CAMTA 1 regulates drought responses in Arabidopsis thaliana

BMC Genomics

Volumn 14, Issue 1, 2013, Pages

  Pandey, Neha ^a   Ranjan, Alok ^b   Pant, Poonam ^a   Tripathi, Rajiv K ^a   Ateek, Farha ^a   Pandey, Haushilla P ^c   Patre, Uday V ^a   Sawant, Samir V ^a  

^a CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

^b MEHARRY MEDICAL COLLEGE   (United States)

^c BANARAS HINDU UNIVERSITY   (India)

Author keywords

CAMTA1 mutant; Drought recovery; Gene expression; Microarray; Osmotic stress; RWC; WUE

Indexed keywords

ABSCISIC ACID; HEAT SHOCK PROTEIN; LIPID TRANSFER PROTEIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR AP2; TRANSCRIPTION FACTOR EREBP; UNCLASSIFIED DRUG;

ABIOTIC STRESS; APOPTOSIS; ARABIDOPSIS; ARTICLE; C REPEAT DRE BINDING FACTOR 2 GENE; CALMODULIN BINDING TRANSCRIPTION ACTIVATOR 1 GENE; CELL DIFFERENTIATION; CELL MEMBRANE; CHLOROPLAST; COLD REGULATED 78 GENE; CONTROLLED STUDY; DNA METHYLATION; DROUGHT; EARLY RESPONSIVE TO DEHYDRATION 7 GENE; GENE; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; HEAT SHOCK PROTEIN GENE; LIPID TRANSFER PROTEIN GENE; MICROARRAY ANALYSIS; NONHUMAN; OSMOTIC STRESS; PHENOTYPE; PHOTOSYNTHESIS; PHOTOSYSTEM II; PLANT GENE; PLANT GROWTH; PLANT LEAF; PLANT RESPONSE; PROMOTER REGION; RESPONSIVE TO ABA 18 GENE; RESPONSIVE TO DESICCATION 26 GENE; ROOT DEVELOPMENT;

ABSCISIC ACID; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CALCIUM-BINDING PROTEINS; CELL MEMBRANE; CHLOROPLASTS; DNA METHYLATION; DROUGHTS; GENE REGULATORY NETWORKS; PHENOTYPE; PHOTOSYNTHESIS; PLANT ROOTS; PROMOTER REGIONS, GENETIC; REGULATORY ELEMENTS, TRANSCRIPTIONAL; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84875506179     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-216     Document Type: Article

References (60)

1. Boyer JS. Plant productivity and environment. Science 1982, 218(4571):443-448. 10.1126/science.218.4571.443, 17808529.
2. Poovaiah BW, Reddy ASN, Feldman DL. Calcium and signal transduction in plants. Crit Rev Plant Sci 1993, 12(3):185-211.
3. Reddy VS, Reddy ASN. Proteomics of calcium-signaling components in plants. Phytochemistry 2004, 65(12):1745-1776. 10.1016/j.phytochem.2004.04.033, 15276435.
4. Snedden WA, Fromm H. Calmodulin as a versatile calcium signal transducer in plants. New Phytol 2001, 151(1):35-66.
5. Boucha N, Scharlat A, Snedden W, Bouchez D, Fromm H. A novel family of calmodulin-binding transcription activators in multicellular organisms. J Biol Chem 2002, 277(24):21851. 10.1074/jbc.M200268200, 11925432.
6. Boucha N, Yellin A, Snedden WA, Fromm H. Plant-specific calmodulin-binding proteins. Annu Rev Plant Biol 2005, 56:435-466. 10.1146/annurev.arplant.56.032604.144224, 15862103.
7. Knight H. Calcium signaling during abiotic stress in plants. Int Rev Cytol 1999, 195:269-324.
8. Reddy ASN, Ali GS, Celesnik H, Day IS. Coping with stresses: roles of calcium-and calcium/calmodulin-regulated gene expression. The Plant Cell Online 2011, 23(6):2010-2032.
9. Rentel MC, Knight MR. Oxidative stress-induced calcium signaling in Arabidopsis. Plant Physiol 2004, 135(3):1471-1479. 10.1104/pp.104.042663, 519063, 15247375.
10. Zielinski RE. Calmodulin and calmodulin-binding proteins in plants. Annu Rev Plant Biol 1998, 49(1):697-725.
11. Harmon AC. Calcium-regulated protein kinases of plants. Gravit Space Biol 2007, 16(2):83-90.
12. Luan S, Kudla J, Rodriguez-Concepcion M, Yalovsky S, Gruissem W. Calmodulins and calcineurin Bac like proteins: Calcium sensors for specific signal response coupling in plants. The Plant Cell Online 2002, 14(suppl 1):S389-S400.
13. Finkler A, Ashery-Padan R, Fromm H. CAMTAs: calmodulin-binding transcription activators from plants to human. FEBS Lett 2007, 581(21):3893-3898. 10.1016/j.febslet.2007.07.051, 17689537.
14. Yang T, Poovaiah BW. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J Biol Chem 2002, 277(47):45049-45058. 10.1074/jbc.M207941200, 12218065.
15. Reddy ASN, Reddy VS, Golovkin M. A calmodulin binding protein from Arabidopsis is induced by ethylene and contains a DNA-binding motif. Biochem Biophys Res Commun 2000, 279(3):762-769. 10.1006/bbrc.2000.4032, 11162426.
16. Du L, Ali GS, Simons KA, Hou J, Yang T, Reddy ASN, Poovaiah BW. Ca2+/calmodulin regulates salicylic-acid-mediated plant immunity. Nature 2009, 457(7233):1154-1158. 10.1038/nature07612, 19122675.
17. Yang T, Poovaiah BW. An early ethylene up-regulated gene encoding a calmodulin-binding protein involved in plant senescence and death. J Biol Chem 2000, 275(49):38467.
18. Galon Y, Nave R, Boyce JM, Nachmias D, Knight MR, Fromm H. Calmodulin-binding transcription activator (CAMTA) 3 mediates biotic defense responses in < i > Arabidopsis. FEBS Lett 2008, 582(6):943-948. 10.1016/j.febslet.2008.02.037, 18298954.
19. Galon Y, Aloni R, Nachmias D, Snir O, Feldmesser E, Scrase-Field S, Boyce JM, Bouche N, Knight MR, Fromm H. Calmodulin-binding transcription activator 1 mediates auxin signaling and responds to stresses in Arabidopsis. Planta 2010, 232(1):165-178. 10.1007/s00425-010-1153-6, 20383645.
20. Galon Y, Finkler A, Fromm H. Calcium-regulated transcription in plants. Mol Plant 2010, 3(4):653-669. 10.1093/mp/ssq019, 20457642.
21. Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. The Plant Cell Online 2009, 21(3):972-984.
22. Mitsuda N, Isono T, Sato MH. Arabidopsis CAMTA family proteins enhance V-PPase expression in pollen. Plant Cell Physiol 2003, 44(10):975-981. 10.1093/pcp/pcg137, 14581622.
23. Choi H, Park HJ, Park JH, Kim S, Im MY, Seo HH, Kim YW, Hwang I, Kim SY. Arabidopsis calcium-dependent protein kinase AtCPK32 interacts with ABF4, a transcriptional regulator of abscisic acid-responsive gene expression, and modulates its activity. Plant Physiol 2005, 139(4):1750-1761. 10.1104/pp.105.069757, 1310556, 16299177.
24. OdCe S. CG-1, a parsley light-induced DNA-binding protein. Plant Mol Biol 1994, 25(5):921. 10.1007/BF00028887, 8075408.
25. Hobo T, Kowyama Y, Hattori T. A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription. Proc Natl Acad Sci 1999, 96(26):15348. 10.1073/pnas.96.26.15348, 24822, 10611387.
26. Yang T, Peng H, Whitaker BD, Conway WS. Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening. BMC Plant Biol 2012, 12(1):19. 10.1186/1471-2229-12-19, 3292969, 22330838.
27. Farquhar GD, Ehleringer JR, Hubick KT. Carbon isotope discrimination and photosynthesis. Annu Rev Plant Biol 1989, 40(1):503-537.
28. Zhu JK. Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 2002, 53:247. 10.1146/annurev.arplant.53.091401.143329, 3128348, 12221975.
29. Condon AG, Farquhar GD, Richards RA. Genotypic variation in carbon isotope discrimination and transpiration efficiency in wheat. Leaf gas exchange and whole plant studies. Funct Plant Biol 1990, 17(1):9-22.
30. Ingram J, Bartels D. The molecular basis of dehydration tolerance in plants. Annu Rev Plant Biol 1996, 47(1):377-403.
31. Gigon A, Matos AR, Laffray D, Zuily-Fodil Y, Pham-Thi AT. Effect of drought stress on lipid metabolism in the leaves of Arabidopsis thaliana (ecotype Columbia). Ann Bot 2004, 94(3):345-351. 10.1093/aob/mch150, 15277243.
32. Shinozaki K, Yamaguchi-Shinozaki K. Molecular responses to dehydration and low temperature: differences and cross-talk between two stress signaling pathways. Curr Opin Plant Biol 2000, 3(3):217-223.
33. Shinozaki K, Yamaguchi-Shinozaki K. Gene expression and signal transduction in water-stress response. Plant Physiol 1997, 115(2):327. 10.1104/pp.115.2.327, 158490, 12223810.
34. Cornic G, Massacci A. Leaf photosynthesis under drought stress. Photosynth Environ 2004, 5:347-366.
35. Sharp RE. Interaction with ethylene: changing views on the role of abscisic acid in root and shoot growth responses to water stress. Plant Cell Environ 2002, 25(2):211-222. 10.1046/j.1365-3040.2002.00798.x, 11841664.
36. Park CM. Auxin homeostasis in plant stress adaptation response. Plant Signal Behav 2007, 2(4):306-307. 10.4161/psb.2.4.4069, 2634159, 19704630.
37. Pierik R, Sasidharan R, Voesenek LACJ. Growth control by ethylene: adjusting phenotypes to the environment. J Plant Growth Regul 2007, 26(2):188-200.
38. Shinozaki K, Yamaguchi-Shinozaki K. Gene networks involved in drought stress response and tolerance. J Exp Bot 2007, 58(2):221-227.
39. Gurley WB. HSP101: a key component for the acquisition of thermotolerance in plants. Sci STKE 2000, 12(4):457.
40. Zhu JK. Epigenome sequencing comes of age. Cell 2008, 133(3):395-397. 10.1016/j.cell.2008.04.016, 3137521, 18455978.
41. Rabinowicz PD, Schutz K, Dedhia N, Yordan C, Parnell LD, Stein L, McCombie WR, Martienssen RA. Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome. Nat Genet 1999, 23(3):305-308. 10.1038/15479, 10545948.
42. Sijen T, Kooter JM. Post-transcriptional gene-silencing: RNAs on the attack or on the defense?. Bioessays 2000, 22(6):520-531. 10.1002/(SICI)1521-1878(200006)22:6<520::AID-BIES5>3.0.CO;2-W, 10842306.
43. Huang K, Fan G. DNA methylation in cell differentiation and reprogramming: an emerging systematic view. Regen Med 2010, 5(4):531-544. 10.2217/rme.10.35, 20632857.
44. Lam E. Controlled cell death, plant survival and development. Nat Rev Mol Cell Biol 2004, 5(4):305-315. 10.1038/nrm1358, 15071555.
45. Chen Z, Hong X, Zhang H, Wang Y, Li X, Zhu JK, Gong Z. Disruption of the cellulose synthase gene, AtCesA8/IRX1, enhances drought and osmotic stress tolerance in Arabidopsis. Plant J 2005, 43(2):273-283. 10.1111/j.1365-313X.2005.02452.x, 15998313.
46. Yamaguchi-Shinozaki K, Kasuga M, Liu Q, Nakashima K, Sakuma Y, Abe H, Shinwari ZK, Seki M, Shinozaki K. Biological mechanisms of drought stress response. JIRCAS Working Report 2002, 23:1-8.
47. Bohnert HJ, Nelson DE, Jensen RG. Adaptations to Environmental Stresses. Plant Cell 1995, 7(7):1099-1111. 160917, 12242400.
48. Bray EA. Plant responses to water deficit. Trends Plant Sci 1997, 2(2):48-54.
49. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis. The Plant Cell Online 1998, 10(8):1391-1406.
50. Shen Q, Ho THD. Promoter switches specific for abscisic acid (ABA)-induced gene expression in cereals. Physiol Plant 1997, 101(4):653-664.
51. Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchia Shinozaki K. Interaction between two cisâ acting elements, ABRE and DRE, in ABA†dependent expression of Arabidopsis rd29A gene in response to dehydration and highâ salinity stresses. Plant J 2003, 34(2):137-148. 10.1046/j.1365-313X.2003.01708.x, 12694590.
52. Kizis D, Pages M. Maize DRE-binding proteins DBF1 and DBF2 are involved in rab17 regulation through the drought-responsive element in an ABA-dependent pathway. Plant J 2002, 30(6):679-689. 10.1046/j.1365-313X.2002.01325.x, 12061899.
53. Quan R, Hu S, Zhang Z, Zhang H, Huang R. Overexpression of an ERF transcription factor TSRF1 improves rice drought tolerance. Plant Biotechnol J 2010, 8(4):476-488. 10.1111/j.1467-7652.2009.00492.x, 20233336.
54. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 1998, 10(8):1391-1406. 144379, 9707537.
55. Irizarry RA, Hobbs B, Collin F, Beazer†Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
56. Carlson JM, Chakravarty A, DeZiel CE, Gross RH. SCOPE: a web server for practical de novo motif discovery. Nucleic Acids Res 2007, 35(suppl 2):W259-W264. 1933170, 17485471.
57. Nikitin A, Egorov S, Daraselia N, Mazo I. Pathway studio the analysis and navigation of molecular networks. Bioinformatics 2003, 19(16):2155-2157. 10.1093/bioinformatics/btg290, 14594725.
58. Shameer K, Ambika S, Varghese SM, Karaba N, Udayakumar M, Sowdhamini R. STIFDB Arabidopsis Stress Responsive Transcription Factor DataBase. Int J Plant Genomics 2009, 2009:583429-583437. 2763139, 19841686.
59. Peng Z, Zhou X, Li L, Yu X, Li H, Jiang Z, Cao G, Bai M, Wang X, Jiang C. Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis. Nucleic Acids Res 2009, 37(suppl 1):D975-D982. 2686556, 19015126.
60. Davuluri R, Sun H, Palaniswamy S, Matthews N, Molina C, Kurtz M, Grotewold E. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinforma 2003, 4(1):25.