Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy

Frontiers in Neural Circuits

Volumn , Issue MAR, 2013, Pages

  Panier, Thomas ^a   Romano, Sebastián A ^b,c,d,e   Olive, Raphaël ^a   Pietri, Thomas ^b,c,d,e   Sumbre, Germán ^b,c,d,e   Candelier, Raphaël ^a   Debrégeas, Georges ^a  

^a SORBONNE UNIVERSITÉ   (France)

^b PSL RESEARCH UNIVERSITY   (France)

^c INSERM   (France)

^d CNRS   (France)

^e ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOSENSOR; BRAIN SIZE; CONFOCAL MICROSCOPY; EMBRYO; FUNCTIONAL ASSESSMENT; IMAGE ANALYSIS; IMAGE PROCESSING; MICROSCOPY; MULTIPHOTON MICROSCOPY; NEUROIMAGING; NONHUMAN; POINT SCANNING MICROSCOPY; SELECTIVE PLANE ILLUMINATION MICROSCOPY; SIGNAL NOISE RATIO; THREE DIMENSIONAL IMAGING; ZEBRA FISH;

EID: 84875497075     PISSN: 16625110     EISSN: None     Source Type: Journal    
DOI: 10.3389/fncir.2013.00065     Document Type: Article

References (44)

1. A.Paul Alivisatos, Miyoung Chun, George M. Church, Ralph J. Greenspan, Michael L. Roukes, and Rafael Yuste. The Brain Activity Map Project and the Challenge of Functional Connectomics. Neuron, 74(6):970-974, 2012.
2. Jiangang Du, Timothy J. Blanche, Reid R. Harrison, Henry A. Lester, and Sotiris C. Masmani-dis. Multiplexed, high density electrophysiology with nanofabricated neural probes. PLoS One, 6(10):e26204, 2011.
3. Ian H. Stevenson and Konrad P. Kording. How advances in neural recording affect data analysis. Nat Neurosci, 14(2):139-142, Feb 2011.
4. Christine Grienberger and Arthur Konnerth. Imaging calcium in neurons. Neuron, 73(5):862-885, Mar 2012.
5. Wyart Claire, Bene Filippo Del, Warp Erica, Scott Ethan K., Trauner Dirk, Baier Herwig, and Isacoff Ehud Y. Optogenetic dissection of a behavioural module in the vertebrate spinal cord. Nature, 461(7262):407-410, sep 2009. 10.1038/nature08323.
6. W Denk, JH Strickler, and WW Webb. Two-photon laser scanning fluorescence microscopy. Science, 248(4951):73-76, 1990.
7. R. Yuste and W. Denk. Dendritic spines as basic functional units of neuronal integration. Nature, 375(6533):682-684, Jun 1995.
8. Johann H. Bollmann and Florian Engert. Subcellular topography of visually driven dendritic activity in the vertebrate visual system. Neuron, 61(6):895-905, Mar 2009.
9. Terrence F. Holekamp, Diwakar Turaga, and Timothy E. Holy. Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy. Neuron, 57(5):661-672, Mar 2008.
10. R. Salomé, Y. Kremer, S. Dieudonné, J-F. Léger, O. Krichevsky, C. Wyart, D. Chatenay, and L. Bourdieu. Ultrafast random-access scanning in two-photon microscopy using acousto-optic deflectors. J Neurosci Methods, 154(1-2):161-174, Jun 2006.
11. Kyle P. Lillis, Alfred Eng, John A. White, and Jerome Mertz. Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution. J Neurosci Methods, 172(2):178-184, Jul 2008.
12. Benjamin F. Grewe, Dominik Langer, Hansjrg Kasper, Bjrn M. Kampa, and Fritjof Helmchen. Highspeed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision. Nat Methods, 7(5):399-405, May 2010.
13. Gergely Katona, Gergely Szalay, Pal Maak, Attila Kaszas, Mate Veress, Daniel Hillier, Balazs Chiovini, E Sylvester Vizi, Botond Roska, and Balzs Rzsa. Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes. Nat Methods, 9(2):201-208, Feb 2012.
14. Michael Weber and Jan Huisken. Light sheet microscopy for real-time developmental biology. Current Opinion in Genetics and Development, 21(5):566-572, 2011.
15. Jerome Mertz. Optical sectioning microscopy with planar or structured illumination. Nat Meth, 8(10):811-819, October 2011.
16. Raju Tomer, Khaled Khairy, and Philipp J. Keller. Shedding light on the system: studying embryonic development with light sheet microscopy. Curr Opin Genet Dev, 21(5):558-565, Oct 2011.
17. Jan Huisken, Jim Swoger, Filippo Del Bene, Joachim Wittbrodt, and Ernst H K. Stelzer. Optical sectioning deep inside live embryos by selective plane illumination microscopy. Science, 305(5686):1007-1009, Aug 2004.
18. Peter J. Verveer, Jim Swoger, Francesco Pampaloni, Klaus Greger, Marco Marcello, and Ernst H K. Stelzer. High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy. Nat Methods, 4(4):311-313, Apr 2007.
19. Philipp J. Keller and Hans-Ulrich Dodt. Light sheet microscopy of living or cleared specimens. Curr Opin Neurobiol, 22(1):138-143, Feb 2012.
20. Christoph J. Engelbrecht, Fabian Voigt, and Fritjof Helmchen. Miniaturized selective plane illumination microscopy for high-contrast in vivo fluorescence imaging. Opt Lett, 35(9):1413-1415, May 2010.
21. Diwakar Turaga and Timothy E. Holy. Organization of vomeronasal sensory coding revealed by fast volumetric calcium imaging. J Neurosci, 32(5):1612-1621, Feb 2012.
22. Shin-ichi Higashijima, Mark A. Masino, Gail Mandel, and Joseph R. Fetcho. Imaging neuronal activity during zebrafish behavior with a genetically encoded calcium indicator. J Neurophysiol, 90(6):3986-3997, Dec 2003.
23. Cristopher M. Niell and Stephen J. Smith. Functional imaging reveals rapid development of visual response properties in the zebrafish tectum. Neuron, 45(6):941-951, Mar 2005.
24. Pavan Ramdya and Florian Engert. Emergence of binocular functional properties in a monocular neural circuit. Nat Neurosci, 11(9):1083-1090, Sep 2008.
25. German Sumbre, Akira Muto, Herwig Baier, and Mu-ming Poo. Entrained rhythmic activities of neuronal ensembles as perceptual memory of time interval. Nature, 456(7218):102-106, Nov 2008.
26. David L. McLean and Joseph R. Fetcho. Spinal interneurons differentiate sequentially from those driving the fastest swimming movements in larval zebrafish to those driving the slowest ones. J Neurosci, 29(43):13566-13577, Oct 2009.
27. Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K. Scott, Ehud Y. Isacoff, and Herwig Baier. Filtering of visual information in the tectum by an identified neural circuit. Science, 330(6004):669-673, Oct 2010.
28. Mark Aizenberg and Erin M. Schuman. Cerebellar-dependent learning in larval zebrafish. J Neurosci, 31(24):8708-8712, Jun 2011.
29. Misha B. Ahrens, Jennifer M. Li, Michael B. Orger, Drew N. Robson, Alexander F. Schier, Florian Engert, and Ruben Portugues. Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature, 485(7399):471-477, May 2012.
30. H. C. Park, C. H. Kim, Y. K. Bae, S. Y. Yeo, S. H. Kim, S. K. Hong, J. Shin, K. W. Yoo, M. Hibi, T. Hirano, N. Miki, A. B. Chitnis, and T. L. Huh. Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons. Dev Biol, 227(2):279-293, Nov 2000.
31. Lin Tian, S Andrew Hires, and Loren L. Looger. Imaging neuronal activity with genetically encoded calcium indicators. Cold Spring Harb Protoc, 2012(6):647-656, Jun 2012.
32. C. H. Kim, E. Ueshima, O. Muraoka, H. Tanaka, S. Y. Yeo, T. L. Huh, and N. Miki. Zebrafish elav/huc homologue as a very early neuronal marker. Neurosci Lett, 216(2):109-112, Sep 1996.
33. J. A. Lister, C. P. Robertson, T. Lepage, S. L. Johnson, and D. W. Raible. nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. Development, 126(17):3757-3767, Sep 1999.
34. Thai V Truong, Willy Supatto, David S Koos, John M Choi, and Scott E Fraser. Deep and fast live imaging with two-photon scanned light-sheet microscopy. Nat Meth, 8(9):757-760, September 2011.
35. Daniel A. Dombeck, Anton N. Khabbaz, Forrest Collman, Thomas L. Adelman, and David W. Tank. Imaging large-scale neural activity with cellular resolution in awake, mobile mice. Neuron, 56(1):43-57, Oct 2007.
36. J.B. MacQueen. Some Methods for classification and Analysis of Multivariate Observations. In Proceedings of 5-th Berkeley Symposium on Mathematical Statistics and Probability, volume 1, pages 281-297. Berkeley, University of California Press, 1967.
37. Henry Lütcke and Fritjof Helmchen. Two-photon imaging and analysis of neural network dynamics. Reports on Progress in Physics, 74(8):086602, 2011.
38. Adrian Hill, C. Vyvyan Howard, Uwe Strahle, and Andrew Cossins. Neurodevelopmental defects in zebrafish (Danio rerio) at environmentally relevant dioxin (TCDD) concentrations. Toxicol Sci, 76(2):392-399, Dec 2003.
39. Benjamin F. Grewe, Fabian F. Voigt, Marcel van'T Hoff, and Fritjof Helmchen. Fast two-layer two-photon imaging of neuronal cell populations using an electrically tunable lens. Biomed Opt Express, 2(7):2035-2046, Jul 2011.
40. Jasper Akerboom, Tsai-Wen Chen, Trevor J. Wardill, Lin Tian, Jonathan S. Marvin, Sevin Mutlu, Nicole Carreras Caldern, Federico Esposti, Bart G. Borghuis, Xiaonan Richard Sun, Andrew Gordus, Michael B. Orger, Ruben Portugues, Florian Engert, John J. Macklin, Alessandro Filosa, Aman Aggarwal, Rex A. Kerr, Ryousuke Takagi, Sebastian Kracun, Eiji Shigetomi, Baljit S. Khakh, Herwig Baier, Leon Lagnado, Samuel S-H. Wang, Cornelia I. Bargmann, Bruce E. Kimmel, Vivek Jayaraman, Karel Svoboda, Douglas S. Kim, Eric R. Schreiter, and Loren L. Looger. Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging. J Neurosci, 32(40):13819-13840, Oct 2012.
41. Philipp J Keller, Annette D Schmidt, Anthony Santella, Khaled Khairy, Zhirong Bao, Joachim Wittbrodt, and Ernst H K Stelzer. Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nat Meth, 7(8):637-642, August 2010.
42. L. Silvestri, A. Bria, L. Sacconi, G. Iannello, and F. S. Pavone. Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain. Opt Express, 20(18):20582-20598, Aug 2012.
43. Jonathan Palero, Susana I C O Santos, David Artigas, and Pablo Loza-Alvarez. A simple scanless two-photon fluorescence microscope using selective plane illumination. Opt Express, 18(8):8491-8498, Apr 2010.
44. Thomas A Planchon, Liang Gao, Daniel E Milkie, Michael W Davidson, James A Galbraith, Catherine G Galbraith, and Eric Betzig. Rapid three-dimensional isotropic imaging of living cells using Bessel beam plane illumination. Nat Meth, 8(5):417-423, May 2011.