메뉴 건너뛰기




Volumn 587, Issue 7, 2013, Pages 840-846

Crystal structure of Ruminococcus albus cellobiose 2-epimerase: Structural insights into epimerization of unmodified sugar

Author keywords

Cellobiose 2 epimerase; Deprotonation; Structure; Unmodified sugar; X ray crystallography

Indexed keywords

CELLOBIOSE 2 EPIMERASE; EPIMERASE; GLUCOSE; HISTIDINE; ISOMERASE; MANNOSE; OLIGOSACCHARIDE; UNCLASSIFIED DRUG; URIDINE DIPHOSPHATE N ACETYLGLUCOSAMINE 2 EPIMERASE;

EID: 84875262787     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2013.02.007     Document Type: Article
Times cited : (40)

References (26)
  • 1
    • 0031955488 scopus 로고    scopus 로고
    • The fundamental importance of human galactose metabolism: Lessons from genetics and biochemistry
    • K.G. Petry, and J.K. Reichardt The fundamental importance of human galactose metabolism: lessons from genetics and biochemistry Trends Genet. 14 1998 98 102
    • (1998) Trends Genet. , vol.14 , pp. 98-102
    • Petry, K.G.1    Reichardt, J.K.2
  • 2
    • 0029556742 scopus 로고
    • Cloning of the amphibolic Calvin cycle/OPPP enzyme d-ribulose-5-phosphate 3-epimerase (EC 5.1.3.1) from spinach chloroplasts: Functional and evolutionary aspects
    • U. Nowitzki, R. Wyrich, P. Westhoff, K. Henze, C. Schnarrenberger, and W. Martin Cloning of the amphibolic Calvin cycle/OPPP enzyme d-ribulose-5- phosphate 3-epimerase (EC 5.1.3.1) from spinach chloroplasts: functional and evolutionary aspects Plant Mol. Biol. 29 1995 1279 1291
    • (1995) Plant Mol. Biol. , vol.29 , pp. 1279-1291
    • Nowitzki, U.1    Wyrich, R.2    Westhoff, P.3    Henze, K.4    Schnarrenberger, C.5    Martin, W.6
  • 3
    • 0029565173 scopus 로고
    • Chloroplast pentose-5-phosphate 3-epimerase from potato: Cloning, cDNA sequence and tissue-specific enzyme accumulation
    • M. Teige, S. Kopriva, H. Bauwe, and K.H. Suss Chloroplast pentose-5-phosphate 3-epimerase from potato: cloning, cDNA sequence and tissue-specific enzyme accumulation FEBS Lett. 377 1995 349 352
    • (1995) FEBS Lett. , vol.377 , pp. 349-352
    • Teige, M.1    Kopriva, S.2    Bauwe, H.3    Suss, K.H.4
  • 5
    • 0014066818 scopus 로고
    • Epimerization of disaccharides by enzyme preparations from Ruminococcus albus
    • T.R. Tyler, and J.M. Leatherwood Epimerization of disaccharides by enzyme preparations from Ruminococcus albus Arch. Biochem. Biopys. 119 1967 363 367
    • (1967) Arch. Biochem. Biopys. , vol.119 , pp. 363-367
    • Tyler, T.R.1    Leatherwood, J.M.2
  • 9
    • 82155163675 scopus 로고    scopus 로고
    • Biochemical characterization of a thermophiliccellobiose 2-epimerase from a themohalophilic bacterium, Rhodothermus marinus JCM9785
    • T. Ojima, W. Saburi, H. Sato, T. Yamamoto, H. Mori, and H. Matsui Biochemical characterization of a thermophiliccellobiose 2-epimerase from a themohalophilic bacterium, Rhodothermus marinus JCM9785 Biosci. Biotechnol. Biochem. 75 2011 2162 2168
    • (2011) Biosci. Biotechnol. Biochem. , vol.75 , pp. 2162-2168
    • Ojima, T.1    Saburi, W.2    Sato, H.3    Yamamoto, T.4    Mori, H.5    Matsui, H.6
  • 10
    • 84873531246 scopus 로고    scopus 로고
    • Identification and characterization of cellobiose2-epimerase from various aerobes
    • T. Ojima, W. Saburi, T. Yamamoto, H. Mori, and H. Matsui Identification and characterization of cellobiose2-epimerase from various aerobes Biosci. Biotechnol. Biochem. 23 2013 189 193
    • (2013) Biosci. Biotechnol. Biochem. , vol.23 , pp. 189-193
    • Ojima, T.1    Saburi, W.2    Yamamoto, T.3    Mori, H.4    Matsui, H.5
  • 11
    • 84871273671 scopus 로고    scopus 로고
    • Metabolic mechanism of mannan in ruminal bacterium, Ruminococcus albus, involving two mannoside phosphorylases and cellobiose 2-epimerase: Discovery of a new metabolic carbohydrate phosphorylase, β-1,4-mannooligosaccharide phosphorylase
    • R. Kawahara, W. Saburi, R. Odaka, H. Taguchi, S. Ito, H. Mori, and H. Matsui Metabolic mechanism of mannan in ruminal bacterium, Ruminococcus albus, involving two mannoside phosphorylases and cellobiose 2-epimerase: discovery of a new metabolic carbohydrate phosphorylase, β-1,4-mannooligosaccharide phosphorylase J. Biol. Chem. 287 2012 42389 42399
    • (2012) J. Biol. Chem. , vol.287 , pp. 42389-42399
    • Kawahara, R.1    Saburi, W.2    Odaka, R.3    Taguchi, H.4    Ito, S.5    Mori, H.6    Matsui, H.7
  • 15
    • 76449108687 scopus 로고    scopus 로고
    • The nondigestible disaccharide epilactose increases paracellular Ca absorption via rho-associated kinase- and myosin light chain kinase-dependent mechanism in rat small intestines
    • T. Suzuki, M. Nishimukai, M. Takechi, H. Taguchi, S. Hamada, A. Yokota, S. Ito, H. Hara, and H. Matsui The nondigestible disaccharide epilactose increases paracellular Ca absorption via rho-associated kinase- and myosin light chain kinase-dependent mechanism in rat small intestines J. Agric. Food Chem. 58 2010 1927 1932
    • (2010) J. Agric. Food Chem. , vol.58 , pp. 1927-1932
    • Suzuki, T.1    Nishimukai, M.2    Takechi, M.3    Taguchi, H.4    Hamada, S.5    Yokota, A.6    Ito, S.7    Hara, H.8    Matsui, H.9
  • 16
    • 77956014751 scopus 로고    scopus 로고
    • Practical preparation of epilactose produced with cellobiose 2-epimerase from Ruminococcus albus NE1
    • W. Saburi, T. Yamamoto, H. Taguchi, S. Hamada, and H. Matsui Practical preparation of epilactose produced with cellobiose 2-epimerase from Ruminococcus albus NE1 Biosci. Biotechnol. Biochem. 74 2010 1736 1737
    • (2010) Biosci. Biotechnol. Biochem. , vol.74 , pp. 1736-1737
    • Saburi, W.1    Yamamoto, T.2    Taguchi, H.3    Hamada, S.4    Matsui, H.5
  • 17
    • 84865445640 scopus 로고    scopus 로고
    • Immobilization of a thermostable cellobiose 2-epimerase from Rhodothermus marinus JCM9785 and continuous production of epilactose
    • H. Sato, W. Saburi, T. Ojima, H. Taguchi, H. Mori, and H. Matsui Immobilization of a thermostable cellobiose 2-epimerase from Rhodothermus marinus JCM9785 and continuous production of epilactose Biosci. Biotechnol.Biochem. 76 2012 1584 1587
    • (2012) Biosci. Biotechnol.Biochem. , vol.76 , pp. 1584-1587
    • Sato, H.1    Saburi, W.2    Ojima, T.3    Taguchi, H.4    Mori, H.5    Matsui, H.6
  • 18
    • 33847282818 scopus 로고    scopus 로고
    • The central cavity from the (alpha/alpha)6 barrel structure of Anabaena sp. CH1 N-acetyl-d-glucosamine 2-epimerase contains two key histidine residues for reversible conversion
    • Y.C. Lee, H.M. Wu, Y.N. Chang, W.C. Wang, and W.H. Hsu The central cavity from the (alpha/alpha)6 barrel structure of Anabaena sp. CH1 N-acetyl-d-glucosamine 2-epimerase contains two key histidine residues for reversible conversion J. Mol. Biol. 367 2007 895 908
    • (2007) J. Mol. Biol. , vol.367 , pp. 895-908
    • Lee, Y.C.1    Wu, H.M.2    Chang, Y.N.3    Wang, W.C.4    Hsu, W.H.5
  • 19
    • 0034634335 scopus 로고    scopus 로고
    • Crystal structure of N-acetyl-d-glucosamine 2-epimerase from porcine kidney at 2.0 Å resolution
    • T. Itoh, B. Mikami, I. Maru, Y. Ohta, W. Hashimoto, and K. Murata Crystal structure of N-acetyl-d-glucosamine 2-epimerase from porcine kidney at 2.0 Å resolution J. Mol. Biol. 303 2000 733 744
    • (2000) J. Mol. Biol. , vol.303 , pp. 733-744
    • Itoh, T.1    Mikami, B.2    Maru, I.3    Ohta, Y.4    Hashimoto, W.5    Murata, K.6
  • 20
    • 40949157037 scopus 로고    scopus 로고
    • Crystal structure of YihS in complex with d-mannose: Structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerases
    • T. Itoh, B. Mikami, W. Hashimoto, and K. Murata Crystal structure of YihS in complex with d-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerases J. Mol. Biol. 377 2008 1443 1459
    • (2008) J. Mol. Biol. , vol.377 , pp. 1443-1459
    • Itoh, T.1    Mikami, B.2    Hashimoto, W.3    Murata, K.4
  • 21
    • 67649170998 scopus 로고    scopus 로고
    • Site-directed mutagenesis of possible catalytic residues cellobiose 2-epimerase from Ruminococcus albus
    • S. Ito, S. Hamada, H. Ito, H. Matsui, T. Ozawa, H. Taguchi, and S. Ito Site-directed mutagenesis of possible catalytic residues cellobiose 2-epimerase from Ruminococcus albus Biotechnol. Lett. 31 2009 1065 1071
    • (2009) Biotechnol. Lett. , vol.31 , pp. 1065-1071
    • Ito, S.1    Hamada, S.2    Ito, H.3    Matsui, H.4    Ozawa, T.5    Taguchi, H.6    Ito, S.7
  • 22
    • 0028871926 scopus 로고
    • DALI: A network tool for protein structure comparison
    • L. Holm, and C. Sander DALI: a network tool for protein structure comparison Trends Biochem. Sci. 20 1995 478 480
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 24
    • 0030584665 scopus 로고    scopus 로고
    • The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum
    • M.A. Pedro, S. Helene, and D. Roberto The crystal structure of endoglucanase CelA, a family 8 glycosyl hydrolase from Clostridium thermocellum Structure 4 1996 265 275
    • (1996) Structure , vol.4 , pp. 265-275
    • Pedro, M.A.1    Helene, S.2    Roberto, D.3
  • 25
    • 33748474032 scopus 로고    scopus 로고
    • Structural characterization of the Acetobacter xylinum endo-β-1,4-glucanase CMCAx required for cellulose biosynthesis
    • Y. Yasutake, S. Kawano, K. Tajima, M. Yao, Y. Satoh, M. Munekata, and I. Tanaka Structural characterization of the Acetobacter xylinum endo-β-1,4-glucanase CMCAx required for cellulose biosynthesis Proteins 64 2006 1069 1077
    • (2006) Proteins , vol.64 , pp. 1069-1077
    • Yasutake, Y.1    Kawano, S.2    Tajima, K.3    Yao, M.4    Satoh, Y.5    Munekata, M.6    Tanaka, I.7
  • 26
    • 0036005636 scopus 로고    scopus 로고
    • Understanding nature's strategies for enzyme-catalyzed racemization and epimerization
    • E.T. Martin Understanding nature's strategies for enzyme-catalyzed racemization and epimerization Acc. Chem. Res. 35 2002 237 246
    • (2002) Acc. Chem. Res. , vol.35 , pp. 237-246
    • Martin, E.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.