Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae)

Proceedings of the National Academy of Sciences of the United States of America

Volumn 110, Issue 13, 2013, Pages 5074-5079

  Zhang, Rui ^a,b   Guo, Chunce ^a,b   Zhang, Wengen ^a,b   Wang, Peipei ^a,b   Li, Lin ^a,b   Duan, Xiaoshan ^a,b,c   Du, Qinggao ^c   Zhao, Liang ^c   Shan, Hongyan ^a   Hodges, Scott A ^d   Kramer, Elena M ^e   Ren, Yi ^c   Kong, Hongzhi ^a  

^a INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c SHAANXI NORMAL UNIVERSITY   (China)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e HARVARD UNIVERSITY   (United States)

Author keywords

ABC model; Development; Flower; Parallel evolution

Indexed keywords

2 AMINO 3 PHOSPHONOPROPIONIC ACID;

ARTICLE; CLEMATIS; DOWN REGULATION; GENE DELETION; GENE EXPRESSION; GENE ISOLATION; GENE SILENCING; INTRON; PETAL; PRIORITY JOURNAL; PSEUDOGENE; RANUNCULACEAE; SEPAL; THALICTRUM;

DNA TRANSPOSABLE ELEMENTS; EVOLUTION, MOLECULAR; FLOWERS; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; MADS DOMAIN PROTEINS; MUTAGENESIS, INSERTIONAL; PLANT PROTEINS; RANUNCULACEAE;

BEESIA; CLEMATIS; ENEMION; MAGNOLIOPHYTA; NIGELLA; RANUNCULACEAE; THALICTRUM;

EID: 84875538850     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1219690110     Document Type: Article

References (40)

1. Endress PK (1994) Diversity and Evolutionary Biology of Tropical Flowers (Cambridge Univ Press, Cambridge, UK).
2. Soltis DE, Soltis PS, Endress PK, Chase MW (2005) Phylogeny and Evolution of Angiosperms (Sinauer Associates, Sunderland, MA).
3. Kozo-Poljanski BM (1922) An Introduction to Phylogenetic Systematics of the Higher Plants (Nature and Culture, Voronezh, USSR).
4. Takhtajan A (2009) Flowering Plants (Springer, Berlin).
5. Kramer EM, Irish VF (1999) Evolution of genetic mechanisms controlling petal development. Nature 399(6732):144-148.
6. Irish VF (2009) Evolution of petal identity. J Exp Bot 60(9):2517-2527.
7. Rasmussen DA, Kramer EM, Zimmer EA (2009) One size fits all? Molecular evidence for a commonly inherited petal identity program in Ranunculales. Am J Bot 96(1):96-109.
8. Coen ES, Meyerowitz EM (1991) The war of the whorls: Genetic interactions controlling flower development. Nature 353(6339):31-37.
9. Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405(6783):200-203.
10. Honma T, Goto K (2001) Complexes of MADS-box proteins are sufficient to convert leaves into floral organs. Nature 409(6819):525-529.
11. Theissen G, Saedler H (2001) Plant biology: Floral quartets. Nature 409(6819):469-471.
12. Ditta G, Pinyopich A, Robles P, Pelaz S, Yanofsky MF (2004) The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity. Curr Biol 14(21): 1935-1940.
13. Kramer EM, Dorit RL, Irish VF (1998) Molecular evolution of genes controlling petal and stamen development: Duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics 149(2):765-783.
14. Kim S, et al. (2005) Expression of floral MADS-box genes in basal angiosperms: Implications for the evolution of floral regulators. Plant J 43(5):724-744.
15. Zahn LM, et al. (2005) The evolution of the SEPALLATA subfamily of MADS-box genes: A preangiosperm origin with multiple duplications throughout angiosperm history. Genetics 169(4):2209-2223.
16. Shan H, et al. (2007) Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. Mol Phylogenet Evol 44(1):26-41.
17. Baum DA, Whitlock BA (1999) Plant development: Genetic clues to petal evolution. Curr Biol 9(14):R525-R527.
18. Heywood VH, Brummitt RK, Culham A, Seberg O (2007) Flowering Plant Families of the World (Firefly Books, Richmond Hill, ON, Canada).
19. Judd WS, et al. (2008) Plant Systematics: A Phylogenetics Approach (Sinauer Associates, Sunderland, MA).
20. Tamura M (1995) ANGIOSPERMAE: Ordnung Ranunculales. Fam. Ranunculaceae (Duncker & Humblot, Berlin).
21. Damerval C, Nadot S (2007) Evolution of perianth and stamen characteristics with respect to floral symmetry in Ranunculales. Ann Bot (Lond) 100(3):631-640.
22. Wang W, et al. (2009) Phylogeny and classification of Ranunculales: evidence from four molecular loci and morphological data. Perspect Plant Ecol Evol Syst 11:81-110.
23. Kramer EM, Di Stilio VS, Jaramillo MA (2003) Complex patterns of gene duplication in the APETALA3 and PISTILLATA lineages of the Ranunculaceae. Int J Plant Sci 164:1-11.
24. Sharma B, Guo C, Kong H, Kramer EM (2011) Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. New Phytol 191(3):870-883.
25. Miikeda O, Kita K, Handa T, Yukawa T (2006) Phylogenetic relationships of Clematis (Ranunculaceae) based on chloroplast and nuclear DNA sequences. Bot J Linn Soc 152: 153-168.
26. Lloréns C, Futami R, Bezemer D, Moya A (2008) The Gypsy Database (GyDB) of mobile genetic elements. Nucleic Acids Res 36(Database issue):D38-D46.
27. Wessler SR (2006) Transposable elements and the evolution of eukaryotic genomes. Proc Natl Acad Sci USA 103(47):17600-17601.
28. Feschotte C (2008) Transposable elements and the evolution of regulatory networks. Nat Rev Genet 9(5):397-405.
29. Riechmann JL, Wang M, Meyerowitz EM (1996) DNA-binding properties of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA and AGAMOUS. Nucleic Acids Res 24(16):3134-3141.
30. Tilly JJ, Allen DW, Jack T (1998) The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects. Development 125(9):1647-1657.
31. Wuesta SE, et al. (2012) Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA. Proc Natl Acad Sci USA 109:13453-13457.
32. West AG, Sharrocks AD (1997) The role of DNA-bending in MADS-box transcription factor function. Biochem Soc Trans 25(4):S639.
33. West AG, Shore P, Sharrocks AD (1997) DNA binding by MADS-box transcription factors: A molecular mechanism for differential DNA bending. Mol Cell Biol 17(5): 2876-2887.
34. de Folter S, Angenent GC (2006) trans meets cis in MADS science. Trends Plant Sci 11(5):224-231.
35. Kramer EM, et al. (2007) Elaboration of B gene function to include the identity of novel floral organs in the lower eudicot Aquilegia. Plant Cell 19(3):750-766.
36. Tucker SC, Hodges SA (2005) Floral ontogeny of Aquilegia, Semiaquilegia, and Enemion (Ranunculaceae). Int J Plant Sci 166:557-574.
37. Soza VL, Brunet J, Liston A, Smith PS, Di Stilio VS (2012) Phylogenetic insights into the correlates of dioecy in meadow-rues (Thalictrum, Ranunculaceae). Mol Phylogenet Evol 63(1):180-192.
38. -ΔΔCt Method. Methods 25(4):402-408.
39. Sharma B, Kramer E (2013) Sub- and neo-functionalization of APETALA3 paralogs have contributed to the evolution of novel floral organ identity in Aquilegia (columbine, Ranunculaceae). New Phytol 197(3):949-957.
40. Kramer EM (2005) Methods for studying the evolution of plant reproductive structures: Comparative gene expression techniques. Methods Enzymol 395:617-636.