Activation Energy of Extracellular Enzymes in Soils from Different Biomes

PLoS ONE

Volumn 8, Issue 3, 2013, Pages

  Steinweg, J Megan ^a,b   Jagadamma, Sindhu ^a,b   Frerichs, Joshua ^c   Mayes, Melanie A ^a,b  

^a OAK RIDGE NATIONAL LABORATORY   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c University of Tennessee Knoxville   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLUCOSIDASE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; HYDROLASE; MONOPHENOL MONOOXYGENASE; PEROXIDASE;

ACTIVATION ENERGY; ARTICLE; BIOME; CHEMICAL PARAMETERS; CONTROLLED STUDY; ENZYME ACTIVATION; ENZYME ACTIVITY; ENZYME ASSAY; ENZYME DEGRADATION; ENZYME KINETICS; SOIL ANALYSIS; SOIL CHEMISTRY; SOIL PROPERTY;

ENVIRONMENT; ENZYMES; HYDROLYSIS; OXIDATION-REDUCTION; SOIL; SOIL MICROBIOLOGY;

EID: 84875423416     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0059943     Document Type: Article

References (49)

1. Lawrence CR, Neff JC, Schimel JP, (2009) Does adding microbial mechanisms of decomposition improve soil organic matter models? A comparison of four models using data from a pulsed rewetting experiment. Soil Biology & Biochemistry 41: 1923-1934.
2. Moorhead DL, Sinsabaugh RL, (2006) A theoretical model of litter decay and microbial interaction. Ecological Monographs 76: 151-174.
3. Schimel JP, Weintraub MN, (2003) The implications of exoenzyme activity on microbial carbon and nitrogen limitation in soil: a theoretical model. Soil Biology & Biochemistry 35: 549-563.
4. Wang G, Post WM, (2012) A theoretical reassessment of microbial maintenance and implications for microbial ecology modeling. FEMS Microbiology Ecology 81: 610-617.
5. Wang G, Post WM, Mayes MA, (2012) Development of microbial-enzyme-mediated decomposition model parameters through steady-state and dynamic analyses. Ecological Applications In press.
6. Davidson EA, Janssens IA, (2006) Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 440: 165-173.
7. Skopp J, Jawson MD, Doran JW, (1990) Steady-State Aerobic Microbial Activity as a Function of Soil-Water Content. Soil Science Society of America Journal 54: 1619-1625.
8. Steinweg JM, Plante AF, Conant RT, Paul EA, Tanaka DL, (2008) Patterns of substrate utilization during long-term incubations at different temperatures. Soil Biology & Biochemistry 40: 2722-2728.
9. Wallenstein MD, Allison SD, Ernakovich J, Steinweg JM, Sinsabaugh RL (2011) Controls on the Temperature Sensitivity of Soil Enzymes: A Key Driver of In Situ Enzyme Activity Rates. In: Shukla G, Varma A, editors. Soil Enzymology. Berlin: Springer-Verlag. pp. 245-258.
10. Gillooly JF, Brown JH, West GB, Savage VM, Charnov EL, (2001) Effects of size and temperature on metabolic rate. Science 293: 2248-2251.
11. Enquist BJ, Economo EP, Huxman TE, Allen AP, Ignace DD, et al. (2003) Scaling metabolism from organisms to ecosystems. Nature 423: 639-642.
12. Wallenstein MD, Weintraub MN, (2008) Emerging tools for measuring and modeling the in situ activity of soil extracellular enzymes. Soil Biology & Biochemistry 40: 2098-2106.
13. Lloyd J, Taylor JA, (1994) On the temperature dependence of soil respiration. Functional Ecology 8: 315-323.
14. Di Nardo C, Cinquegrana A, Papa S, Fuggi A, Fioretto A, (2004) Laccase and peroxidase isoenzymes during leaf litter decomposition of Quercus ilex in a Mediterranean ecosystem. Soil Biology & Biochemistry 36: 1539-1544.
15. Craine JM, Fierer N, McLauchlan KK, (2010) Widespread coupling between the rate and temperature sensitivity of organic matter decay. Nature Geosciences 3: 854-857.
16. Trasar-Cepeda C, Gil-Sotres F, Leiros MC, (2007) Thermodynamic parameters of enzymes in grassland soils from Galicia, NW Spain. Soil Biology & Biochemistry 39: 311-319.
17. Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, et al. (2008) Stoichiometry of soil enzyme activity at global scale. Ecology Letters 11: 1252-1264.
18. Baldrian P, Valaskova V, (2008) Degradation of cellulose by basidiomycetous fungi. FEMS Microbiology Reviews 32: 501-521.
19. Stricker A, Mach R, de Graaff L, (2008) Regulation of transcription of cellulases- and hemicellulases-encoding genes inAspergillus niger and Hypocrea jecorina (Trichoderma reesei). Applied Microbiology and Biotechnology 78: 211-220.
20. Shi W (2011) Agricultural and ecological significance of soil enzymes: soil carbon sequenstration and nutrient cycling. In: Shukla G, Varma A, editors. Soil Enzymology. Berlin: Springer-Verlag. pp. 43-60.
21. Caldwell BA, (2005) Enzyme activities as a component of soil biodiversity: A review. Pedobiologia 49: 637-644.
22. Koch O, Tscherko D, Kandeler E, (2007) Temperature sensitivity of microbial respiration, nitrogen mineralization, and potential soil enzyme activities in organic alpine soils. Global Biogeochemical Cycles 21: GB4017.
23. Feller G, (2003) Molecular adaptations to cold in psychrophilic enzymes. Cellular and Molecular Life Sciences 60: 648-662.
24. Huston AL, Krieger-Brockett BB, Deming JW, (2000) Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea ice. Environmental Microbiology 2: 383-388.
25. Závodszky P, Kardos J, Svingor Á, Petsko GA, (1998) Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins. Proceedings of the National Academy of Sciences 95: 7406-7411.
26. Hochachka P, Somero G (1984) Biochemical adaptation. Princeton, NJ: Princeton University Press.
27. Lonhienne T, Gerday C, Feller G, (2000) Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility. Biochimica et Biophysica Acta (BBA)- Protein Structure and Molecular Enzymology 1543: 1-10.
28. Marx MC, Kandeler E, Wood M, Wermbter N, Jarvis SC, (2005) Exploring the enzymatic landscape: distribution and kinetics of hydrolytic enzymes in soil particle-size fractions. Soil Biology & Biochemistry 37: 35-48.
29. Burns RG (1986) Interactions of enzymes with soil mineral and organic colloids. In: Guang PM, Schnitzer M, editors. Interactions of soil minerals with natural organics and microbes. Madison, WI: Soil Science Society of America. pp. 429-451.
30. Nannipieri P, Sequi P, Fusi P (1996) Humus and enzyme activity. In: Piccolo A, editor. Humic substances in terrestrial ecosystems. New York: Marcel Dekker. pp. 293-328.
31. Sarkar JM, Leonowicz A, Bollag J-M, (1989) Immobilization of enzymes on clays and soils. Soil Biology & Biochemistry 21: 223-230.
32. Gianfreda L, Rao MA, Violante A, (1992) Adsorption, activity and kinetic-properties of urease on montmorillonite, aluminum hydroxide and Al(OH)X-montmorillonite. Soil Biology & Biochemistry 24: 51-58.
33. Quiquampoix H (2000) Mechanisms of protein adsorption on surfaces and consequences for extracellular enzyme activity in soil. In: Bollag J, Stotzky G, editors. Soil Biochemistry. New York: Marcel Dekker. pp. 171-206.
34. Deng SP, Tabatabai MA, (1994) Cellulase Activity of Soils. Soil Biology & Biochemistry 26: 1347-1354.
35. Parham JA, Deng SP, (2000) Detection, quantification and characterization of beta-glucosaminidase activity in soil. Soil Biology & Biochemistry 32: 1183-1190.
36. Aktaş N, Çiçek H, Taşpi{dotless}nar Ünal A, Kibarer G, Kolankaya N, et al. (2001) Reaction kinetics for laccase-catalyzed polymerization of 1-naphthol. Bioresource Technology 80: 29-36.
37. Brown-Peterson NJ, Salin ML, (1993) Purification of a catalase-peroxidase from Halobacterium halobium: characterization of some unique properties of the halophilic enzyme. Journal of Bacteriology 175: 4197-4202.
38. Ghori MI, Iqbal MJ, Hameed A, (2011) Characterization of a novel lipase from Bacillus sp. isolated from tannery wastes. Brazilian Journal of Microbiology 42: 22-29.
39. Hewson WD, Dunford HB, (1975) Horseradish Peroxidase. XVIII. The Arrhenius Activation Energy for the Formation of Compound I. Canadian Journal of Chemistry 53: 1928-1932.
40. Kuznetsov AM, Bogdanovskaya VA, Tarasevich MR, Gavrilova EF, (1987) The mechanism of cathode reduction of oxygen in a carbon carrier-laccase system. FEBS Letters 215: 219-222.
41. Niemetz R, Gross GG, (2003) Oxidation of pentagalloylglucose to the ellagitannin, tellimagrandin II, by a phenol oxidase from Tellima grandiflora leaves. Phytochemistry 62: 301-306.
42. Toscano G, Colarieti ML, Greco G Jr, (2003) Oxidative polymerisation of phenols by a phenol oxidase from green olives. Enzyme and Microbial Technology 33: 47-54.
43. Gonçalves EM, Pinheiro J, Abreu M, Brandão TRS, Silva CLM, (2007) Modelling the kinetics of peroxidase inactivation, colour and texture changes of pumpkin (Cucurbita maxima L.) during blanching. Journal of Food Engineering 81: 693-701.
44. Dane JD, Topp GC (2004) Hydrometer Method. Methods of Soil Analysis, Part 4, Physical Methods. Madison, Wisconsin USA: Soil Science Society of America, Inc. pp. 278-283.
45. Štursová M, Baldrian P, (2011) Effects of soil properties and management on the activity of soil organic matter transforming enzymes and the quantification of soil-bound and free activity. Plant and Soil 338: 99-110.
46. German DP, Marcelo KRB, Stone MM, Allison SD, (2012) The Michaelis-Menten kinetics of soil extracellular enzymes in response to temperature: a cross-latitudinal study. Global Change Biology 18: 1468-1479.
47. Wang G, Post WM, Mayes MA, Frerichs JT, Sindhu J, (2012) Parameter estimation for models of ligninolytic and cellulolytic enzyme kinetics. Soil Biology and Biochemistry 48: 28-38.
48. McClaugherty CA, Linkins AE, (1990) Temperature Responses of Enzymes in 2 Forest Soils. Soil Biology & Biochemistry 22: 29-33.
49. Stone MM, Weiss MS, Goodale CL, Adams MB, Fernandez IJ, et al. (2012) Temperature sensitivity of soil enzyme kinetics under N-fertilization in two temperate forests. Global Change Biology 18: 1173-1184.