict the growth of yeast. BMC Bioinformatics. 2008, 9: 97-10.1186/1471-2105-9-97.
3. The OBI Consortium: [ http://obi-ontology.org ]
4. The ART project: [ http://www.jisc.ac.uk/whatwedo/programmes/reppres/tools/art.aspx ]
5. Soldatova LN, King RD: An Ontology of Scientific Experiments. J R Soc Interface. 2006, 3 (11): 795-803. 10.1098/rsif.2006.0134.
6. The ART Corpus: [ http://www.ukoln.ac.uk/projects/ART_Corpus/ ]
7. Racunas SA, Shah NH, Albert I, Fedoroff NV: Hybrow: a prototype system for computer-aided hypothesis evaluation. Bioinformatics. 2004, 20 (Suppl. 1):
8. The HyBrow project: [ http://www.hybrow.org ]
9. The Yeast Proteome: [ http://www.proteome.com ]
10. Large-Scale Discovery of Scientific Hypotheses project: [ http://arrafunding.uchicago.edu/investigators/rzhetsky_a.shtml ]
11. King RD, Rowland J, Oliver SG: The Automation of Science. Science. 2009, 324: 85-89. 10.1126/science.1165620.
12. Qi D, King RD, Hopkins A, Bickerton R, Soldatova LN: An Ontology for Description of Drug Design Investigations. J Integr Bioinform. 2010, 7 (3):
13. The Robot Scientist project: [ http://www.aber.ac.uk/en/cs/research/cb/projects/robotscientist/results/ ]
14. King RD, Whelan KE, Jones FM: Functional genomic hypothesis generation and experimentation by a robot scientist. Nature. 2004, 427: 247-252. 10.1038/nature02236.
15. Soldatova LN, Clare A, Sparkes A, King RD: An ontology for a Robot Scientist. Bioinformatics. 2006, 22 (14): e464-e471. 10.1093/bioinformatics/btl207.
16. Smith B, Ceusters W, Klagges B, Kohler J, Kumar A, Lomax J, Mungall CJ, Neuhaus F, Rector A, Rosse C: Relations in Biomedical Ontologies. Genome Biology. 2005, 6: R46-10.1186/gb-2005-6-5-r46.
17. Schmidt M, Lipson H: Distilling Free-Form Natural Laws from Experimental Data. Science. 2009, 81-85. 10.1126/science.1165893.
18. Kuhn Th.S.: The structure of scientific revolutions. 1962, University of Chicago Press
19. Smith B: Beyond concepts: Ontology as reality representation. Proc. FOIS. 2004
20. Ray O, Clare A, Liakata M, Soldatova L, Whelan K, King R: Towards the Automation of Scientific Method. Proc. IJCAI'09 Workshop on Abductive & Inductive Knowledge Development. 2009
21. The OBI Consortium: Modeling experimental processes with OBI. J Biomed Semantics. 2010, 1 Suppl 1: S7-
22. Dumontier M, Hoehndorf R: Realism for scientific ontologies. Proc. FOIS. 2010, 387-399.
23. The OBO Foundry: [ http://www.obofoundry.org/ ]
24. Smith: The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 2007, 25: 1251-1255. 10.1038/nbt1346.
25. Howson C, Urbach P: Scientific reasoning: The Bayesian approach. 1993, Chicago: Open Court
26. Feynman R: "Surely You're Joking, Mr. Feynman!": Adventures of a Curious Character. 1985, W.W. Norton